Wall clock time and date at job start Tue Mar 31 2020 13:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46664 * 2 1 4 4 C 1.50703 * 109.47078 * 119.99607 * 2 1 3 5 5 C 1.38242 * 120.00030 * 299.72737 * 4 2 1 6 6 C 1.38235 * 119.99708 * 179.73844 * 5 4 2 7 7 C 1.38232 * 119.99819 * 0.56218 * 6 5 4 8 8 S 1.76200 * 119.99854 * 179.71914 * 7 6 5 9 9 O 1.42098 * 106.40318 * 23.51446 * 8 7 6 10 10 O 1.42098 * 106.40147 * 156.43212 * 8 7 6 11 11 N 1.65602 * 107.21869 * 269.97655 * 8 7 6 12 12 C 1.46497 * 120.00332 * 64.59141 * 11 8 7 13 13 C 1.52993 * 109.47585 * 159.82494 * 12 11 8 14 14 C 1.50708 * 115.54759 * 65.63786 * 13 12 11 15 15 H 1.08001 * 119.99707 * 264.63639 * 14 13 12 16 16 C 1.37871 * 119.99588 * 84.63855 * 14 13 12 17 17 N 1.31522 * 119.99564 * 184.32588 * 16 14 13 18 18 Si 1.86799 * 120.00497 * 4.32744 * 16 14 13 19 19 H 1.48499 * 109.47118 * 94.15345 * 18 16 14 20 20 H 1.48500 * 109.47421 * 214.15648 * 18 16 14 21 21 H 1.48498 * 109.46639 * 334.15490 * 18 16 14 22 22 C 1.52996 * 117.49847 * 279.97284 * 13 12 11 23 23 C 1.52995 * 117.50307 * 211.30838 * 13 12 11 24 24 C 1.38236 * 120.00352 * 359.69283 * 7 6 5 25 25 C 1.38232 * 119.99943 * 0.02607 * 24 7 6 26 26 H 1.08997 * 109.46686 * 60.00494 * 1 2 3 27 27 H 1.08996 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47186 * 300.00106 * 1 2 3 29 29 H 1.08994 * 109.47186 * 239.99894 * 2 1 3 30 30 H 1.08999 * 109.46454 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47165 * 299.99213 * 3 2 1 32 32 H 1.08994 * 109.47405 * 60.00028 * 3 2 1 33 33 H 1.08004 * 119.99832 * 359.97438 * 5 4 2 34 34 H 1.08000 * 119.99573 * 180.27445 * 6 5 4 35 35 H 0.97002 * 119.99583 * 244.59270 * 11 8 7 36 36 H 1.09003 * 109.46820 * 279.83092 * 12 11 8 37 37 H 1.08997 * 109.46888 * 39.82335 * 12 11 8 38 38 H 0.97003 * 119.99348 * 180.02562 * 17 16 14 39 39 H 1.08997 * 117.49998 * 359.97438 * 22 13 12 40 40 H 1.09007 * 117.49825 * 145.01919 * 22 13 12 41 41 H 1.08991 * 117.50432 * 214.97568 * 23 13 12 42 42 H 1.09002 * 117.49715 * 359.97438 * 23 13 12 43 43 H 1.07995 * 120.00219 * 179.97438 * 24 7 6 44 44 H 1.07998 * 120.00262 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.7031 -0.2347 2.4861 6 6 2.1594 -0.8894 3.6148 7 6 2.9546 -2.0130 3.4879 8 16 3.5424 -2.8433 4.9266 9 8 2.6427 -2.5134 5.9760 10 8 3.8206 -4.1800 4.5330 11 7 4.9973 -2.1609 5.3264 12 6 5.0590 -0.7569 5.7402 13 6 6.3551 -0.5098 6.5146 14 6 7.6261 -0.6565 5.7181 15 1 8.1656 -1.5921 5.7296 16 6 8.1000 0.4036 4.9749 17 7 9.1612 0.2503 4.2132 18 14 7.2352 2.0577 5.0499 19 1 7.8928 2.9143 6.0692 20 1 7.3144 2.7183 3.7223 21 1 5.8108 1.8551 5.4178 22 6 6.3905 -0.9303 7.9852 23 6 6.3293 0.5536 7.6143 24 6 3.2883 -2.4856 2.2325 25 6 2.8272 -1.8342 1.1037 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.0861 0.6463 2.5851 34 1 1.8984 -0.5204 4.5956 35 1 5.8088 -2.6908 5.2865 36 1 5.0349 -0.1168 4.8583 37 1 4.2053 -0.5285 6.3783 38 1 9.4948 0.9963 3.6906 39 1 5.4902 -1.3826 8.4012 40 1 7.3332 -1.3126 8.3768 41 1 7.2316 1.1468 7.7621 42 1 5.3890 1.0775 7.7858 43 1 3.9098 -3.3631 2.1334 44 1 3.0881 -2.2032 0.1229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332225652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:30 Heat of formation + Delta-G solvation = -38.014043 kcal Electronic energy + Delta-G solvation = -25654.663240 eV Core-core repulsion = 22085.247353 eV Total energy + Delta-G solvation = -3569.415886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.68647 -37.47278 -36.88201 -35.69893 -35.52684 -33.45234 -32.15287 -31.12846 -30.12893 -27.41915 -26.35927 -24.92772 -23.94727 -22.87935 -21.68538 -20.42858 -19.41386 -19.04814 -17.82942 -17.03520 -16.49881 -16.18142 -15.63328 -15.16019 -15.01285 -14.66268 -14.34523 -14.04578 -13.87376 -13.60827 -13.47997 -13.28759 -12.94250 -12.77568 -12.64162 -12.58057 -12.36597 -11.84288 -11.78340 -11.69912 -11.60734 -11.45757 -11.37296 -11.15079 -10.93344 -10.90850 -10.57054 -10.51298 -10.17300 -9.59425 -9.32174 -9.15971 -9.05656 -8.90126 -8.57259 -8.52710 -6.18284 -4.22135 0.62794 0.89741 1.28578 3.21726 3.25087 3.33355 3.36790 3.55462 4.05135 4.35018 4.35622 4.44823 4.60639 4.85318 4.86990 4.89648 4.97196 5.10983 5.13990 5.24286 5.34648 5.38746 5.54388 5.56190 5.58261 5.67160 5.70301 5.87953 5.91435 5.96218 5.98289 6.00864 6.05544 6.10596 6.14214 6.19672 6.40175 6.45769 6.64358 6.70504 6.80512 7.07459 7.08590 7.62224 7.66212 8.41347 8.84239 9.44923 10.93011 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.004945 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.337336 B = 5661.426275 C = 7035.960065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C -0.147 4.147 4 C -0.027 4.027 5 C -0.139 4.139 6 C -0.018 4.018 7 C -0.676 4.676 8 S 2.692 3.308 9 O -0.966 6.966 10 O -0.968 6.968 11 N -1.093 6.093 12 C 0.154 3.846 13 C -0.007 4.007 14 C -0.489 4.489 15 H 0.080 0.920 16 C 0.080 3.920 17 N -0.894 5.894 18 Si 0.875 3.125 19 H -0.279 1.279 20 H -0.294 1.294 21 H -0.255 1.255 22 C -0.177 4.177 23 C -0.196 4.196 24 C -0.012 4.012 25 C -0.141 4.141 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.426 0.574 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.265 0.735 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.708 0.441 -6.888 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.204 4.204 4 C -0.027 4.027 5 C -0.158 4.158 6 C -0.037 4.037 7 C -0.762 4.762 8 S 2.781 3.219 9 O -0.956 6.956 10 O -0.959 6.959 11 N -0.855 5.855 12 C 0.028 3.972 13 C -0.010 4.010 14 C -0.526 4.526 15 H 0.097 0.903 16 C -0.123 4.123 17 N -0.531 5.531 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.179 1.179 22 C -0.214 4.214 23 C -0.234 4.234 24 C -0.031 4.031 25 C -0.160 4.160 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.263 0.737 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.159 0.841 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.172 -0.029 -6.593 17.464 hybrid contribution 0.154 1.382 -0.687 1.551 sum -16.018 1.353 -7.281 17.647 Atomic orbital electron populations 1.21861 0.93947 1.02173 1.02180 1.20266 0.96238 0.96454 0.95248 1.21878 1.01755 0.94608 1.02157 1.20185 0.93775 0.93829 0.94904 1.21063 1.02055 1.00784 0.91894 1.20927 0.91666 0.91416 0.99715 1.31078 1.14391 1.12336 1.18410 1.01800 0.73178 0.73067 0.73832 1.93554 1.64073 1.84827 1.53142 1.93558 1.84692 1.33762 1.83846 1.55110 1.25384 1.22279 1.82767 1.21059 0.98287 0.79654 0.98241 1.19500 0.94504 0.99474 0.87489 1.20225 1.04776 1.00580 1.27003 0.90252 1.24973 0.94456 0.98788 0.94109 1.69905 1.23683 1.32023 1.27458 0.86902 0.81601 0.84316 0.76871 1.20490 1.22139 1.17885 1.22853 1.01296 0.96773 1.00491 1.23005 1.01152 0.92113 1.07118 1.20923 0.94074 0.97253 0.90827 1.21169 0.99524 0.96362 0.98912 0.92131 0.92421 0.92244 0.90038 0.92110 0.92121 0.92207 0.85333 0.84345 0.73699 0.92364 0.92449 0.92542 0.90579 0.89432 0.89326 0.90723 0.84148 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.01 37.16 0.33 -0.76 16 2 C -0.06 -0.57 3.09 -91.76 -0.28 -0.85 16 3 C -0.15 -1.28 9.00 37.16 0.33 -0.94 16 4 C -0.03 -0.31 4.78 -104.62 -0.50 -0.81 16 5 C -0.14 -1.69 8.71 -39.58 -0.34 -2.04 16 6 C -0.02 -0.25 9.52 -39.58 -0.38 -0.63 16 7 C -0.68 -10.27 5.94 -39.58 -0.24 -10.51 16 8 S 2.69 45.01 5.74 -107.50 -0.62 44.40 16 9 O -0.97 -17.74 16.70 -57.17 -0.96 -18.70 16 10 O -0.97 -17.78 17.28 -57.17 -0.99 -18.77 16 11 N -1.09 -19.56 5.94 -10.62 -0.06 -19.63 16 12 C 0.15 2.98 5.67 -4.05 -0.02 2.96 16 13 C -0.01 -0.15 0.89 -155.66 -0.14 -0.29 16 14 C -0.49 -12.61 9.05 -34.44 -0.31 -12.92 16 15 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 16 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 18 Si 0.88 20.48 24.94 -169.99 -4.24 16.24 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.25 -5.50 5.69 56.52 0.32 -5.17 16 22 C -0.18 -3.44 9.96 -26.69 -0.27 -3.71 16 23 C -0.20 -3.93 7.35 -26.69 -0.20 -4.12 16 24 C -0.01 -0.16 9.52 -39.58 -0.38 -0.54 16 25 C -0.14 -1.73 9.67 -39.58 -0.38 -2.11 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.44 7.41 -51.93 -0.38 0.06 16 29 H 0.08 0.66 7.88 -51.93 -0.41 0.25 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.51 7.37 -51.93 -0.38 0.13 16 33 H 0.13 1.25 7.10 -52.48 -0.37 0.88 16 34 H 0.14 1.78 7.62 -52.49 -0.40 1.38 16 35 H 0.43 7.66 8.39 -34.47 -0.29 7.37 16 36 H 0.06 1.15 7.01 -51.93 -0.36 0.78 16 37 H 0.06 1.02 7.61 -51.93 -0.40 0.62 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 41 H 0.09 1.85 7.17 -51.93 -0.37 1.48 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.14 1.83 7.62 -52.49 -0.40 1.43 16 44 H 0.13 1.26 7.95 -52.49 -0.42 0.84 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -31.68 368.60 -10.18 -41.86 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.78 Total: 9.39 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: -2.86 Total: -35.22 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.71 Total: -44.76 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.94 Total: -37.47 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.24 Total: 16.24 kcal Atomic # 16 Polarization: 45.01 SS G_CDS: -0.62 Total: 44.40 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.68 -10.18 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332225652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.845 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds