Wall clock time and date at job start Tue Mar 31 2020 13:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46664 * 2 1 4 4 C 1.50703 * 109.47078 * 119.99607 * 2 1 3 5 5 C 1.38242 * 120.00030 * 299.72737 * 4 2 1 6 6 C 1.38235 * 119.99708 * 179.73844 * 5 4 2 7 7 C 1.38232 * 119.99819 * 0.56218 * 6 5 4 8 8 S 1.76200 * 119.99854 * 179.71914 * 7 6 5 9 9 O 1.42098 * 106.40318 * 23.51446 * 8 7 6 10 10 O 1.42098 * 106.40147 * 156.43212 * 8 7 6 11 11 N 1.65602 * 107.21869 * 269.97655 * 8 7 6 12 12 C 1.46497 * 120.00332 * 64.59141 * 11 8 7 13 13 C 1.52993 * 109.47585 * 159.82494 * 12 11 8 14 14 C 1.50708 * 115.54759 * 65.63786 * 13 12 11 15 15 H 1.08001 * 119.99707 * 264.63639 * 14 13 12 16 16 C 1.37871 * 119.99588 * 84.63855 * 14 13 12 17 17 N 1.31522 * 119.99564 * 184.32588 * 16 14 13 18 18 Si 1.86799 * 120.00497 * 4.32744 * 16 14 13 19 19 H 1.48499 * 109.47118 * 94.15345 * 18 16 14 20 20 H 1.48500 * 109.47421 * 214.15648 * 18 16 14 21 21 H 1.48498 * 109.46639 * 334.15490 * 18 16 14 22 22 C 1.52996 * 117.49847 * 279.97284 * 13 12 11 23 23 C 1.52995 * 117.50307 * 211.30838 * 13 12 11 24 24 C 1.38236 * 120.00352 * 359.69283 * 7 6 5 25 25 C 1.38232 * 119.99943 * 0.02607 * 24 7 6 26 26 H 1.08997 * 109.46686 * 60.00494 * 1 2 3 27 27 H 1.08996 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47186 * 300.00106 * 1 2 3 29 29 H 1.08994 * 109.47186 * 239.99894 * 2 1 3 30 30 H 1.08999 * 109.46454 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47165 * 299.99213 * 3 2 1 32 32 H 1.08994 * 109.47405 * 60.00028 * 3 2 1 33 33 H 1.08004 * 119.99832 * 359.97438 * 5 4 2 34 34 H 1.08000 * 119.99573 * 180.27445 * 6 5 4 35 35 H 0.97002 * 119.99583 * 244.59270 * 11 8 7 36 36 H 1.09003 * 109.46820 * 279.83092 * 12 11 8 37 37 H 1.08997 * 109.46888 * 39.82335 * 12 11 8 38 38 H 0.97003 * 119.99348 * 180.02562 * 17 16 14 39 39 H 1.08997 * 117.49998 * 359.97438 * 22 13 12 40 40 H 1.09007 * 117.49825 * 145.01919 * 22 13 12 41 41 H 1.08991 * 117.50432 * 214.97568 * 23 13 12 42 42 H 1.09002 * 117.49715 * 359.97438 * 23 13 12 43 43 H 1.07995 * 120.00219 * 179.97438 * 24 7 6 44 44 H 1.07998 * 120.00262 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.7031 -0.2347 2.4861 6 6 2.1594 -0.8894 3.6148 7 6 2.9546 -2.0130 3.4879 8 16 3.5424 -2.8433 4.9266 9 8 2.6427 -2.5134 5.9760 10 8 3.8206 -4.1800 4.5330 11 7 4.9973 -2.1609 5.3264 12 6 5.0590 -0.7569 5.7402 13 6 6.3551 -0.5098 6.5146 14 6 7.6261 -0.6565 5.7181 15 1 8.1656 -1.5921 5.7296 16 6 8.1000 0.4036 4.9749 17 7 9.1612 0.2503 4.2132 18 14 7.2352 2.0577 5.0499 19 1 7.8928 2.9143 6.0692 20 1 7.3144 2.7183 3.7223 21 1 5.8108 1.8551 5.4178 22 6 6.3905 -0.9303 7.9852 23 6 6.3293 0.5536 7.6143 24 6 3.2883 -2.4856 2.2325 25 6 2.8272 -1.8342 1.1037 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.0861 0.6463 2.5851 34 1 1.8984 -0.5204 4.5956 35 1 5.8088 -2.6908 5.2865 36 1 5.0349 -0.1168 4.8583 37 1 4.2053 -0.5285 6.3783 38 1 9.4948 0.9963 3.6906 39 1 5.4902 -1.3826 8.4012 40 1 7.3332 -1.3126 8.3768 41 1 7.2316 1.1468 7.7621 42 1 5.3890 1.0775 7.7858 43 1 3.9098 -3.3631 2.1334 44 1 3.0881 -2.2032 0.1229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332225652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:29 Heat of formation + Delta-G solvation = -58.585512 kcal Electronic energy + Delta-G solvation = -25655.555285 eV Core-core repulsion = 22085.247353 eV Total energy + Delta-G solvation = -3570.307932 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.61652 -39.09207 -38.29767 -36.98233 -36.43783 -34.95025 -34.17116 -32.10935 -31.05015 -28.15950 -28.01506 -26.65505 -24.86550 -23.86321 -23.27363 -21.29538 -21.05106 -20.37626 -19.04105 -18.60020 -18.13273 -17.26160 -16.93697 -16.73542 -16.23181 -15.76038 -15.63099 -15.21900 -14.89102 -14.74132 -14.64714 -14.42948 -14.38296 -14.26185 -14.06652 -13.56566 -13.30610 -13.22549 -13.16479 -13.01015 -12.96648 -12.74890 -12.50076 -12.30836 -12.11802 -12.10509 -11.89455 -11.63908 -11.59480 -11.40403 -11.02142 -10.73845 -10.33561 -10.17609 -10.11960 -10.04511 -8.25436 -6.32615 -0.61870 -0.20662 0.29525 1.38383 1.42290 1.53765 1.99972 2.40748 2.44882 2.77394 3.09234 3.21811 3.35392 3.58609 3.70934 3.91169 4.00438 4.09182 4.24942 4.31258 4.38656 4.40218 4.44116 4.46880 4.48368 4.60886 4.74906 4.79083 4.85539 4.91344 4.94829 4.96606 5.04670 5.06181 5.09768 5.15362 5.22709 5.28385 5.36030 5.48433 5.52179 5.54286 5.73336 5.84849 6.13194 6.34554 6.76187 7.37675 8.89370 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.004945 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.337336 B = 5661.426275 C = 7035.960065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.062 4.062 3 C -0.147 4.147 4 C -0.024 4.024 5 C -0.141 4.141 6 C -0.032 4.032 7 C -0.690 4.690 8 S 2.709 3.291 9 O -0.982 6.982 10 O -0.991 6.991 11 N -1.099 6.099 12 C 0.156 3.844 13 C -0.033 4.033 14 C -0.481 4.481 15 H 0.037 0.963 16 C 0.024 3.976 17 N -0.947 5.947 18 Si 0.928 3.072 19 H -0.275 1.275 20 H -0.301 1.301 21 H -0.221 1.221 22 C -0.166 4.166 23 C -0.188 4.188 24 C -0.031 4.031 25 C -0.147 4.147 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.422 0.578 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.264 0.736 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.141 0.859 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.622 2.229 -7.213 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.204 4.204 4 C -0.024 4.024 5 C -0.159 4.159 6 C -0.052 4.052 7 C -0.779 4.779 8 S 2.802 3.198 9 O -0.972 6.972 10 O -0.981 6.981 11 N -0.860 5.860 12 C 0.030 3.970 13 C -0.035 4.035 14 C -0.518 4.518 15 H 0.056 0.944 16 C -0.173 4.173 17 N -0.586 5.586 18 Si 0.753 3.247 19 H -0.201 1.201 20 H -0.229 1.229 21 H -0.143 1.143 22 C -0.203 4.203 23 C -0.226 4.226 24 C -0.051 4.051 25 C -0.165 4.165 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.173 0.827 34 H 0.165 0.835 35 H 0.258 0.742 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.124 0.876 43 H 0.159 0.841 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.096 1.732 -6.861 20.365 hybrid contribution 1.072 0.745 -0.645 1.456 sum -18.025 2.477 -7.507 19.682 Atomic orbital electron populations 1.21857 0.92672 1.02305 1.03129 1.20343 0.97183 0.96322 0.94192 1.21891 1.00790 0.94568 1.03175 1.20604 0.92554 0.93286 0.96006 1.21401 1.01768 1.01270 0.91470 1.21171 0.91769 0.91254 1.00972 1.30720 1.16107 1.13518 1.17560 1.01067 0.72395 0.72513 0.73857 1.93518 1.64207 1.84998 1.54521 1.93521 1.84946 1.35376 1.84264 1.55127 1.25595 1.21841 1.83390 1.20984 0.97684 0.80184 0.98156 1.19434 0.93565 1.02255 0.88242 1.20361 1.05990 0.98687 1.26811 0.94441 1.25768 0.95108 1.02577 0.93887 1.70057 1.26053 1.33118 1.29390 0.86044 0.82480 0.79660 0.76533 1.20093 1.22889 1.14270 1.22883 1.02071 0.96820 0.98498 1.23088 1.02251 0.92217 1.05094 1.21119 0.94801 0.97870 0.91298 1.21506 0.99199 0.96460 0.99357 0.90528 0.92714 0.92021 0.89041 0.93617 0.90375 0.92017 0.82737 0.83462 0.74207 0.92788 0.90024 0.92759 0.88198 0.90222 0.90407 0.87576 0.84136 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.01 71.98 0.65 -1.03 16 2 C -0.06 -0.91 3.09 -11.53 -0.04 -0.95 16 3 C -0.15 -2.12 9.00 71.98 0.65 -1.47 16 4 C -0.02 -0.50 4.78 -19.86 -0.09 -0.60 16 5 C -0.14 -3.04 8.71 22.27 0.19 -2.85 16 6 C -0.03 -0.84 9.52 22.27 0.21 -0.63 16 7 C -0.69 -20.42 5.94 22.27 0.13 -20.29 16 8 S 2.71 89.72 5.74 -56.49 -0.32 89.39 16 9 O -0.98 -34.99 16.70 -128.00 -2.14 -37.13 16 10 O -0.99 -36.85 17.28 -128.00 -2.21 -39.07 16 11 N -1.10 -39.08 5.94 -187.51 -1.11 -40.19 16 12 C 0.16 5.78 5.67 86.38 0.49 6.27 16 13 C -0.03 -1.37 0.89 -52.93 -0.05 -1.42 16 14 C -0.48 -25.35 9.05 25.60 0.23 -25.12 16 15 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 16 C 0.02 1.33 5.47 84.65 0.46 1.80 16 17 N -0.95 -56.82 13.96 21.45 0.30 -56.52 16 18 Si 0.93 41.50 24.94 68.60 1.71 43.21 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.22 -8.55 5.69 99.48 0.57 -7.99 16 22 C -0.17 -6.13 9.96 30.62 0.30 -5.82 16 23 C -0.19 -7.02 7.35 30.62 0.23 -6.79 16 24 C -0.03 -0.87 9.52 22.27 0.21 -0.66 16 25 C -0.15 -3.36 9.67 22.27 0.22 -3.14 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.71 7.41 -2.39 -0.02 0.69 16 29 H 0.09 1.18 7.88 -2.39 -0.02 1.16 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.86 7.37 -2.39 -0.02 0.84 16 33 H 0.16 2.46 7.10 -2.91 -0.02 2.44 16 34 H 0.15 3.47 7.62 -2.91 -0.02 3.44 16 35 H 0.42 15.61 8.39 -96.74 -0.81 14.80 16 36 H 0.05 2.02 7.01 -2.39 -0.02 2.01 16 37 H 0.08 2.63 7.61 -2.39 -0.02 2.61 16 38 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 39 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 41 H 0.08 3.08 7.17 -2.39 -0.02 3.06 16 42 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.14 3.73 7.62 -2.91 -0.02 3.71 16 44 H 0.15 2.65 7.95 -2.91 -0.02 2.63 16 Total: -1.00 -69.19 368.60 0.07 -69.13 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.04 Total: 33.87 kcal Atomic # 6 Polarization: -66.49 SS G_CDS: 3.80 Total: -62.69 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -0.81 Total: -96.71 kcal Atomic # 8 Polarization: -71.84 SS G_CDS: -4.35 Total: -76.19 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.71 Total: 43.21 kcal Atomic # 16 Polarization: 89.72 SS G_CDS: -0.32 Total: 89.39 kcal Total: -69.19 0.07 -69.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332225652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.542 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds