Wall clock time and date at job start Tue Mar 31 2020 14:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47083 * 2 1 4 4 C 1.53002 * 109.46814 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47175 * 180.02562 * 4 3 2 6 6 C 1.46495 * 119.99884 * 270.00274 * 5 4 3 7 7 C 1.53005 * 109.47090 * 283.25509 * 6 5 4 8 8 O 1.42893 * 109.47150 * 68.24629 * 7 6 5 9 9 C 1.34773 * 120.00051 * 89.99557 * 5 4 3 10 10 O 1.21550 * 120.00339 * 357.45157 * 9 5 4 11 11 C 1.47866 * 119.99745 * 177.44403 * 9 5 4 12 12 C 1.39665 * 120.10256 * 321.13036 * 11 9 5 13 13 C 1.38047 * 120.03984 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23829 * 359.68084 * 13 12 11 15 15 C 1.39176 * 120.20534 * 0.59649 * 14 13 12 16 16 S 1.76202 * 120.02297 * 179.69576 * 15 14 13 17 17 C 1.76198 * 100.00374 * 264.78433 * 16 15 14 18 18 H 1.08001 * 119.99475 * 5.01218 * 17 16 15 19 19 C 1.38720 * 120.00175 * 185.01397 * 17 16 15 20 20 N 1.31632 * 120.00010 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00081 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47173 * 59.99998 * 21 19 17 23 23 H 1.48506 * 109.46897 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47115 * 299.99550 * 21 19 17 25 25 C 1.38879 * 119.96029 * 359.42912 * 15 14 13 26 26 H 1.09000 * 109.46595 * 59.99911 * 1 2 3 27 27 H 1.08995 * 109.47260 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47202 * 300.00521 * 1 2 3 29 29 H 1.08999 * 109.46522 * 239.99781 * 2 1 3 30 30 H 1.09000 * 109.46595 * 120.00089 * 2 1 3 31 31 H 1.09007 * 109.47148 * 60.00054 * 3 2 1 32 32 H 1.09000 * 109.47478 * 299.99548 * 3 2 1 33 33 H 1.08999 * 109.47381 * 60.00158 * 4 3 2 34 34 H 1.08994 * 109.47268 * 299.99907 * 4 3 2 35 35 H 1.09003 * 109.47437 * 43.25363 * 6 5 4 36 36 H 1.09004 * 109.47230 * 163.25293 * 6 5 4 37 37 H 1.09005 * 109.47112 * 188.25099 * 7 6 5 38 38 H 1.09004 * 109.46506 * 308.24274 * 7 6 5 39 39 H 0.96702 * 113.99525 * 180.02562 * 8 7 6 40 40 H 1.08005 * 119.98236 * 0.02562 * 12 11 9 41 41 H 1.08001 * 119.87890 * 179.97438 * 13 12 11 42 42 H 1.08005 * 119.89770 * 180.29988 * 14 13 12 43 43 H 0.96999 * 120.00087 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.12402 * 180.25130 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.3032 3.5145 -1.2671 7 6 5.6167 3.0170 -1.8739 8 8 5.4668 1.6563 -2.2837 9 6 4.2826 3.4586 1.1687 10 8 4.0356 2.9019 2.2206 11 6 4.8290 4.8326 1.1699 12 6 5.8124 5.1962 0.2472 13 6 6.3220 6.4791 0.2498 14 6 5.8581 7.4103 1.1592 15 6 4.8826 7.0572 2.0869 16 16 4.3002 8.2462 3.2496 17 6 5.3333 7.8616 4.6242 18 1 6.1146 7.1229 4.5224 19 6 5.1431 8.5076 5.8370 20 7 4.1912 9.4082 5.9608 21 14 6.2389 8.1003 7.2941 22 1 7.6525 8.3956 6.9482 23 1 5.8338 8.9219 8.4629 24 1 6.1016 6.6602 7.6293 25 6 4.3643 5.7688 2.0921 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.9284 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 3.4840 3.3097 -1.9564 36 1 4.3686 4.5880 -1.0894 37 1 5.8734 3.6305 -2.7375 38 1 6.4101 3.0871 -1.1297 39 1 6.2629 1.2744 -2.6781 40 1 6.1743 4.4732 -0.4689 41 1 7.0826 6.7574 -0.4647 42 1 6.2572 8.4139 1.1532 43 1 4.0585 9.8602 6.8088 44 1 3.6043 5.4931 2.8082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339746771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:08 Heat of formation + Delta-G solvation = -64.808646 kcal Electronic energy + Delta-G solvation = -24841.478153 eV Core-core repulsion = 21270.900365 eV Total energy + Delta-G solvation = -3570.577787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44122 -38.01096 -37.44064 -35.94805 -34.55669 -32.50221 -31.36640 -30.71889 -29.73029 -28.39533 -25.56462 -24.51935 -23.42555 -22.59809 -22.13057 -21.22241 -19.41464 -18.16500 -17.82463 -17.26070 -16.45723 -15.84023 -15.67433 -15.37302 -15.14687 -14.84180 -14.44461 -14.24215 -13.97679 -13.64077 -13.61020 -13.26765 -13.00562 -12.97545 -12.72439 -12.44479 -12.20534 -11.83667 -11.59128 -11.45132 -11.26679 -11.21029 -11.17240 -11.12284 -11.06201 -10.73480 -10.62691 -10.29428 -9.93028 -9.72278 -9.14308 -8.98708 -8.75153 -8.55589 -8.02728 -6.72053 -6.28204 -4.02500 1.24462 1.63477 2.84877 3.00339 3.21190 3.24895 3.27495 3.46423 3.86704 4.01016 4.23453 4.46990 4.69339 4.78711 4.83177 4.84871 4.97345 5.05003 5.08280 5.12444 5.21279 5.28957 5.33206 5.46991 5.49852 5.58790 5.60999 5.66904 5.68498 5.74948 5.85589 5.85899 5.97235 6.01732 6.15332 6.23192 6.24339 6.51425 6.59160 6.62739 6.91470 7.17075 7.21817 7.40642 7.58352 8.26792 8.33419 9.17836 10.78476 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.003180 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.591611 B = 8802.303013 C = 9848.326951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.135 4.135 4 C 0.116 3.884 5 N -0.605 5.605 6 C 0.098 3.902 7 C 0.052 3.948 8 O -0.568 6.568 9 C 0.561 3.439 10 O -0.529 6.529 11 C -0.148 4.148 12 C -0.112 4.112 13 C -0.139 4.139 14 C -0.060 4.060 15 C -0.102 4.102 16 S -0.035 6.035 17 C -0.520 4.520 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.871 5.871 21 Si 0.921 3.079 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.026 4.026 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.378 0.622 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.270 0.730 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 -14.165 -19.208 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.174 4.174 4 C -0.006 4.006 5 N -0.338 5.338 6 C -0.026 4.026 7 C -0.027 4.027 8 O -0.374 6.374 9 C 0.351 3.649 10 O -0.405 6.405 11 C -0.153 4.153 12 C -0.131 4.131 13 C -0.159 4.159 14 C -0.081 4.081 15 C -0.213 4.213 16 S 0.199 5.801 17 C -0.667 4.667 18 H 0.094 0.906 19 C -0.135 4.135 20 N -0.506 5.506 21 Si 0.746 3.254 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.047 4.047 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.225 0.775 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.670 -13.387 -18.324 22.703 hybrid contribution 2.230 -1.192 0.725 2.631 sum 1.560 -14.579 -17.599 22.907 Atomic orbital electron populations 1.21760 0.95832 1.01402 1.01904 1.21425 0.95917 0.96481 1.01970 1.21970 0.95882 0.97095 1.02454 1.21583 0.93525 0.81826 1.03707 1.47785 1.66222 1.14445 1.05319 1.21969 0.96705 0.98484 0.85409 1.22914 0.98207 0.83414 0.98129 1.86483 1.41085 1.26733 1.83076 1.18591 0.77244 0.85809 0.83304 1.90782 1.51513 1.67294 1.30923 1.19848 1.01629 0.93663 1.00159 1.21659 0.96639 0.96968 0.97785 1.21066 1.01035 0.93532 1.00272 1.21930 0.93610 0.99518 0.93022 1.22834 0.98728 0.98666 1.01041 1.83567 1.51596 1.38749 1.06148 1.22799 1.19052 1.28455 0.96394 0.90631 1.24995 0.95736 0.94575 0.98204 1.69978 1.30244 1.24168 1.26256 0.86178 0.80162 0.78770 0.80248 1.19815 1.20726 1.19722 1.21864 0.97126 0.91449 0.94303 0.92872 0.92871 0.92630 0.92041 0.91882 0.91526 0.92100 0.88888 0.90467 0.89972 0.87096 0.92252 0.92599 0.77509 0.85372 0.85891 0.85107 0.92003 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.14 -1.50 5.54 -26.73 -0.15 -1.65 16 4 C 0.12 1.37 5.27 -4.04 -0.02 1.35 16 5 N -0.61 -7.80 2.50 -174.79 -0.44 -8.24 16 6 C 0.10 0.95 5.35 -4.04 -0.02 0.92 16 7 C 0.05 0.39 6.34 37.16 0.24 0.62 16 8 O -0.57 -4.22 11.55 -35.23 -0.41 -4.63 16 9 C 0.56 9.51 7.34 -12.32 -0.09 9.42 16 10 O -0.53 -10.98 16.51 5.32 0.09 -10.89 16 11 C -0.15 -2.53 5.14 -105.00 -0.54 -3.07 16 12 C -0.11 -1.54 7.41 -39.12 -0.29 -1.83 16 13 C -0.14 -1.94 10.02 -39.67 -0.40 -2.34 16 14 C -0.06 -1.05 9.79 -39.26 -0.38 -1.44 16 15 C -0.10 -2.17 5.45 -39.00 -0.21 -2.38 16 16 S -0.04 -0.91 21.41 -107.50 -2.30 -3.21 16 17 C -0.52 -14.80 9.46 30.91 0.29 -14.51 16 18 H 0.08 2.15 7.79 -52.49 -0.41 1.74 16 19 C 0.07 2.09 5.49 -17.46 -0.10 1.99 16 20 N -0.87 -25.59 13.22 55.49 0.73 -24.85 16 21 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 25 C -0.03 -0.52 9.38 -38.92 -0.36 -0.89 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.98 6.06 -51.93 -0.31 0.66 16 34 H 0.08 1.04 7.46 -51.93 -0.39 0.66 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 1.10 5.00 -51.93 -0.26 0.84 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.45 6.27 -51.93 -0.33 0.13 16 39 H 0.38 1.26 9.12 45.56 0.42 1.67 16 40 H 0.13 1.34 3.40 -52.48 -0.18 1.16 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.13 2.94 8.05 -52.49 -0.42 2.51 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -33.92 374.72 -9.20 -43.12 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.67 Total: 2.34 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -1.83 Total: -16.00 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.30 Total: -33.09 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.32 Total: -15.51 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.92 -9.20 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339746771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.693 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds