Wall clock time and date at job start Tue Mar 31 2020 14:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47083 * 2 1 4 4 C 1.53002 * 109.46814 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47175 * 180.02562 * 4 3 2 6 6 C 1.46495 * 119.99884 * 270.00274 * 5 4 3 7 7 C 1.53005 * 109.47090 * 283.25509 * 6 5 4 8 8 O 1.42893 * 109.47150 * 68.24629 * 7 6 5 9 9 C 1.34773 * 120.00051 * 89.99557 * 5 4 3 10 10 O 1.21550 * 120.00339 * 357.45157 * 9 5 4 11 11 C 1.47866 * 119.99745 * 177.44403 * 9 5 4 12 12 C 1.39665 * 120.10256 * 321.13036 * 11 9 5 13 13 C 1.38047 * 120.03984 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23829 * 359.68084 * 13 12 11 15 15 C 1.39176 * 120.20534 * 0.59649 * 14 13 12 16 16 S 1.76202 * 120.02297 * 179.69576 * 15 14 13 17 17 C 1.76198 * 100.00374 * 264.78433 * 16 15 14 18 18 H 1.08001 * 119.99475 * 5.01218 * 17 16 15 19 19 C 1.38720 * 120.00175 * 185.01397 * 17 16 15 20 20 N 1.31632 * 120.00010 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00081 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47173 * 59.99998 * 21 19 17 23 23 H 1.48506 * 109.46897 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47115 * 299.99550 * 21 19 17 25 25 C 1.38879 * 119.96029 * 359.42912 * 15 14 13 26 26 H 1.09000 * 109.46595 * 59.99911 * 1 2 3 27 27 H 1.08995 * 109.47260 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47202 * 300.00521 * 1 2 3 29 29 H 1.08999 * 109.46522 * 239.99781 * 2 1 3 30 30 H 1.09000 * 109.46595 * 120.00089 * 2 1 3 31 31 H 1.09007 * 109.47148 * 60.00054 * 3 2 1 32 32 H 1.09000 * 109.47478 * 299.99548 * 3 2 1 33 33 H 1.08999 * 109.47381 * 60.00158 * 4 3 2 34 34 H 1.08994 * 109.47268 * 299.99907 * 4 3 2 35 35 H 1.09003 * 109.47437 * 43.25363 * 6 5 4 36 36 H 1.09004 * 109.47230 * 163.25293 * 6 5 4 37 37 H 1.09005 * 109.47112 * 188.25099 * 7 6 5 38 38 H 1.09004 * 109.46506 * 308.24274 * 7 6 5 39 39 H 0.96702 * 113.99525 * 180.02562 * 8 7 6 40 40 H 1.08005 * 119.98236 * 0.02562 * 12 11 9 41 41 H 1.08001 * 119.87890 * 179.97438 * 13 12 11 42 42 H 1.08005 * 119.89770 * 180.29988 * 14 13 12 43 43 H 0.96999 * 120.00087 * 180.02562 * 20 19 17 44 44 H 1.07997 * 120.12402 * 180.25130 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.3032 3.5145 -1.2671 7 6 5.6167 3.0170 -1.8739 8 8 5.4668 1.6563 -2.2837 9 6 4.2826 3.4586 1.1687 10 8 4.0356 2.9019 2.2206 11 6 4.8290 4.8326 1.1699 12 6 5.8124 5.1962 0.2472 13 6 6.3220 6.4791 0.2498 14 6 5.8581 7.4103 1.1592 15 6 4.8826 7.0572 2.0869 16 16 4.3002 8.2462 3.2496 17 6 5.3333 7.8616 4.6242 18 1 6.1146 7.1229 4.5224 19 6 5.1431 8.5076 5.8370 20 7 4.1912 9.4082 5.9608 21 14 6.2389 8.1003 7.2941 22 1 7.6525 8.3956 6.9482 23 1 5.8338 8.9219 8.4629 24 1 6.1016 6.6602 7.6293 25 6 4.3643 5.7688 2.0921 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.9284 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 3.4840 3.3097 -1.9564 36 1 4.3686 4.5880 -1.0894 37 1 5.8734 3.6305 -2.7375 38 1 6.4101 3.0871 -1.1297 39 1 6.2629 1.2744 -2.6781 40 1 6.1743 4.4732 -0.4689 41 1 7.0826 6.7574 -0.4647 42 1 6.2572 8.4139 1.1532 43 1 4.0585 9.8602 6.8088 44 1 3.6043 5.4931 2.8082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339746771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:07 Heat of formation + Delta-G solvation = -87.408720 kcal Electronic energy + Delta-G solvation = -24842.458166 eV Core-core repulsion = 21270.900365 eV Total energy + Delta-G solvation = -3571.557800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66103 -39.31778 -38.28552 -36.83461 -35.45992 -34.67082 -32.55225 -32.07247 -30.68714 -29.32195 -27.75940 -25.62595 -24.21143 -23.90993 -23.30924 -22.09551 -20.67571 -19.77980 -18.70684 -18.61071 -17.53386 -17.06701 -16.94965 -16.84665 -16.41316 -16.23240 -15.71101 -15.44039 -15.01799 -14.81305 -14.67643 -14.49765 -14.30298 -13.94501 -13.86435 -13.44221 -13.40340 -13.25458 -12.98635 -12.83411 -12.67826 -12.62794 -12.43100 -12.26505 -12.08574 -11.99621 -11.75039 -11.49846 -11.26534 -11.12756 -10.81478 -10.68888 -10.02981 -9.72845 -9.66905 -8.81852 -8.41099 -6.20965 -0.12572 0.21792 1.27254 1.37003 1.41955 1.53380 1.74363 1.89156 2.22246 2.67500 2.91823 3.30071 3.37921 3.41348 3.86925 3.91979 3.95990 3.97423 4.05209 4.19738 4.27575 4.31631 4.41458 4.44017 4.49135 4.60546 4.67697 4.69928 4.75112 4.83394 4.88645 4.91977 4.94046 5.04976 5.19468 5.22219 5.28955 5.32350 5.36485 5.40120 5.48541 5.54884 5.84360 6.13733 6.24411 6.95698 6.99394 7.00878 8.65631 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.003180 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.591611 B = 8802.303013 C = 9848.326951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.130 4.130 4 C 0.118 3.882 5 N -0.592 5.592 6 C 0.085 3.915 7 C 0.056 3.944 8 O -0.584 6.584 9 C 0.555 3.445 10 O -0.582 6.582 11 C -0.150 4.150 12 C -0.084 4.084 13 C -0.115 4.115 14 C -0.065 4.065 15 C -0.124 4.124 16 S -0.090 6.090 17 C -0.538 4.538 18 H 0.065 0.935 19 C 0.022 3.978 20 N -0.905 5.905 21 Si 0.989 3.011 22 H -0.260 1.260 23 H -0.269 1.269 24 H -0.273 1.273 25 C -0.051 4.051 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.398 0.602 40 H 0.173 0.827 41 H 0.180 0.820 42 H 0.138 0.862 43 H 0.274 0.726 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -15.656 -22.693 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.169 4.169 4 C -0.004 4.004 5 N -0.323 5.323 6 C -0.037 4.037 7 C -0.022 4.022 8 O -0.393 6.393 9 C 0.345 3.655 10 O -0.463 6.463 11 C -0.155 4.155 12 C -0.102 4.102 13 C -0.134 4.134 14 C -0.086 4.086 15 C -0.235 4.235 16 S 0.144 5.856 17 C -0.686 4.686 18 H 0.083 0.917 19 C -0.184 4.184 20 N -0.541 5.541 21 Si 0.811 3.189 22 H -0.184 1.184 23 H -0.193 1.193 24 H -0.198 1.198 25 C -0.073 4.073 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.248 0.752 40 H 0.190 0.810 41 H 0.197 0.803 42 H 0.155 0.845 43 H 0.084 0.916 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.776 -14.885 -21.884 26.526 hybrid contribution 1.460 -0.851 1.573 2.309 sum 3.236 -15.735 -20.311 25.896 Atomic orbital electron populations 1.21764 0.95326 1.02226 1.01580 1.21413 0.96354 0.95083 1.02575 1.21917 0.95409 0.98294 1.01249 1.21672 0.93871 0.81165 1.03693 1.47878 1.64378 1.14655 1.05374 1.22319 0.99221 0.98260 0.83882 1.22816 0.95925 0.84242 0.99216 1.86412 1.42779 1.26707 1.83364 1.18681 0.77232 0.85797 0.83825 1.90753 1.54046 1.68404 1.33106 1.19904 1.02420 0.93051 1.00161 1.22161 0.93854 0.97822 0.96386 1.21576 1.00514 0.92145 0.99167 1.22068 0.92659 1.00934 0.92898 1.22485 1.01627 0.97728 1.01638 1.83408 1.52924 1.41530 1.07688 1.23029 1.19359 1.28309 0.97863 0.91711 1.25971 0.97166 0.94225 1.01029 1.70093 1.31762 1.25110 1.27150 0.85141 0.78654 0.78391 0.76734 1.18444 1.19334 1.19834 1.21527 0.97806 0.92373 0.95591 0.92129 0.91479 0.94056 0.90005 0.92637 0.94967 0.90955 0.86467 0.92651 0.88462 0.87218 0.88713 0.92901 0.75183 0.80992 0.80302 0.84460 0.91637 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.76 16 2 C -0.12 -2.03 5.93 30.59 0.18 -1.85 16 3 C -0.13 -2.85 5.54 30.59 0.17 -2.68 16 4 C 0.12 2.67 5.27 86.38 0.46 3.12 16 5 N -0.59 -14.50 2.50 -825.19 -2.06 -16.56 16 6 C 0.08 1.34 5.35 86.38 0.46 1.80 16 7 C 0.06 0.54 6.34 71.98 0.46 1.00 16 8 O -0.58 -5.88 11.55 -148.98 -1.72 -7.60 16 9 C 0.56 19.14 7.34 86.79 0.64 19.77 16 10 O -0.58 -25.70 16.51 -3.87 -0.06 -25.77 16 11 C -0.15 -5.11 5.14 -20.11 -0.10 -5.22 16 12 C -0.08 -2.01 7.41 22.57 0.17 -1.84 16 13 C -0.11 -2.70 10.02 22.21 0.22 -2.48 16 14 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 15 C -0.12 -5.46 5.45 22.65 0.12 -5.34 16 16 S -0.09 -4.95 21.41 -56.49 -1.21 -6.16 16 17 C -0.54 -32.16 9.46 67.94 0.64 -31.51 16 18 H 0.06 3.86 7.79 -2.91 -0.02 3.84 16 19 C 0.02 1.25 5.49 84.84 0.47 1.72 16 20 N -0.90 -55.06 13.22 21.63 0.29 -54.77 16 21 Si 0.99 45.52 29.55 68.60 2.03 47.55 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 25 C -0.05 -2.21 9.38 22.70 0.21 -2.00 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 2.13 6.06 -2.39 -0.01 2.11 16 34 H 0.05 1.52 7.46 -2.39 -0.02 1.50 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.11 1.76 5.00 -2.38 -0.01 1.75 16 37 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 38 H 0.05 0.55 6.27 -2.39 -0.01 0.54 16 39 H 0.40 0.71 9.12 -74.06 -0.68 0.03 16 40 H 0.17 2.62 3.40 -2.91 -0.01 2.61 16 41 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.10 4.75 8.05 -2.91 -0.02 4.73 16 Total: -1.00 -81.42 374.72 2.62 -78.80 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.34 Total: 13.77 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 5.03 Total: -29.26 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.78 Total: -71.33 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.78 Total: -33.37 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -4.95 SS G_CDS: -1.21 Total: -6.16 kcal Total: -81.42 2.62 -78.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339746771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.607 kcal (2) G-P(sol) polarization free energy of solvation -81.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds