Wall clock time and date at job start Tue Mar 31 2020 14:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99893 * 2 1 4 4 C 1.53001 * 109.47355 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46808 * 60.00263 * 4 3 2 6 6 C 1.52996 * 109.47112 * 300.00144 * 4 3 2 7 7 C 1.53004 * 109.47164 * 179.97438 * 4 3 2 8 8 N 1.46492 * 109.47018 * 180.02562 * 7 4 3 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 4 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31631 * 119.99738 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00147 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46962 * 89.99772 * 21 19 17 23 23 H 1.48502 * 109.47274 * 210.00042 * 21 19 17 24 24 H 1.48499 * 109.47299 * 330.00031 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08999 * 109.47382 * 60.00246 * 1 2 3 27 27 H 1.09001 * 109.46413 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47173 * 299.99576 * 1 2 3 29 29 H 1.08998 * 109.47452 * 59.99751 * 3 2 1 30 30 H 1.09004 * 109.47329 * 299.99839 * 3 2 1 31 31 H 1.09002 * 109.46676 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.46830 * 299.99548 * 5 4 3 33 33 H 1.08994 * 109.47261 * 59.99792 * 5 4 3 34 34 H 1.08998 * 109.46733 * 299.99547 * 6 4 3 35 35 H 1.08999 * 109.47116 * 60.00151 * 6 4 3 36 36 H 1.09003 * 109.46647 * 179.97438 * 6 4 3 37 37 H 1.09005 * 109.46655 * 60.00207 * 7 4 3 38 38 H 1.09002 * 109.47164 * 300.00138 * 7 4 3 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 7 4 40 40 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 43 43 H 0.96995 * 120.00040 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4253 -1.2484 6 6 3.9864 0.4257 1.2502 7 6 4.1577 2.5825 0.0000 8 7 5.6180 2.4669 0.0000 9 6 6.3820 3.5773 0.0000 10 8 5.8592 4.6746 -0.0005 11 6 7.8561 3.4606 0.0006 12 6 8.4589 2.2008 0.0017 13 6 9.8352 2.0933 0.0027 14 6 10.6219 3.2292 -0.0040 15 6 10.0318 4.4897 0.0007 16 16 11.0396 5.9349 0.0001 17 6 11.1029 6.2645 1.7298 18 1 10.6554 5.5727 2.4282 19 6 11.7276 7.4127 2.1948 20 7 11.7752 7.6586 3.4871 21 14 12.5010 8.6095 0.9872 22 1 11.4936 9.6217 0.5795 23 1 13.6526 9.2894 1.6327 24 1 12.9715 7.8691 -0.2110 25 6 8.6480 4.6076 0.0001 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 5.0740 0.3397 -1.2481 32 1 3.5441 -0.5705 -1.2483 33 1 3.6661 0.9660 -2.1385 34 1 3.6644 0.9668 2.1399 35 1 3.5431 -0.5701 1.2501 36 1 5.0730 0.3393 1.2503 37 1 3.8357 3.1239 0.8896 38 1 3.8363 3.1229 -0.8904 39 1 6.0353 1.5913 0.0008 40 1 7.8481 1.3101 0.0017 41 1 10.2986 1.1178 0.0040 42 1 11.6981 3.1387 -0.0080 43 1 12.2116 8.4615 3.8122 44 1 8.1872 5.5843 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343550792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:00 Heat of formation + Delta-G solvation = -70.858742 kcal Electronic energy + Delta-G solvation = -24192.064817 eV Core-core repulsion = 20621.224678 eV Total energy + Delta-G solvation = -3570.840139 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.23877 -39.02253 -37.88506 -36.58544 -33.47118 -32.49514 -30.93317 -30.59747 -27.84261 -27.59421 -27.06971 -25.67772 -25.45741 -23.29916 -22.27273 -20.47104 -19.60570 -18.39069 -17.39531 -16.83875 -16.29549 -16.25844 -15.59270 -15.38544 -15.37490 -15.20213 -14.89269 -14.32612 -14.15684 -13.90484 -13.59805 -13.49278 -13.35894 -13.06431 -12.91245 -12.42512 -12.18104 -12.04164 -11.99905 -11.93467 -11.36549 -11.25100 -11.20653 -11.18862 -11.09595 -10.95680 -10.62693 -10.06864 -9.95071 -9.82573 -9.23909 -9.15418 -9.07886 -8.64402 -8.15943 -7.13268 -6.32621 -4.08103 1.10308 1.58930 2.83574 2.96145 3.05170 3.27562 3.38845 3.47740 3.54041 4.06993 4.26512 4.33038 4.35250 4.50057 4.80919 4.86854 4.90035 4.91670 4.92734 5.03571 5.06328 5.10064 5.13511 5.17997 5.25505 5.36261 5.41017 5.49339 5.62016 5.62290 5.68630 5.70686 5.78773 5.91327 5.98586 6.00105 6.18068 6.31514 6.51158 6.56722 6.72617 6.82777 7.10576 7.45559 7.91550 8.26352 8.45048 9.11178 10.76784 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.002343 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.778549 B =11946.966077 C =12383.659775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.074 3.926 4 C -0.075 4.075 5 C -0.139 4.139 6 C -0.140 4.140 7 C 0.131 3.869 8 N -0.727 5.727 9 C 0.564 3.436 10 O -0.534 6.534 11 C -0.152 4.152 12 C -0.086 4.086 13 C -0.139 4.139 14 C -0.051 4.051 15 C -0.085 4.085 16 S -0.112 6.112 17 C -0.509 4.509 18 H 0.091 0.909 19 C 0.094 3.906 20 N -0.876 5.876 21 Si 0.858 3.142 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.017 4.017 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.399 0.601 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.272 0.728 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.573 -17.796 -8.456 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.004 4.004 4 C -0.075 4.075 5 C -0.196 4.196 6 C -0.197 4.197 7 C 0.007 3.993 8 N -0.382 5.382 9 C 0.352 3.648 10 O -0.411 6.411 11 C -0.157 4.157 12 C -0.105 4.105 13 C -0.159 4.159 14 C -0.072 4.072 15 C -0.196 4.196 16 S 0.122 5.878 17 C -0.656 4.656 18 H 0.109 0.891 19 C -0.115 4.115 20 N -0.512 5.512 21 Si 0.683 3.317 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.038 4.038 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.236 0.764 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.082 0.918 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.275 -16.413 -9.165 25.531 hybrid contribution -0.314 -0.229 0.837 0.922 sum -17.589 -16.642 -8.328 25.606 Atomic orbital electron populations 1.22741 0.80976 1.02753 1.00050 1.87847 1.19560 1.27583 1.95419 1.22433 0.92437 0.84827 1.00666 1.20795 0.93680 0.95293 0.97760 1.21820 1.00963 1.00854 0.96008 1.21824 1.01007 1.00854 0.96035 1.21236 0.79973 0.95361 1.02726 1.45850 1.06360 1.09149 1.76813 1.18364 0.86871 0.83903 0.75655 1.90778 1.74648 1.26431 1.49219 1.19822 0.92074 0.94617 1.09168 1.21164 0.95230 0.95593 0.98530 1.21046 0.93339 0.98622 1.02872 1.21897 1.00508 0.91315 0.93528 1.22198 0.95927 0.98959 1.02507 1.83064 1.61627 1.28814 1.14313 1.22245 1.43661 1.11931 0.87741 0.89075 1.24754 0.94769 0.96735 0.95202 1.69928 1.41976 1.26807 1.12462 0.86726 0.80072 0.82513 0.82403 1.19026 1.19802 1.16341 1.21896 0.92451 0.98323 0.91148 0.94077 0.89614 0.94038 0.92829 0.92869 0.92596 0.91348 0.92465 0.92383 0.91342 0.92571 0.91127 0.91178 0.76388 0.86446 0.85606 0.84899 0.91812 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.09 9.35 -35.23 -0.33 -3.42 16 3 C 0.07 0.54 4.80 37.16 0.18 0.72 16 4 C -0.07 -0.58 0.61 -154.51 -0.09 -0.67 16 5 C -0.14 -1.02 8.15 37.16 0.30 -0.71 16 6 C -0.14 -1.07 8.16 37.16 0.30 -0.77 16 7 C 0.13 1.30 4.56 -4.04 -0.02 1.28 16 8 N -0.73 -8.24 4.91 -61.24 -0.30 -8.54 16 9 C 0.56 8.98 7.77 -12.32 -0.10 8.88 16 10 O -0.53 -10.49 16.34 5.32 0.09 -10.41 16 11 C -0.15 -2.51 5.87 -105.00 -0.62 -3.13 16 12 C -0.09 -1.15 9.54 -39.12 -0.37 -1.52 16 13 C -0.14 -1.93 10.02 -39.67 -0.40 -2.32 16 14 C -0.05 -0.89 9.79 -39.25 -0.38 -1.28 16 15 C -0.09 -1.78 5.45 -39.00 -0.21 -1.99 16 16 S -0.11 -2.72 19.38 -107.50 -2.08 -4.81 16 17 C -0.51 -14.65 10.01 30.92 0.31 -14.34 16 18 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 19 C 0.09 2.73 5.50 -17.45 -0.10 2.63 16 20 N -0.88 -26.37 13.97 55.49 0.78 -25.59 16 21 Si 0.86 21.09 27.74 -169.99 -4.71 16.38 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.24 -5.68 6.74 56.52 0.38 -5.30 16 25 C -0.02 -0.33 9.34 -38.92 -0.36 -0.69 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 6.86 -51.93 -0.36 0.02 16 32 H 0.07 0.51 7.68 -51.93 -0.40 0.11 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.53 7.68 -51.93 -0.40 0.13 16 36 H 0.06 0.41 6.86 -51.93 -0.36 0.05 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.40 3.57 4.19 -40.82 -0.17 3.40 16 40 H 0.12 1.09 6.40 -52.49 -0.34 0.76 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.14 3.03 7.65 -52.49 -0.40 2.62 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -33.36 376.28 -7.99 -41.35 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.65 Total: 2.00 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -0.45 Total: -12.63 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.47 Total: -34.13 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.24 Total: -13.83 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.71 Total: 16.38 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.08 Total: -4.81 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.36 -7.99 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343550792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.509 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds