Wall clock time and date at job start Tue Mar 31 2020 14:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99893 * 2 1 4 4 C 1.53001 * 109.47355 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46808 * 60.00263 * 4 3 2 6 6 C 1.52996 * 109.47112 * 300.00144 * 4 3 2 7 7 C 1.53004 * 109.47164 * 179.97438 * 4 3 2 8 8 N 1.46492 * 109.47018 * 180.02562 * 7 4 3 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 4 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31631 * 119.99738 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00147 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46962 * 89.99772 * 21 19 17 23 23 H 1.48502 * 109.47274 * 210.00042 * 21 19 17 24 24 H 1.48499 * 109.47299 * 330.00031 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08999 * 109.47382 * 60.00246 * 1 2 3 27 27 H 1.09001 * 109.46413 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47173 * 299.99576 * 1 2 3 29 29 H 1.08998 * 109.47452 * 59.99751 * 3 2 1 30 30 H 1.09004 * 109.47329 * 299.99839 * 3 2 1 31 31 H 1.09002 * 109.46676 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.46830 * 299.99548 * 5 4 3 33 33 H 1.08994 * 109.47261 * 59.99792 * 5 4 3 34 34 H 1.08998 * 109.46733 * 299.99547 * 6 4 3 35 35 H 1.08999 * 109.47116 * 60.00151 * 6 4 3 36 36 H 1.09003 * 109.46647 * 179.97438 * 6 4 3 37 37 H 1.09005 * 109.46655 * 60.00207 * 7 4 3 38 38 H 1.09002 * 109.47164 * 300.00138 * 7 4 3 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 7 4 40 40 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 43 43 H 0.96995 * 120.00040 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4253 -1.2484 6 6 3.9864 0.4257 1.2502 7 6 4.1577 2.5825 0.0000 8 7 5.6180 2.4669 0.0000 9 6 6.3820 3.5773 0.0000 10 8 5.8592 4.6746 -0.0005 11 6 7.8561 3.4606 0.0006 12 6 8.4589 2.2008 0.0017 13 6 9.8352 2.0933 0.0027 14 6 10.6219 3.2292 -0.0040 15 6 10.0318 4.4897 0.0007 16 16 11.0396 5.9349 0.0001 17 6 11.1029 6.2645 1.7298 18 1 10.6554 5.5727 2.4282 19 6 11.7276 7.4127 2.1948 20 7 11.7752 7.6586 3.4871 21 14 12.5010 8.6095 0.9872 22 1 11.4936 9.6217 0.5795 23 1 13.6526 9.2894 1.6327 24 1 12.9715 7.8691 -0.2110 25 6 8.6480 4.6076 0.0001 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 5.0740 0.3397 -1.2481 32 1 3.5441 -0.5705 -1.2483 33 1 3.6661 0.9660 -2.1385 34 1 3.6644 0.9668 2.1399 35 1 3.5431 -0.5701 1.2501 36 1 5.0730 0.3393 1.2503 37 1 3.8357 3.1239 0.8896 38 1 3.8363 3.1229 -0.8904 39 1 6.0353 1.5913 0.0008 40 1 7.8481 1.3101 0.0017 41 1 10.2986 1.1178 0.0040 42 1 11.6981 3.1387 -0.0080 43 1 12.2116 8.4615 3.8122 44 1 8.1872 5.5843 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343550792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:59 Heat of formation + Delta-G solvation = -92.751174 kcal Electronic energy + Delta-G solvation = -24193.014144 eV Core-core repulsion = 20621.224678 eV Total energy + Delta-G solvation = -3571.789466 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39294 -39.83433 -39.05349 -37.39147 -34.72020 -34.50301 -32.20158 -31.92402 -28.34885 -28.17429 -27.94003 -27.86056 -26.16342 -24.49737 -23.59445 -21.71341 -20.45615 -19.92890 -18.97474 -17.60950 -17.36941 -17.14553 -16.86969 -16.75960 -16.42209 -16.37761 -16.14944 -15.55674 -15.06782 -15.02163 -14.92031 -14.71817 -14.33004 -14.11305 -13.99589 -13.63506 -13.60389 -13.14283 -13.07574 -12.76856 -12.70065 -12.68136 -12.44976 -12.28692 -11.87233 -11.86684 -11.84434 -11.55886 -11.24777 -11.20880 -10.93529 -10.59122 -10.30150 -9.92437 -9.75281 -9.14665 -8.54193 -6.28304 -0.21840 0.20302 1.06101 1.31158 1.43673 1.64725 1.76309 1.98093 2.21383 2.59338 2.83763 2.87720 2.96448 3.58937 3.72465 3.72896 3.89003 3.92437 4.01173 4.28463 4.31320 4.39262 4.43858 4.45073 4.56719 4.58461 4.62970 4.70554 4.76111 4.85240 4.88593 4.89579 5.00209 5.02687 5.11231 5.18656 5.28171 5.31374 5.40105 5.41491 5.43709 5.68493 5.82221 6.09903 6.21673 6.41787 6.88116 7.10027 8.59359 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.002343 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.778549 B =11946.966077 C =12383.659775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.072 3.928 4 C -0.066 4.066 5 C -0.137 4.137 6 C -0.139 4.139 7 C 0.130 3.870 8 N -0.702 5.702 9 C 0.562 3.438 10 O -0.581 6.581 11 C -0.157 4.157 12 C -0.060 4.060 13 C -0.121 4.121 14 C -0.058 4.058 15 C -0.120 4.120 16 S -0.115 6.115 17 C -0.524 4.524 18 H 0.046 0.954 19 C 0.039 3.961 20 N -0.919 5.919 21 Si 0.923 3.077 22 H -0.263 1.263 23 H -0.257 1.257 24 H -0.226 1.226 25 C -0.043 4.043 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.414 0.586 40 H 0.172 0.828 41 H 0.178 0.822 42 H 0.141 0.859 43 H 0.278 0.722 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 -20.936 -9.992 29.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.005 4.005 4 C -0.066 4.066 5 C -0.195 4.195 6 C -0.196 4.196 7 C 0.006 3.994 8 N -0.356 5.356 9 C 0.350 3.650 10 O -0.462 6.462 11 C -0.162 4.162 12 C -0.078 4.078 13 C -0.140 4.140 14 C -0.079 4.079 15 C -0.231 4.231 16 S 0.119 5.881 17 C -0.671 4.671 18 H 0.064 0.936 19 C -0.166 4.166 20 N -0.557 5.557 21 Si 0.743 3.257 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.150 1.150 25 C -0.065 4.065 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.254 0.746 40 H 0.190 0.810 41 H 0.195 0.805 42 H 0.158 0.842 43 H 0.087 0.913 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.631 -19.618 -10.706 28.467 hybrid contribution -0.392 0.513 1.340 1.487 sum -18.024 -19.105 -9.366 27.885 Atomic orbital electron populations 1.22898 0.79796 1.03737 1.00614 1.87811 1.20901 1.27695 1.95535 1.22430 0.92171 0.84908 1.01013 1.20697 0.93905 0.93677 0.98351 1.21813 1.01543 1.00683 0.95425 1.21823 1.01504 1.00749 0.95564 1.21328 0.78906 0.96936 1.02194 1.45647 1.06816 1.08533 1.74589 1.18359 0.86893 0.84229 0.75489 1.90761 1.75291 1.28475 1.51688 1.19935 0.92336 0.94914 1.09052 1.21738 0.95765 0.95739 0.94595 1.21569 0.93217 0.99346 0.99858 1.22091 1.01510 0.91018 0.93274 1.22082 0.95738 0.98589 1.06670 1.82609 1.63150 1.32012 1.10320 1.22381 1.43084 1.11303 0.90302 0.93577 1.25753 0.95189 0.98548 0.97113 1.70034 1.43245 1.27859 1.14533 0.85756 0.79522 0.79975 0.80402 1.18746 1.18125 1.14959 1.21645 0.92679 0.98515 0.93628 0.93417 0.88485 0.93591 0.92743 0.92398 0.91643 0.91235 0.92624 0.93014 0.91159 0.91751 0.92057 0.91491 0.74577 0.81024 0.80458 0.84152 0.91270 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -5.65 9.35 -148.98 -1.39 -7.05 16 3 C 0.07 0.94 4.80 71.98 0.35 1.28 16 4 C -0.07 -0.87 0.61 -52.18 -0.03 -0.90 16 5 C -0.14 -1.59 8.15 71.98 0.59 -1.00 16 6 C -0.14 -1.77 8.16 71.98 0.59 -1.18 16 7 C 0.13 2.39 4.56 86.38 0.39 2.79 16 8 N -0.70 -14.23 4.91 -465.94 -2.29 -16.51 16 9 C 0.56 17.50 7.77 86.79 0.67 18.18 16 10 O -0.58 -23.60 16.34 -3.88 -0.06 -23.66 16 11 C -0.16 -5.03 5.87 -20.11 -0.12 -5.15 16 12 C -0.06 -1.33 9.54 22.57 0.22 -1.11 16 13 C -0.12 -2.78 10.02 22.21 0.22 -2.56 16 14 C -0.06 -1.93 9.79 22.48 0.22 -1.71 16 15 C -0.12 -5.10 5.45 22.65 0.12 -4.98 16 16 S -0.11 -5.75 19.38 -56.49 -1.09 -6.85 16 17 C -0.52 -31.67 10.01 67.94 0.68 -30.99 16 18 H 0.05 3.09 8.02 -2.91 -0.02 3.06 16 19 C 0.04 2.33 5.50 84.84 0.47 2.79 16 20 N -0.92 -57.43 13.97 21.64 0.30 -57.13 16 21 Si 0.92 44.37 27.74 68.60 1.90 46.28 16 22 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.23 -10.31 6.74 99.48 0.67 -9.64 16 25 C -0.04 -1.78 9.34 22.70 0.21 -1.57 16 26 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.62 6.86 -2.39 -0.02 0.60 16 32 H 0.07 0.83 7.68 -2.39 -0.02 0.81 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.90 7.68 -2.39 -0.02 0.88 16 36 H 0.06 0.69 6.86 -2.39 -0.02 0.68 16 37 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.41 5.62 4.19 -92.71 -0.39 5.23 16 40 H 0.17 1.96 6.40 -2.91 -0.02 1.94 16 41 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 43 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 44 H 0.11 5.03 7.65 -2.91 -0.02 5.00 16 Total: -1.00 -78.82 376.28 3.76 -75.05 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.57 Total: 14.50 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 5.83 Total: -24.63 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -1.99 Total: -73.64 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.46 Total: -30.71 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.90 Total: 46.28 kcal Atomic # 16 Polarization: -5.75 SS G_CDS: -1.09 Total: -6.85 kcal Total: -78.82 3.76 -75.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343550792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.698 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds