Wall clock time and date at job start Tue Mar 31 2020 14:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 C 1.53000 * 109.46979 * 240.00228 * 2 1 3 5 5 H 1.09003 * 109.47294 * 60.00063 * 4 2 1 6 6 C 1.53004 * 109.46972 * 179.97438 * 4 2 1 7 7 O 1.42905 * 109.47140 * 184.99916 * 6 4 2 8 8 C 1.53002 * 109.47045 * 299.99773 * 4 2 1 9 9 N 1.46499 * 109.46905 * 174.99933 * 8 4 2 10 10 C 1.34780 * 119.99874 * 180.02562 * 9 8 4 11 11 O 1.21548 * 119.99764 * 0.02562 * 10 9 8 12 12 C 1.47857 * 120.00016 * 180.02562 * 10 9 8 13 13 C 1.39677 * 120.10142 * 359.72317 * 12 10 9 14 14 C 1.38041 * 120.03865 * 179.74789 * 13 12 10 15 15 C 1.38181 * 120.24542 * 0.55001 * 14 13 12 16 16 C 1.39188 * 120.19710 * 359.70454 * 15 14 13 17 17 S 1.76199 * 120.01805 * 179.97438 * 16 15 14 18 18 C 1.76201 * 100.00204 * 265.52946 * 17 16 15 19 19 H 1.07995 * 119.99893 * 5.11426 * 18 17 16 20 20 C 1.38729 * 119.99793 * 185.12211 * 18 17 16 21 21 N 1.31619 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99619 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47418 * 90.00108 * 22 20 18 24 24 H 1.48500 * 109.47148 * 209.99734 * 22 20 18 25 25 H 1.48501 * 109.47523 * 329.99630 * 22 20 18 26 26 C 1.38871 * 119.95935 * 0.02562 * 16 15 14 27 27 H 1.09007 * 109.47135 * 300.00045 * 1 2 3 28 28 H 1.09003 * 109.47056 * 59.99854 * 1 2 3 29 29 H 1.08998 * 109.47419 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47056 * 120.00146 * 2 1 3 31 31 H 1.08999 * 109.47003 * 60.00615 * 3 2 1 32 32 H 1.09007 * 109.46962 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47311 * 299.99989 * 3 2 1 34 34 H 1.09000 * 109.47069 * 304.99523 * 6 4 2 35 35 H 1.09001 * 109.47137 * 64.99768 * 6 4 2 36 36 H 0.96696 * 113.99905 * 180.02562 * 7 6 4 37 37 H 1.09002 * 109.47058 * 295.00008 * 8 4 2 38 38 H 1.08994 * 109.46548 * 55.00270 * 8 4 2 39 39 H 0.96996 * 120.00115 * 0.02562 * 9 8 4 40 40 H 1.08004 * 119.98086 * 0.02562 * 13 12 10 41 41 H 1.08001 * 119.88092 * 180.25979 * 14 13 12 42 42 H 1.07992 * 119.90202 * 179.72104 * 15 14 13 43 43 H 0.97007 * 120.00152 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.11917 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1393 6 6 3.5699 -0.7206 -1.2496 7 8 4.0462 -1.2900 -2.4707 8 6 1.5299 -2.1637 -1.2493 9 7 1.9174 -2.8186 -2.5011 10 6 1.5734 -4.1025 -2.7246 11 8 0.9413 -4.7167 -1.8876 12 6 1.9650 -4.7637 -3.9878 13 6 2.6865 -4.0580 -4.9534 14 6 3.0559 -4.6781 -6.1301 15 6 2.7049 -5.9941 -6.3633 16 6 1.9815 -6.7052 -5.4102 17 16 1.5358 -8.3828 -5.7128 18 6 -0.0809 -8.1552 -6.3755 19 1 -0.4556 -7.1583 -6.5546 20 6 -0.8724 -9.2566 -6.6669 21 7 -0.4156 -10.4715 -6.4489 22 14 -2.5861 -9.0153 -7.3701 23 1 -2.5132 -8.9870 -8.8531 24 1 -3.4604 -10.1355 -6.9389 25 1 -3.1471 -7.7316 -6.8775 26 6 1.6103 -6.0912 -4.2212 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 3.9329 0.3033 -1.1603 35 1 3.9337 -1.3098 -0.4078 36 1 5.0102 -1.3223 -2.5399 37 1 1.9646 -2.7028 -0.4075 38 1 0.4437 -2.1649 -1.1597 39 1 2.4216 -2.3283 -3.1692 40 1 2.9593 -3.0279 -4.7775 41 1 3.6173 -4.1313 -6.8732 42 1 2.9929 -6.4724 -7.2877 43 1 -0.9689 -11.2417 -6.6530 44 1 1.0493 -6.6407 -3.4797 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345923200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:27 Heat of formation + Delta-G solvation = -82.609672 kcal Electronic energy + Delta-G solvation = -24422.241658 eV Core-core repulsion = 20850.891960 eV Total energy + Delta-G solvation = -3571.349698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00246 -38.73087 -37.53723 -36.13409 -34.24662 -32.46537 -31.16931 -30.46620 -29.70687 -28.14590 -25.57520 -25.51365 -23.49025 -22.54603 -21.90200 -20.65244 -19.84140 -18.22010 -17.66084 -17.30532 -16.15994 -16.02010 -15.51360 -15.09039 -15.04210 -14.81202 -14.68842 -14.35976 -14.13779 -13.95701 -13.46280 -13.25301 -12.98925 -12.96006 -12.80347 -12.53580 -12.20447 -12.02459 -11.83271 -11.55300 -11.26917 -11.10517 -11.08165 -11.06641 -11.01645 -10.84306 -10.65264 -10.26793 -9.90633 -9.62825 -9.12111 -8.97340 -8.88487 -8.47089 -7.95521 -6.66089 -6.24357 -3.97727 1.28407 1.76162 3.14298 3.23881 3.24561 3.28106 3.32160 3.52885 3.79425 4.16350 4.28327 4.34170 4.43090 4.59252 4.68726 4.96253 4.96578 5.06789 5.11138 5.11999 5.21737 5.24287 5.30794 5.33452 5.37291 5.43946 5.49624 5.52772 5.62695 5.68404 5.74286 5.84217 5.94899 5.96933 5.99150 6.10690 6.35143 6.60174 6.70935 6.74025 7.01994 7.22739 7.29364 7.61901 7.79836 8.37265 8.49776 9.21455 10.82383 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.002654 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.054761 B =10546.211913 C =11382.941531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 C -0.151 4.151 4 C -0.097 4.097 5 H 0.085 0.915 6 C 0.078 3.922 7 O -0.574 6.574 8 C 0.126 3.874 9 N -0.719 5.719 10 C 0.559 3.441 11 O -0.544 6.544 12 C -0.152 4.152 13 C -0.087 4.087 14 C -0.143 4.143 15 C -0.057 4.057 16 C -0.108 4.108 17 S -0.037 6.037 18 C -0.518 4.518 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.871 5.871 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.020 4.020 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.383 0.617 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.409 0.591 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.269 0.731 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.119 24.233 9.874 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 C -0.208 4.208 4 C -0.116 4.116 5 H 0.104 0.896 6 C 0.001 3.999 7 O -0.380 6.380 8 C 0.002 3.998 9 N -0.375 5.375 10 C 0.347 3.653 11 O -0.422 6.422 12 C -0.157 4.157 13 C -0.106 4.106 14 C -0.163 4.163 15 C -0.078 4.078 16 C -0.219 4.219 17 S 0.198 5.802 18 C -0.665 4.665 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.196 1.196 26 C -0.042 4.042 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.231 0.769 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.248 0.752 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.079 0.921 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.561 22.528 10.532 26.301 hybrid contribution -0.846 1.633 -0.765 1.992 sum 7.715 24.161 9.767 27.179 Atomic orbital electron populations 1.21938 0.94401 1.02643 1.02086 1.20994 0.96494 0.96043 0.96952 1.21933 1.01014 0.95657 1.02196 1.21508 0.94211 0.96039 0.99870 0.89631 1.22338 0.94103 0.96933 0.86571 1.86268 1.27183 1.85089 1.39456 1.21359 1.00142 0.91065 0.87254 1.45973 1.58084 1.12663 1.20825 1.18426 0.78862 0.81354 0.86620 1.90752 1.40165 1.64622 1.46664 1.19891 1.04857 0.95834 0.95142 1.21198 0.96968 0.98829 0.93596 1.21051 1.02279 0.95488 0.97454 1.21936 0.94475 0.93243 0.98146 1.22818 1.00274 1.03487 0.95308 1.83573 1.20220 0.94550 1.81881 1.22839 0.99883 0.95722 1.48083 0.90644 1.25000 0.98884 0.94445 0.95298 1.69990 1.37393 0.97755 1.45491 0.86122 0.81958 0.78169 0.79088 1.20196 1.20675 1.19564 1.21936 0.93833 0.92246 0.96171 0.92317 0.92402 0.91782 0.90601 0.92333 0.92443 0.92401 0.93024 0.93442 0.76914 0.91851 0.91144 0.75159 0.86213 0.85978 0.85190 0.92107 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.85 37.15 0.33 -0.68 16 2 C -0.09 -0.52 2.51 -90.62 -0.23 -0.75 16 3 C -0.15 -0.73 8.85 37.16 0.33 -0.40 16 4 C -0.10 -0.73 1.88 -90.62 -0.17 -0.90 16 5 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 6 C 0.08 0.50 6.21 37.16 0.23 0.73 16 7 O -0.57 -4.02 10.88 -35.23 -0.38 -4.40 16 8 C 0.13 1.39 4.85 -4.04 -0.02 1.37 16 9 N -0.72 -9.47 4.96 -61.25 -0.30 -9.77 16 10 C 0.56 9.86 7.77 -12.32 -0.10 9.76 16 11 O -0.54 -11.51 16.34 5.32 0.09 -11.42 16 12 C -0.15 -2.76 5.87 -105.00 -0.62 -3.38 16 13 C -0.09 -1.30 9.54 -39.12 -0.37 -1.67 16 14 C -0.14 -2.17 10.02 -39.67 -0.40 -2.57 16 15 C -0.06 -1.06 9.79 -39.25 -0.38 -1.44 16 16 C -0.11 -2.40 5.45 -38.99 -0.21 -2.62 16 17 S -0.04 -0.97 21.41 -107.50 -2.30 -3.27 16 18 C -0.52 -14.94 9.46 30.91 0.29 -14.65 16 19 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 20 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 21 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 22 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 26 C -0.02 -0.43 9.34 -38.92 -0.36 -0.80 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 6.32 -51.93 -0.33 0.16 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.24 6.32 -51.93 -0.33 -0.08 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.25 6.17 -51.93 -0.32 -0.07 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.38 1.27 9.12 45.56 0.42 1.68 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 39 H 0.41 4.69 4.31 -40.82 -0.18 4.52 16 40 H 0.12 1.39 6.40 -52.48 -0.34 1.05 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.14 3.19 7.65 -52.49 -0.40 2.79 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -34.41 373.38 -8.91 -43.32 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.57 Total: 4.26 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -1.78 Total: -16.03 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.43 Total: -34.92 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.30 Total: -15.82 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.30 Total: -3.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.41 -8.91 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345923200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.293 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds