Wall clock time and date at job start Tue Mar 31 2020 14:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 C 1.53000 * 109.46979 * 240.00228 * 2 1 3 5 5 H 1.09003 * 109.47294 * 60.00063 * 4 2 1 6 6 C 1.53004 * 109.46972 * 179.97438 * 4 2 1 7 7 O 1.42905 * 109.47140 * 184.99916 * 6 4 2 8 8 C 1.53002 * 109.47045 * 299.99773 * 4 2 1 9 9 N 1.46499 * 109.46905 * 174.99933 * 8 4 2 10 10 C 1.34780 * 119.99874 * 180.02562 * 9 8 4 11 11 O 1.21548 * 119.99764 * 0.02562 * 10 9 8 12 12 C 1.47857 * 120.00016 * 180.02562 * 10 9 8 13 13 C 1.39677 * 120.10142 * 359.72317 * 12 10 9 14 14 C 1.38041 * 120.03865 * 179.74789 * 13 12 10 15 15 C 1.38181 * 120.24542 * 0.55001 * 14 13 12 16 16 C 1.39188 * 120.19710 * 359.70454 * 15 14 13 17 17 S 1.76199 * 120.01805 * 179.97438 * 16 15 14 18 18 C 1.76201 * 100.00204 * 265.52946 * 17 16 15 19 19 H 1.07995 * 119.99893 * 5.11426 * 18 17 16 20 20 C 1.38729 * 119.99793 * 185.12211 * 18 17 16 21 21 N 1.31619 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99619 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47418 * 90.00108 * 22 20 18 24 24 H 1.48500 * 109.47148 * 209.99734 * 22 20 18 25 25 H 1.48501 * 109.47523 * 329.99630 * 22 20 18 26 26 C 1.38871 * 119.95935 * 0.02562 * 16 15 14 27 27 H 1.09007 * 109.47135 * 300.00045 * 1 2 3 28 28 H 1.09003 * 109.47056 * 59.99854 * 1 2 3 29 29 H 1.08998 * 109.47419 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47056 * 120.00146 * 2 1 3 31 31 H 1.08999 * 109.47003 * 60.00615 * 3 2 1 32 32 H 1.09007 * 109.46962 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47311 * 299.99989 * 3 2 1 34 34 H 1.09000 * 109.47069 * 304.99523 * 6 4 2 35 35 H 1.09001 * 109.47137 * 64.99768 * 6 4 2 36 36 H 0.96696 * 113.99905 * 180.02562 * 7 6 4 37 37 H 1.09002 * 109.47058 * 295.00008 * 8 4 2 38 38 H 1.08994 * 109.46548 * 55.00270 * 8 4 2 39 39 H 0.96996 * 120.00115 * 0.02562 * 9 8 4 40 40 H 1.08004 * 119.98086 * 0.02562 * 13 12 10 41 41 H 1.08001 * 119.88092 * 180.25979 * 14 13 12 42 42 H 1.07992 * 119.90202 * 179.72104 * 15 14 13 43 43 H 0.97007 * 120.00152 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.11917 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6766 -0.2073 -2.1393 6 6 3.5699 -0.7206 -1.2496 7 8 4.0462 -1.2900 -2.4707 8 6 1.5299 -2.1637 -1.2493 9 7 1.9174 -2.8186 -2.5011 10 6 1.5734 -4.1025 -2.7246 11 8 0.9413 -4.7167 -1.8876 12 6 1.9650 -4.7637 -3.9878 13 6 2.6865 -4.0580 -4.9534 14 6 3.0559 -4.6781 -6.1301 15 6 2.7049 -5.9941 -6.3633 16 6 1.9815 -6.7052 -5.4102 17 16 1.5358 -8.3828 -5.7128 18 6 -0.0809 -8.1552 -6.3755 19 1 -0.4556 -7.1583 -6.5546 20 6 -0.8724 -9.2566 -6.6669 21 7 -0.4156 -10.4715 -6.4489 22 14 -2.5861 -9.0153 -7.3701 23 1 -2.5132 -8.9870 -8.8531 24 1 -3.4604 -10.1355 -6.9389 25 1 -3.1471 -7.7316 -6.8775 26 6 1.6103 -6.0912 -4.2212 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 3.9329 0.3033 -1.1603 35 1 3.9337 -1.3098 -0.4078 36 1 5.0102 -1.3223 -2.5399 37 1 1.9646 -2.7028 -0.4075 38 1 0.4437 -2.1649 -1.1597 39 1 2.4216 -2.3283 -3.1692 40 1 2.9593 -3.0279 -4.7775 41 1 3.6173 -4.1313 -6.8732 42 1 2.9929 -6.4724 -7.2877 43 1 -0.9689 -11.2417 -6.6530 44 1 1.0493 -6.6407 -3.4797 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345923200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:26 Heat of formation + Delta-G solvation = -106.488168 kcal Electronic energy + Delta-G solvation = -24423.277107 eV Core-core repulsion = 20850.891960 eV Total energy + Delta-G solvation = -3572.385147 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26787 -39.62272 -38.82044 -36.62166 -35.38746 -34.65892 -32.45801 -31.91330 -30.53619 -28.69454 -27.74909 -26.37191 -24.60903 -23.69657 -22.99104 -21.74592 -20.76008 -19.90074 -18.96051 -18.16074 -17.30528 -17.09973 -16.93924 -16.71917 -16.51956 -15.82035 -15.66515 -15.51211 -15.22968 -14.91461 -14.82484 -14.60400 -14.22015 -13.93789 -13.63828 -13.41732 -13.25599 -13.06787 -12.99007 -12.96779 -12.69301 -12.63197 -12.41671 -12.37602 -11.83770 -11.75305 -11.57857 -11.40161 -11.24907 -11.07630 -10.75998 -10.71057 -10.18157 -9.85196 -9.68450 -8.80747 -8.39630 -6.19631 -0.16404 0.26204 1.28887 1.36906 1.45432 1.64992 1.82732 2.13528 2.25062 2.81848 2.93165 3.25383 3.41638 3.65166 3.71904 3.93644 3.95683 4.06269 4.11938 4.19329 4.37045 4.39156 4.46718 4.49751 4.59620 4.62019 4.70035 4.78202 4.81728 4.88742 4.93362 4.97763 5.04866 5.11450 5.25238 5.28085 5.33218 5.38229 5.42032 5.47807 5.50209 5.52308 5.87628 6.15398 6.57416 6.96934 7.00522 7.24189 8.67520 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.002654 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.054761 B =10546.211913 C =11382.941531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.082 4.082 3 C -0.147 4.147 4 C -0.088 4.088 5 H 0.087 0.913 6 C 0.079 3.921 7 O -0.591 6.591 8 C 0.120 3.880 9 N -0.694 5.694 10 C 0.554 3.446 11 O -0.591 6.591 12 C -0.157 4.157 13 C -0.061 4.061 14 C -0.120 4.120 15 C -0.062 4.062 16 C -0.129 4.129 17 S -0.094 6.094 18 C -0.536 4.536 19 H 0.066 0.934 20 C 0.019 3.981 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.046 4.046 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.400 0.600 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.420 0.580 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.137 0.863 43 H 0.274 0.726 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.282 28.317 8.894 31.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.101 4.101 3 C -0.204 4.204 4 C -0.107 4.107 5 H 0.105 0.895 6 C 0.002 3.998 7 O -0.400 6.400 8 C -0.003 4.003 9 N -0.349 5.349 10 C 0.342 3.658 11 O -0.473 6.473 12 C -0.162 4.162 13 C -0.079 4.079 14 C -0.139 4.139 15 C -0.083 4.083 16 C -0.240 4.240 17 S 0.140 5.860 18 C -0.683 4.683 19 H 0.084 0.916 20 C -0.186 4.186 21 N -0.542 5.542 22 Si 0.814 3.186 23 H -0.185 1.185 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.068 4.068 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.251 0.749 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.262 0.738 40 H 0.185 0.815 41 H 0.194 0.806 42 H 0.155 0.845 43 H 0.083 0.917 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.775 26.659 9.543 29.956 hybrid contribution -1.093 0.514 -0.394 1.271 sum 8.682 27.174 9.149 29.958 Atomic orbital electron populations 1.21951 0.95085 1.01631 1.02582 1.20979 0.95904 0.96980 0.96286 1.21905 1.01656 0.94315 1.02533 1.21473 0.95393 0.93200 1.00645 0.89457 1.22339 0.92855 0.98225 0.86419 1.86170 1.29004 1.85267 1.39582 1.21554 0.99713 0.93198 0.85832 1.45862 1.56485 1.10944 1.21635 1.18485 0.78704 0.82549 0.86073 1.90731 1.42532 1.66011 1.48058 1.19990 1.05201 0.94587 0.96400 1.21684 0.93911 1.00384 0.91966 1.21547 1.00547 0.93649 0.98167 1.22076 0.93899 0.94852 0.97510 1.22492 1.03288 1.01135 0.97102 1.83450 1.20014 1.00267 1.82241 1.23057 1.01021 0.95580 1.48643 0.91567 1.26017 1.03232 0.93963 0.95416 1.70109 1.39105 0.98628 1.46391 0.85037 0.76414 0.78185 0.78916 1.18536 1.19646 1.19451 1.21612 0.95480 0.94060 0.95672 0.91443 0.92336 0.93527 0.90474 0.91816 0.91366 0.92306 0.90749 0.93613 0.74902 0.92740 0.92234 0.73771 0.81475 0.80615 0.84515 0.91678 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 8.85 71.98 0.64 -1.25 16 2 C -0.08 -0.84 2.51 -10.79 -0.03 -0.86 16 3 C -0.15 -0.99 8.85 71.98 0.64 -0.35 16 4 C -0.09 -1.12 1.88 -10.79 -0.02 -1.14 16 5 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 6 C 0.08 0.74 6.21 71.98 0.45 1.19 16 7 O -0.59 -5.91 10.88 -148.98 -1.62 -7.54 16 8 C 0.12 2.55 4.85 86.38 0.42 2.97 16 9 N -0.69 -17.09 4.96 -465.96 -2.31 -19.40 16 10 C 0.55 19.53 7.77 86.79 0.67 20.21 16 11 O -0.59 -26.25 16.34 -3.87 -0.06 -26.31 16 12 C -0.16 -5.60 5.87 -20.11 -0.12 -5.72 16 13 C -0.06 -1.57 9.54 22.57 0.22 -1.36 16 14 C -0.12 -3.10 10.02 22.21 0.22 -2.88 16 15 C -0.06 -2.25 9.79 22.48 0.22 -2.03 16 16 C -0.13 -5.93 5.45 22.65 0.12 -5.81 16 17 S -0.09 -5.31 21.41 -56.49 -1.21 -6.52 16 18 C -0.54 -32.25 9.46 67.94 0.64 -31.61 16 19 H 0.07 3.96 7.79 -2.91 -0.02 3.93 16 20 C 0.02 1.11 5.49 84.84 0.47 1.57 16 21 N -0.91 -55.62 13.22 21.64 0.29 -55.34 16 22 Si 0.99 45.61 29.55 68.60 2.03 47.64 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 C -0.05 -2.09 9.34 22.70 0.21 -1.88 16 27 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.72 6.32 -2.39 -0.02 0.71 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.32 6.32 -2.38 -0.02 0.31 16 33 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.07 0.40 6.17 -2.39 -0.01 0.38 16 35 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.40 0.99 9.12 -74.06 -0.68 0.31 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.42 6.17 -2.39 -0.01 1.40 16 39 H 0.42 8.15 4.31 -92.71 -0.40 7.75 16 40 H 0.17 2.79 6.40 -2.91 -0.02 2.77 16 41 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 44 H 0.10 5.16 7.65 -2.91 -0.02 5.14 16 Total: -1.00 -80.91 373.38 1.81 -79.09 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.05 Total: 17.32 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 4.75 Total: -28.95 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -2.02 Total: -74.73 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.68 Total: -33.85 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.21 Total: -6.52 kcal Total: -80.91 1.81 -79.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345923200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.393 kcal (2) G-P(sol) polarization free energy of solvation -80.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds