Wall clock time and date at job start Tue Mar 31 2020 14:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46896 * 2 1 4 4 C 1.53000 * 109.47243 * 120.00255 * 2 1 3 5 5 H 1.08997 * 109.46932 * 184.47150 * 4 2 1 6 6 C 1.52996 * 109.46834 * 64.47308 * 4 2 1 7 7 O 1.42897 * 109.47102 * 63.17772 * 6 4 2 8 8 C 1.53000 * 109.47192 * 304.47162 * 4 2 1 9 9 N 1.46498 * 109.47082 * 185.00162 * 8 4 2 10 10 C 1.34770 * 119.99831 * 180.02562 * 9 8 4 11 11 O 1.21550 * 120.00516 * 359.97438 * 10 9 8 12 12 C 1.47863 * 119.99993 * 180.02562 * 10 9 8 13 13 C 1.39680 * 120.09974 * 359.71942 * 12 10 9 14 14 C 1.38041 * 120.03832 * 179.78973 * 13 12 10 15 15 C 1.38185 * 120.24388 * 0.47112 * 14 13 12 16 16 C 1.39187 * 120.20142 * 359.78417 * 15 14 13 17 17 S 1.76200 * 120.02202 * 179.97438 * 16 15 14 18 18 C 1.76200 * 100.00056 * 265.85769 * 17 16 15 19 19 H 1.07993 * 119.99881 * 5.09164 * 18 17 16 20 20 C 1.38731 * 119.99597 * 185.08955 * 18 17 16 21 21 N 1.31621 * 120.00374 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99655 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47320 * 60.00115 * 22 20 18 24 24 H 1.48492 * 109.47106 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47009 * 300.00066 * 22 20 18 26 26 C 1.38882 * 119.95605 * 359.97438 * 16 15 14 27 27 H 1.08998 * 109.47156 * 299.99464 * 1 2 3 28 28 H 1.09000 * 109.47145 * 59.99763 * 1 2 3 29 29 H 1.08997 * 109.46959 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47156 * 240.00536 * 2 1 3 31 31 H 1.08993 * 109.47122 * 294.33161 * 3 2 1 32 32 H 1.09005 * 109.46753 * 54.33107 * 3 2 1 33 33 H 1.08999 * 109.46892 * 174.32767 * 3 2 1 34 34 H 1.09007 * 109.46748 * 183.17593 * 6 4 2 35 35 H 1.08997 * 109.47016 * 303.17424 * 6 4 2 36 36 H 0.96708 * 113.99364 * 179.97438 * 7 6 4 37 37 H 1.09002 * 109.46820 * 305.00079 * 8 4 2 38 38 H 1.09001 * 109.47046 * 64.99695 * 8 4 2 39 39 H 0.96996 * 119.99963 * 0.02562 * 9 8 4 40 40 H 1.07997 * 119.97565 * 0.02562 * 13 12 10 41 41 H 1.07996 * 119.88084 * 180.20894 * 14 13 12 42 42 H 1.07998 * 119.89865 * 179.76538 * 15 14 13 43 43 H 0.96992 * 120.00299 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.11402 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1271 -0.6524 1.2901 6 6 1.6240 -2.1926 1.1941 7 8 2.2439 -2.8211 0.0705 8 6 1.4403 -0.0680 2.4960 9 7 2.0197 -0.6797 3.6944 10 6 1.6373 -0.2604 4.9169 11 8 0.8122 0.6254 5.0251 12 6 2.2225 -0.8774 6.1265 13 6 3.1674 -1.8989 6.0047 14 6 3.7161 -2.4710 7.1349 15 6 3.3271 -2.0438 8.3901 16 6 2.3824 -1.0303 8.5233 17 16 1.8894 -0.4897 10.1262 18 6 0.4604 -1.4933 10.3615 19 1 0.2011 -2.2437 9.6294 20 6 -0.3315 -1.3195 11.4872 21 7 -0.0157 -0.4046 12.3792 22 14 -1.8469 -2.3830 11.7363 23 1 -1.4447 -3.8112 11.7976 24 1 -2.5159 -2.0017 13.0060 25 1 -2.7850 -2.1811 10.6030 26 6 1.8287 -0.4454 7.3918 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.7619 1.9262 -0.9363 32 1 1.5960 1.9848 0.8349 33 1 3.1252 1.4442 0.1016 34 1 1.9382 -2.6935 2.1098 35 1 0.5405 -2.2603 1.0963 36 1 2.0245 -3.7580 -0.0267 37 1 1.6621 0.9992 2.4892 38 1 0.3602 -0.2146 2.4991 39 1 2.6785 -1.3863 3.6081 40 1 3.4716 -2.2386 5.0258 41 1 4.4490 -3.2582 7.0377 42 1 3.7572 -2.4979 9.2706 43 1 -0.5695 -0.2829 13.1661 44 1 1.0958 0.3414 7.4922 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345923201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:30 Heat of formation + Delta-G solvation = -82.986558 kcal Electronic energy + Delta-G solvation = -24293.477829 eV Core-core repulsion = 20722.111789 eV Total energy + Delta-G solvation = -3571.366041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18296 -38.84766 -37.69358 -36.09325 -34.37750 -32.51366 -31.22842 -30.57500 -29.73490 -27.59984 -26.11736 -25.57422 -23.66615 -22.90284 -22.15143 -20.51452 -19.46895 -18.23789 -17.76763 -17.22965 -16.62396 -15.83289 -15.72341 -15.32366 -15.20674 -14.85819 -14.62113 -14.48354 -14.19760 -13.69217 -13.51652 -13.33453 -13.25329 -12.94658 -12.89977 -12.47783 -12.35968 -12.14255 -11.69166 -11.66356 -11.25974 -11.17148 -11.13398 -11.07833 -10.82831 -10.76501 -10.71353 -10.27569 -9.99995 -9.79293 -9.18327 -9.15762 -9.01880 -8.59911 -8.04408 -6.72022 -6.28948 -4.03136 1.14746 1.64989 3.02126 3.07816 3.20853 3.22969 3.26161 3.45923 3.74639 4.08020 4.25240 4.31327 4.41027 4.57949 4.81627 4.88873 4.99150 5.01166 5.06572 5.07685 5.11542 5.22036 5.24144 5.37247 5.39875 5.46890 5.57165 5.60486 5.62365 5.69327 5.76209 5.84227 5.85964 5.97511 6.02554 6.08374 6.23686 6.33460 6.56858 6.61897 6.91824 7.17409 7.21094 7.45029 7.56633 8.26569 8.31808 9.16628 10.77785 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.002565 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.187758 B =10912.514174 C =11255.743892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.083 4.083 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.085 0.915 6 C 0.075 3.925 7 O -0.572 6.572 8 C 0.122 3.878 9 N -0.734 5.734 10 C 0.563 3.437 11 O -0.533 6.533 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.106 4.106 17 S -0.035 6.035 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.018 4.018 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.380 0.620 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.398 0.602 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.270 0.730 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.000 -4.183 -23.846 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.102 4.102 3 C -0.210 4.210 4 C -0.113 4.113 5 H 0.103 0.897 6 C -0.002 4.002 7 O -0.377 6.377 8 C -0.001 4.001 9 N -0.388 5.388 10 C 0.352 3.648 11 O -0.410 6.410 12 C -0.160 4.160 13 C -0.110 4.110 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.217 4.217 17 S 0.200 5.800 18 C -0.668 4.668 19 H 0.093 0.907 20 C -0.135 4.135 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.040 4.040 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.227 0.773 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.234 0.766 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.030 -2.024 -22.914 23.780 hybrid contribution -1.373 -2.520 -0.636 2.940 sum 4.657 -4.545 -23.549 24.432 Atomic orbital electron populations 1.22000 0.95186 1.01883 1.02233 1.20999 0.95874 0.95958 0.97375 1.21941 1.01150 0.95881 1.02069 1.21436 1.01632 0.93440 0.94812 0.89704 1.22297 0.96691 0.92981 0.88271 1.86452 1.73938 1.28202 1.49109 1.21483 0.98454 0.97996 0.82199 1.45972 1.45955 1.41378 1.05532 1.18410 0.81269 0.82103 0.83054 1.90777 1.32965 1.30492 1.86792 1.19865 1.01943 1.00815 0.93360 1.21122 0.96027 0.95536 0.98279 1.21057 1.01375 1.01148 0.92490 1.21971 0.94662 0.93678 0.97301 1.22863 0.98746 0.98381 1.01705 1.83611 1.34570 1.55266 1.06571 1.22789 1.11551 1.21824 1.10612 0.90686 1.24999 0.97900 0.95665 0.94980 1.69971 1.38566 1.31535 1.10477 0.86178 0.81310 0.80084 0.77761 1.19830 1.20719 1.19791 1.21958 0.95595 0.96686 0.89774 0.92079 0.92528 0.92558 0.89937 0.92527 0.92213 0.92560 0.93593 0.92938 0.77347 0.90413 0.90889 0.76647 0.86649 0.85861 0.85053 0.91980 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.47 37.16 0.31 -0.82 16 2 C -0.08 -0.62 2.64 -90.62 -0.24 -0.85 16 3 C -0.15 -1.10 8.80 37.16 0.33 -0.77 16 4 C -0.09 -0.73 1.93 -90.62 -0.17 -0.91 16 5 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 6 C 0.08 0.54 6.17 37.16 0.23 0.77 16 7 O -0.57 -4.08 13.04 -35.23 -0.46 -4.54 16 8 C 0.12 1.21 4.28 -4.04 -0.02 1.20 16 9 N -0.73 -8.29 5.20 -61.25 -0.32 -8.61 16 10 C 0.56 9.00 7.77 -12.32 -0.10 8.91 16 11 O -0.53 -10.52 16.34 5.32 0.09 -10.43 16 12 C -0.15 -2.59 5.87 -104.99 -0.62 -3.21 16 13 C -0.09 -1.22 9.54 -39.12 -0.37 -1.60 16 14 C -0.14 -1.99 10.02 -39.67 -0.40 -2.39 16 15 C -0.05 -0.98 9.79 -39.25 -0.38 -1.36 16 16 C -0.11 -2.27 5.45 -38.99 -0.21 -2.48 16 17 S -0.03 -0.90 21.41 -107.50 -2.30 -3.20 16 18 C -0.52 -14.68 9.46 30.91 0.29 -14.39 16 19 H 0.07 2.09 7.79 -52.49 -0.41 1.68 16 20 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -25.48 13.22 55.49 0.73 -24.74 16 22 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 27 H 0.06 0.48 6.47 -51.93 -0.34 0.15 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.40 6.48 -51.93 -0.34 0.06 16 30 H 0.08 0.66 7.65 -51.93 -0.40 0.26 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.46 6.72 -51.93 -0.35 0.11 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.31 7.11 -51.92 -0.37 -0.06 16 35 H 0.05 0.37 6.40 -51.93 -0.33 0.03 16 36 H 0.38 1.21 9.12 45.56 0.42 1.62 16 37 H 0.08 0.83 6.45 -51.93 -0.33 0.50 16 38 H 0.07 0.78 6.65 -51.93 -0.35 0.44 16 39 H 0.40 3.49 5.68 -40.82 -0.23 3.26 16 40 H 0.12 1.09 6.40 -52.49 -0.34 0.75 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.14 3.07 7.65 -52.49 -0.40 2.67 16 LS Contribution 372.67 15.07 5.62 5.62 Total: -1.00 -33.60 372.67 -8.91 -42.51 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.43 Total: 3.66 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -1.81 Total: -16.67 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.41 Total: -33.35 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.37 Total: -14.97 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.60 -8.91 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345923201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.477 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds