Wall clock time and date at job start Tue Mar 31 2020 14:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 C 1.52993 * 109.47024 * 239.99817 * 2 1 3 5 5 C 1.50696 * 109.47429 * 60.00131 * 4 2 1 6 6 H 1.07999 * 119.99822 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00339 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00355 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99771 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47174 * 89.99890 * 9 7 5 11 11 H 1.48501 * 109.47062 * 209.99841 * 9 7 5 12 12 H 1.48503 * 109.47284 * 329.99536 * 9 7 5 13 13 C 1.52996 * 109.46975 * 119.99538 * 2 1 3 14 14 N 1.46500 * 109.47368 * 300.00161 * 13 2 1 15 15 C 1.34779 * 120.00165 * 179.97438 * 14 13 2 16 16 O 1.21282 * 119.99927 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00033 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.46866 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 15 20 20 O 1.21453 * 119.99973 * 359.97438 * 19 18 17 21 21 C 1.41231 * 119.99910 * 179.97438 * 19 18 17 22 22 C 1.37187 * 125.48038 * 180.02562 * 21 19 18 23 23 C 1.37201 * 113.24327 * 180.02562 * 22 21 19 24 24 C 1.34023 * 115.14715 * 359.97438 * 23 22 21 25 25 S 1.70606 * 110.99900 * 359.72925 * 24 23 22 26 26 H 1.09001 * 109.47375 * 300.00092 * 1 2 3 27 27 H 1.09002 * 109.47045 * 60.00167 * 1 2 3 28 28 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47006 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47097 * 299.99801 * 3 2 1 31 31 H 1.09001 * 109.47142 * 59.99766 * 3 2 1 32 32 H 1.09004 * 109.46862 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47250 * 300.00041 * 4 2 1 34 34 H 0.97005 * 120.00091 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47261 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47368 * 60.00217 * 13 2 1 37 37 H 0.96996 * 119.99985 * 0.02562 * 14 13 2 38 38 H 1.08993 * 109.47512 * 60.00410 * 17 15 14 39 39 H 1.09000 * 109.47247 * 300.00119 * 17 15 14 40 40 H 1.09000 * 109.47050 * 299.99952 * 18 17 15 41 41 H 1.09001 * 109.46801 * 60.00064 * 18 17 15 42 42 H 1.08003 * 123.38240 * 359.97438 * 22 21 19 43 43 H 1.07998 * 122.42466 * 180.02562 * 23 22 21 44 44 H 1.07999 * 124.49714 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8711 -0.4817 -3.7319 8 7 1.4324 0.1379 -4.8058 9 14 2.9451 -2.0006 -3.9032 10 1 2.0865 -3.2113 -3.9492 11 1 3.7374 -1.9078 -5.1557 12 1 3.8651 -2.0900 -2.7410 13 6 2.0399 -0.7211 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8767 -0.4912 3.6696 16 8 2.5740 -1.4773 3.7809 17 6 1.3748 0.2196 4.9000 18 6 1.8847 -0.5017 6.1493 19 6 1.3834 0.2095 7.3797 20 8 0.6862 1.1977 7.2682 21 6 1.7242 -0.2732 8.6624 22 6 1.3311 0.2835 9.8531 23 6 1.8075 -0.3902 10.9492 24 6 2.5640 -1.4619 10.6746 25 16 2.7141 -1.6890 8.9904 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7216 -1.2489 33 1 1.6766 -1.7489 -1.2492 34 1 1.6668 -0.1936 -5.6868 35 1 3.1299 -0.7216 1.2491 36 1 1.6766 -1.7488 1.2494 37 1 0.9936 0.7579 2.3564 38 1 0.2849 0.2204 4.9000 39 1 1.7389 1.2470 4.9000 40 1 1.5210 -1.5292 6.1495 41 1 2.9748 -0.5021 6.1491 42 1 0.7098 1.1643 9.9208 43 1 1.5881 -0.0799 11.9601 44 1 3.0145 -2.1000 11.4205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345980941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:55 Heat of formation + Delta-G solvation = -82.267883 kcal Electronic energy + Delta-G solvation = -23931.459205 eV Core-core repulsion = 20360.124328 eV Total energy + Delta-G solvation = -3571.334877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20096 -40.50906 -38.72958 -38.28435 -35.18615 -34.13283 -33.80899 -31.34263 -29.77259 -28.30516 -27.98413 -26.88554 -25.21627 -24.07162 -21.95389 -21.15256 -20.20920 -19.72704 -18.91427 -18.83650 -17.63697 -17.12823 -16.99134 -16.67140 -16.11921 -16.10144 -15.89622 -15.29686 -15.22906 -15.02337 -14.50569 -14.33600 -14.19811 -14.10157 -13.80707 -13.70670 -13.49985 -13.15510 -12.95680 -12.91795 -12.81935 -12.60392 -12.29871 -12.20318 -12.15893 -11.83612 -11.77169 -11.51034 -11.29344 -10.96874 -10.93409 -10.79672 -10.70483 -10.01852 -9.89627 -9.55568 -8.22249 -6.22488 -0.72243 0.54544 0.96581 1.18212 1.36027 1.38581 1.48746 1.66998 1.93444 2.21091 2.39115 3.12978 3.13883 3.65537 3.91162 4.05260 4.07899 4.09545 4.09980 4.17271 4.31094 4.39731 4.53794 4.64165 4.66161 4.71799 4.80909 4.82266 4.93333 4.95976 5.02369 5.03362 5.09948 5.23902 5.30447 5.34966 5.37597 5.41170 5.49903 5.57213 5.69607 5.76954 6.38123 6.42805 6.60258 6.84499 7.27587 7.40173 8.93267 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.033805 B = 0.001968 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.088323 B =14222.681196 C =14843.804161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.060 4.060 3 C -0.124 4.124 4 C -0.003 4.003 5 C -0.502 4.502 6 H 0.051 0.949 7 C 0.003 3.997 8 N -0.951 5.951 9 Si 0.936 3.064 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.251 1.251 13 C 0.138 3.862 14 N -0.713 5.713 15 C 0.511 3.489 16 O -0.584 6.584 17 C -0.122 4.122 18 C -0.152 4.152 19 C 0.430 3.570 20 O -0.485 6.485 21 C -0.342 4.342 22 C -0.047 4.047 23 C -0.169 4.169 24 C -0.216 4.216 25 S 0.249 5.751 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.262 0.738 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.413 0.587 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.152 0.848 43 H 0.167 0.833 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -2.188 34.516 34.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 C -0.182 4.182 4 C -0.041 4.041 5 C -0.540 4.540 6 H 0.069 0.931 7 C -0.193 4.193 8 N -0.593 5.593 9 Si 0.761 3.239 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.175 1.175 13 C 0.014 3.986 14 N -0.366 5.366 15 C 0.298 3.702 16 O -0.464 6.464 17 C -0.162 4.162 18 C -0.189 4.189 19 C 0.312 3.688 20 O -0.365 6.365 21 C -0.460 4.460 22 C -0.082 4.082 23 C -0.199 4.199 24 C -0.354 4.354 25 S 0.518 5.482 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.169 0.831 43 H 0.184 0.816 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.444 -3.478 33.440 33.709 hybrid contribution -0.552 0.764 -0.067 0.945 sum 1.892 -2.713 33.373 33.537 Atomic orbital electron populations 1.21712 0.93979 1.01259 1.01238 1.20565 0.96450 0.96121 0.92859 1.21710 1.00259 0.94963 1.01239 1.19564 0.95948 0.95483 0.93116 1.21376 1.30235 1.12280 0.90146 0.93068 1.25862 0.97512 0.99994 0.95905 1.70046 1.48115 1.42686 0.98421 0.85874 0.79839 0.80307 0.77919 1.19695 1.21500 1.17487 1.21266 0.98282 0.95581 0.83448 1.46037 1.53226 1.32237 1.05061 1.21060 0.79560 0.84142 0.85393 1.90678 1.39982 1.28278 1.87486 1.21401 1.03936 1.00992 0.89861 1.21800 1.03973 1.01422 0.91746 1.20198 0.76728 0.82822 0.89075 1.90588 1.31882 1.24536 1.89490 1.24214 1.15183 1.07418 0.99184 1.21266 0.96820 0.99505 0.90586 1.20301 1.01415 0.96926 1.01259 1.26016 1.04109 1.03036 1.02202 1.83319 1.44173 1.22073 0.98656 0.91276 0.93709 0.93610 0.93647 0.93702 0.91269 0.96684 0.96827 0.92882 0.92641 0.92578 0.74970 0.87000 0.87009 0.87236 0.87239 0.83070 0.81582 0.78509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 2 C -0.06 -2.09 0.54 -52.19 -0.03 -2.12 16 3 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 4 C 0.00 -0.14 3.11 29.84 0.09 -0.05 16 5 C -0.50 -27.33 8.20 25.60 0.21 -27.12 16 6 H 0.05 3.01 5.92 -2.91 -0.02 2.99 16 7 C 0.00 0.20 5.47 84.65 0.46 0.66 16 8 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 9 Si 0.94 44.45 27.47 68.60 1.88 46.34 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 13 C 0.14 4.32 4.56 86.38 0.39 4.71 16 14 N -0.71 -17.54 4.96 -463.06 -2.30 -19.84 16 15 C 0.51 12.74 7.83 87.66 0.69 13.43 16 16 O -0.58 -18.83 15.98 -3.04 -0.05 -18.88 16 17 C -0.12 -2.23 4.99 29.85 0.15 -2.08 16 18 C -0.15 -2.66 4.28 29.85 0.13 -2.53 16 19 C 0.43 8.13 6.93 26.42 0.18 8.32 16 20 O -0.48 -11.58 16.36 -3.57 -0.06 -11.64 16 21 C -0.34 -5.47 6.23 22.76 0.14 -5.33 16 22 C -0.05 -0.66 9.95 21.78 0.22 -0.45 16 23 C -0.17 -1.60 10.14 21.06 0.21 -1.39 16 24 C -0.22 -1.71 10.93 66.86 0.73 -0.98 16 25 S 0.25 2.76 22.42 -56.49 -1.27 1.50 16 26 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 27 H 0.04 1.74 6.62 -2.39 -0.02 1.73 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.04 1.75 6.62 -2.39 -0.02 1.73 16 31 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 32 H 0.01 0.68 7.20 -2.38 -0.02 0.66 16 33 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 34 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.41 8.19 6.16 -92.71 -0.57 7.62 16 38 H 0.11 1.81 8.10 -2.39 -0.02 1.79 16 39 H 0.11 1.81 8.10 -2.39 -0.02 1.79 16 40 H 0.11 1.87 8.10 -2.39 -0.02 1.85 16 41 H 0.11 1.87 8.10 -2.39 -0.02 1.85 16 42 H 0.15 2.06 8.02 -2.91 -0.02 2.03 16 43 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 44 H 0.20 0.40 8.06 -2.91 -0.02 0.38 16 Total: -1.00 -71.61 372.38 3.63 -67.98 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.38 Total: 15.12 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 4.74 Total: -22.06 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -2.00 Total: -78.36 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.11 Total: -30.51 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.34 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.27 Total: 1.50 kcal Total: -71.61 3.63 -67.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345980941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.290 kcal (2) G-P(sol) polarization free energy of solvation -71.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds