Wall clock time and date at job start Tue Mar 31 2020 14:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35976 * 116.99774 * 2 1 4 4 C 1.38723 * 119.98015 * 180.02562 * 3 2 1 5 5 C 1.38091 * 120.01111 * 180.02562 * 4 3 2 6 6 C 1.38847 * 119.98216 * 359.97438 * 5 4 3 7 7 N 1.40116 * 120.01291 * 180.02562 * 6 5 4 8 8 C 1.46501 * 120.00018 * 56.44410 * 7 6 5 9 9 C 1.53000 * 109.47299 * 90.00029 * 8 7 6 10 10 C 1.52998 * 109.47418 * 175.00041 * 9 8 7 11 11 C 1.52996 * 109.46983 * 295.00139 * 9 8 7 12 12 C 1.34772 * 120.00356 * 236.44778 * 7 6 5 13 13 O 1.21302 * 119.99822 * 5.43423 * 12 7 6 14 14 C 1.50695 * 120.00287 * 185.43945 * 12 7 6 15 15 S 1.81004 * 109.47214 * 179.97438 * 14 12 7 16 16 C 1.76198 * 99.99893 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00074 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99557 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00301 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99715 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47102 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47328 * 120.00439 * 20 18 16 23 23 H 1.48501 * 109.47119 * 240.00670 * 20 18 16 24 24 C 1.38845 * 119.97617 * 0.26984 * 6 5 4 25 25 C 1.38092 * 119.97920 * 359.47550 * 24 6 5 26 26 H 1.08999 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46804 * 299.99429 * 1 2 3 28 28 H 1.08994 * 109.47612 * 59.99163 * 1 2 3 29 29 H 1.07995 * 119.99542 * 0.02604 * 4 3 2 30 30 H 1.07999 * 120.00737 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47552 * 210.00643 * 8 7 6 32 32 H 1.09005 * 109.47265 * 330.00348 * 8 7 6 33 33 H 1.08997 * 109.47302 * 54.99917 * 9 8 7 34 34 H 1.09005 * 109.46819 * 59.99961 * 10 9 8 35 35 H 1.08992 * 109.47310 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47183 * 300.00317 * 10 9 8 37 37 H 1.09009 * 109.47370 * 60.00054 * 11 9 8 38 38 H 1.09002 * 109.47175 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47582 * 299.99704 * 11 9 8 40 40 H 1.08996 * 109.47216 * 299.99426 * 14 12 7 41 41 H 1.09003 * 109.47175 * 59.99695 * 14 12 7 42 42 H 0.96999 * 120.00088 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.01183 * 179.72375 * 24 6 5 44 44 H 1.08005 * 119.99187 * 180.23004 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4316 1.2838 -0.0005 5 6 4.0592 2.5138 0.0000 6 6 3.3032 3.6785 0.0005 7 7 3.9392 4.9269 0.0005 8 6 4.8962 5.2615 -1.0571 9 6 4.1580 5.9238 -2.2221 10 6 5.1711 6.3855 -3.2715 11 6 3.1933 4.9175 -2.8526 12 6 3.6708 5.8200 0.9735 13 8 2.9554 5.5085 1.9022 14 6 4.2592 7.2058 0.9076 15 16 3.7170 8.1606 2.3465 16 6 4.5284 9.6906 2.0219 17 1 5.1372 9.8018 1.1369 18 6 4.3843 10.7532 2.9032 19 7 3.6418 10.6178 3.9817 20 14 5.2440 12.3755 2.5587 21 1 6.0112 12.2698 1.2917 22 1 4.2324 13.4555 2.4357 23 1 6.1716 12.6908 3.6747 24 6 1.9166 3.6055 0.0062 25 6 1.2904 2.3747 0.0003 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 4.0195 0.3778 -0.0014 30 1 5.1377 2.5700 0.0000 31 1 5.6462 5.9482 -0.6646 32 1 5.3843 4.3516 -1.4066 33 1 3.5975 6.7836 -1.8553 34 1 5.7316 5.5255 -3.6383 35 1 4.6452 6.8569 -4.1016 36 1 5.8584 7.1023 -2.8223 37 1 2.4714 4.5886 -2.1049 38 1 2.6670 5.3895 -3.6823 39 1 3.7537 4.0576 -3.2195 40 1 5.3471 7.1388 0.9047 41 1 3.9232 7.7003 -0.0038 42 1 3.5414 11.3603 4.5977 43 1 1.3281 4.5110 0.0111 44 1 0.2119 2.3178 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347231048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:03 Heat of formation + Delta-G solvation = -50.207330 kcal Electronic energy + Delta-G solvation = -25087.572424 eV Core-core repulsion = 21517.627797 eV Total energy + Delta-G solvation = -3569.944627 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73015 -39.56662 -37.32931 -36.53260 -33.67190 -32.44396 -31.26735 -30.38920 -28.50820 -27.42673 -27.12442 -25.94702 -25.48069 -23.00642 -22.13645 -20.63346 -19.38026 -18.30428 -17.69328 -17.22992 -16.51534 -16.21727 -15.85809 -15.12952 -14.86098 -14.82031 -14.70783 -14.19556 -13.97083 -13.83888 -13.51185 -13.40964 -13.09344 -12.80528 -12.64807 -12.50700 -12.34590 -12.25207 -11.97407 -11.87337 -11.43527 -11.36841 -11.08898 -11.03890 -10.98454 -10.87771 -10.76775 -10.73616 -9.83088 -9.48140 -9.15023 -9.08719 -9.05189 -8.24618 -7.79956 -6.52335 -6.23337 -3.94139 1.24088 1.31386 2.83759 2.97034 3.12966 3.20377 3.24586 3.29794 3.54996 3.67690 4.18317 4.67436 4.69653 4.75030 4.78588 4.85716 4.93563 4.96128 5.04647 5.12090 5.18521 5.25169 5.26711 5.31561 5.43569 5.48981 5.54389 5.59890 5.64278 5.75779 5.78115 5.85191 5.88140 5.93318 6.00806 6.08616 6.21547 6.25173 6.26169 6.41521 6.47511 6.93672 7.27681 7.44549 7.58445 8.33828 8.49906 9.22151 10.84109 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.003157 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.016212 B = 8866.038963 C = 9985.948415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.114 3.886 4 C -0.138 4.138 5 C -0.094 4.094 6 C 0.128 3.872 7 N -0.573 5.573 8 C 0.115 3.885 9 C -0.118 4.118 10 C -0.144 4.144 11 C -0.148 4.148 12 C 0.534 3.466 13 O -0.500 6.500 14 C -0.149 4.149 15 S -0.061 6.061 16 C -0.533 4.533 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.070 4.070 25 C -0.192 4.192 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.268 0.732 43 H 0.127 0.873 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -17.773 -14.922 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.069 3.931 4 C -0.157 4.157 5 C -0.114 4.114 6 C 0.037 3.963 7 N -0.303 5.303 8 C -0.008 4.008 9 C -0.137 4.137 10 C -0.202 4.202 11 C -0.206 4.206 12 C 0.323 3.677 13 O -0.373 6.373 14 C -0.299 4.299 15 S 0.166 5.834 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.090 4.090 25 C -0.211 4.211 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.051 -18.293 -13.352 22.740 hybrid contribution 1.108 1.640 -1.284 2.360 sum -0.944 -16.653 -14.636 22.190 Atomic orbital electron populations 1.23040 0.78519 1.03739 1.01492 1.86057 1.21289 1.26979 1.89037 1.18973 0.92295 0.84038 0.97835 1.20188 0.91275 0.98008 1.06250 1.20899 0.99890 0.90612 0.99971 1.17488 0.91088 0.84919 1.02805 1.45630 1.44391 1.13408 1.26917 1.21811 0.90903 1.00937 0.87130 1.21593 0.97417 0.99196 0.95518 1.21770 0.98831 1.01150 0.98480 1.21901 0.99399 0.98608 1.00644 1.20490 0.80579 0.85953 0.80722 1.90733 1.36213 1.78361 1.31950 1.23591 1.03810 0.94921 1.07592 1.85430 1.65582 1.08472 1.23955 1.22882 1.35320 0.97944 1.12029 0.90858 1.24994 0.95262 0.98861 0.94466 1.70027 1.36768 1.32189 1.11253 0.86121 0.79118 0.81892 0.78395 1.19599 1.20574 1.20556 1.20958 0.93474 0.97598 0.96976 1.21082 1.00027 0.91749 1.08231 0.88398 0.92534 0.92708 0.85030 0.85166 0.89493 0.90198 0.90368 0.92662 0.92371 0.92228 0.92034 0.92902 0.92918 0.89134 0.88973 0.92229 0.85502 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.52 10.50 -19.67 -0.21 -3.73 16 3 C 0.11 1.37 6.69 -39.22 -0.26 1.11 16 4 C -0.14 -1.59 9.98 -39.46 -0.39 -1.99 16 5 C -0.09 -1.13 9.31 -39.41 -0.37 -1.50 16 6 C 0.13 1.80 3.83 -83.62 -0.32 1.48 16 7 N -0.57 -8.39 2.44 -113.41 -0.28 -8.66 16 8 C 0.11 1.29 4.58 -4.04 -0.02 1.27 16 9 C -0.12 -1.25 3.12 -90.62 -0.28 -1.53 16 10 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 11 C -0.15 -1.51 8.75 37.16 0.33 -1.18 16 12 C 0.53 10.19 7.46 -10.99 -0.08 10.11 16 13 O -0.50 -11.51 15.21 5.54 0.08 -11.43 16 14 C -0.15 -2.99 4.84 36.00 0.17 -2.81 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.53 -15.01 9.50 30.94 0.29 -14.72 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 20 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.07 -0.99 7.38 -39.41 -0.29 -1.28 16 25 C -0.19 -2.33 9.03 -39.46 -0.36 -2.69 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.13 1.33 7.80 -52.49 -0.41 0.92 16 31 H 0.09 0.96 6.48 -51.93 -0.34 0.63 16 32 H 0.08 0.74 7.33 -51.93 -0.38 0.36 16 33 H 0.08 0.97 6.98 -51.93 -0.36 0.61 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.71 5.16 -51.92 -0.27 0.44 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.68 7.24 -51.92 -0.38 1.30 16 41 H 0.09 1.72 6.97 -51.91 -0.36 1.35 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.13 1.90 8.03 -52.49 -0.42 1.48 16 44 H 0.13 1.29 6.29 -52.48 -0.33 0.96 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -34.16 372.41 -8.18 -42.33 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.55 Total: 0.26 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.34 Total: -11.48 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.46 Total: -33.94 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.12 Total: -15.16 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.16 -8.18 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347231048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.874 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds