Wall clock time and date at job start Tue Mar 31 2020 14:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35976 * 116.99774 * 2 1 4 4 C 1.38723 * 119.98015 * 180.02562 * 3 2 1 5 5 C 1.38091 * 120.01111 * 180.02562 * 4 3 2 6 6 C 1.38847 * 119.98216 * 359.97438 * 5 4 3 7 7 N 1.40116 * 120.01291 * 180.02562 * 6 5 4 8 8 C 1.46501 * 120.00018 * 56.44410 * 7 6 5 9 9 C 1.53000 * 109.47299 * 90.00029 * 8 7 6 10 10 C 1.52998 * 109.47418 * 175.00041 * 9 8 7 11 11 C 1.52996 * 109.46983 * 295.00139 * 9 8 7 12 12 C 1.34772 * 120.00356 * 236.44778 * 7 6 5 13 13 O 1.21302 * 119.99822 * 5.43423 * 12 7 6 14 14 C 1.50695 * 120.00287 * 185.43945 * 12 7 6 15 15 S 1.81004 * 109.47214 * 179.97438 * 14 12 7 16 16 C 1.76198 * 99.99893 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00074 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99557 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00301 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99715 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47102 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47328 * 120.00439 * 20 18 16 23 23 H 1.48501 * 109.47119 * 240.00670 * 20 18 16 24 24 C 1.38845 * 119.97617 * 0.26984 * 6 5 4 25 25 C 1.38092 * 119.97920 * 359.47550 * 24 6 5 26 26 H 1.08999 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46804 * 299.99429 * 1 2 3 28 28 H 1.08994 * 109.47612 * 59.99163 * 1 2 3 29 29 H 1.07995 * 119.99542 * 0.02604 * 4 3 2 30 30 H 1.07999 * 120.00737 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47552 * 210.00643 * 8 7 6 32 32 H 1.09005 * 109.47265 * 330.00348 * 8 7 6 33 33 H 1.08997 * 109.47302 * 54.99917 * 9 8 7 34 34 H 1.09005 * 109.46819 * 59.99961 * 10 9 8 35 35 H 1.08992 * 109.47310 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.47183 * 300.00317 * 10 9 8 37 37 H 1.09009 * 109.47370 * 60.00054 * 11 9 8 38 38 H 1.09002 * 109.47175 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47582 * 299.99704 * 11 9 8 40 40 H 1.08996 * 109.47216 * 299.99426 * 14 12 7 41 41 H 1.09003 * 109.47175 * 59.99695 * 14 12 7 42 42 H 0.96999 * 120.00088 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.01183 * 179.72375 * 24 6 5 44 44 H 1.08005 * 119.99187 * 180.23004 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4316 1.2838 -0.0005 5 6 4.0592 2.5138 0.0000 6 6 3.3032 3.6785 0.0005 7 7 3.9392 4.9269 0.0005 8 6 4.8962 5.2615 -1.0571 9 6 4.1580 5.9238 -2.2221 10 6 5.1711 6.3855 -3.2715 11 6 3.1933 4.9175 -2.8526 12 6 3.6708 5.8200 0.9735 13 8 2.9554 5.5085 1.9022 14 6 4.2592 7.2058 0.9076 15 16 3.7170 8.1606 2.3465 16 6 4.5284 9.6906 2.0219 17 1 5.1372 9.8018 1.1369 18 6 4.3843 10.7532 2.9032 19 7 3.6418 10.6178 3.9817 20 14 5.2440 12.3755 2.5587 21 1 6.0112 12.2698 1.2917 22 1 4.2324 13.4555 2.4357 23 1 6.1716 12.6908 3.6747 24 6 1.9166 3.6055 0.0062 25 6 1.2904 2.3747 0.0003 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 4.0195 0.3778 -0.0014 30 1 5.1377 2.5700 0.0000 31 1 5.6462 5.9482 -0.6646 32 1 5.3843 4.3516 -1.4066 33 1 3.5975 6.7836 -1.8553 34 1 5.7316 5.5255 -3.6383 35 1 4.6452 6.8569 -4.1016 36 1 5.8584 7.1023 -2.8223 37 1 2.4714 4.5886 -2.1049 38 1 2.6670 5.3895 -3.6823 39 1 3.7537 4.0576 -3.2195 40 1 5.3471 7.1388 0.9047 41 1 3.9232 7.7003 -0.0038 42 1 3.5414 11.3603 4.5977 43 1 1.3281 4.5110 0.0111 44 1 0.2119 2.3178 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347231048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:03 Heat of formation + Delta-G solvation = -70.271345 kcal Electronic energy + Delta-G solvation = -25088.442465 eV Core-core repulsion = 21517.627797 eV Total energy + Delta-G solvation = -3570.814668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85658 -40.59367 -38.51069 -37.49182 -34.73960 -34.58301 -32.22621 -31.71199 -29.64611 -28.25283 -27.87178 -27.67015 -26.88777 -24.03124 -23.15567 -21.58915 -20.63652 -19.59746 -19.18714 -18.45407 -17.69046 -17.36416 -16.88631 -16.61904 -16.29299 -16.15152 -15.77599 -15.61072 -15.05714 -14.85061 -14.72794 -14.57166 -14.37329 -13.94685 -13.73619 -13.60000 -13.46602 -13.16461 -13.04851 -12.92645 -12.84239 -12.70985 -12.60881 -12.33727 -12.19816 -11.86254 -11.76457 -11.66007 -11.60897 -11.15965 -10.99858 -10.30539 -10.22988 -10.01726 -8.83446 -8.67642 -8.35137 -6.13537 0.26662 0.31668 1.23002 1.41214 1.44204 1.50318 1.56378 2.00302 2.26160 2.37773 2.68610 2.99302 3.23880 3.66976 3.79382 3.85364 3.87303 3.94070 4.11467 4.21024 4.24802 4.34960 4.39426 4.39728 4.42520 4.48474 4.57429 4.65092 4.72781 4.79335 4.84962 4.87194 4.99109 5.02825 5.07497 5.26463 5.28994 5.37366 5.41253 5.42060 5.46124 5.52186 5.87606 6.17129 6.20226 6.40520 7.06268 7.08536 8.74328 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.003157 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.016212 B = 8866.038963 C = 9985.948415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.138 4.138 5 C -0.089 4.089 6 C 0.105 3.895 7 N -0.556 5.556 8 C 0.106 3.894 9 C -0.115 4.115 10 C -0.139 4.139 11 C -0.145 4.145 12 C 0.534 3.466 13 O -0.550 6.550 14 C -0.120 4.120 15 S -0.150 6.150 16 C -0.542 4.542 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.274 1.274 24 C -0.086 4.086 25 C -0.195 4.195 26 H 0.123 0.877 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.105 0.895 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.665 -18.848 -17.222 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.067 3.933 4 C -0.157 4.157 5 C -0.108 4.108 6 C 0.014 3.986 7 N -0.285 5.285 8 C -0.014 4.014 9 C -0.134 4.134 10 C -0.197 4.197 11 C -0.202 4.202 12 C 0.323 3.677 13 O -0.427 6.427 14 C -0.271 4.271 15 S 0.077 5.923 16 C -0.690 4.690 17 H 0.102 0.898 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.199 1.199 24 C -0.106 4.106 25 C -0.214 4.214 26 H 0.141 0.859 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.173 0.827 30 H 0.171 0.829 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.360 -19.403 -15.708 24.967 hybrid contribution 0.508 1.774 -0.659 1.959 sum 0.147 -17.629 -16.366 24.056 Atomic orbital electron populations 1.23332 0.76695 1.05631 1.02014 1.86055 1.23211 1.26284 1.88717 1.19148 0.92785 0.84305 0.97012 1.20505 0.91386 0.98649 1.05184 1.21097 1.00888 0.89882 0.98964 1.17668 0.91264 0.85015 1.04659 1.45477 1.43956 1.12887 1.26132 1.22149 0.90331 1.02604 0.86362 1.21541 0.97750 0.98324 0.95829 1.21734 0.98321 1.01860 0.97801 1.21861 0.99108 0.98981 1.00226 1.20284 0.80146 0.86116 0.81175 1.90710 1.38585 1.79125 1.34273 1.23385 1.04761 0.94729 1.04265 1.85613 1.67065 1.10578 1.29032 1.23200 1.35259 0.98091 1.12438 0.89848 1.26127 0.95876 1.03121 0.94014 1.70191 1.38488 1.33594 1.12532 0.84909 0.77914 0.76293 0.78863 1.17893 1.20012 1.19936 1.20914 0.93790 0.97617 0.98303 1.21225 1.01022 0.91244 1.07927 0.85919 0.92512 0.91685 0.82706 0.82945 0.89095 0.87234 0.92833 0.90853 0.92067 0.92300 0.93821 0.92435 0.91497 0.87149 0.87510 0.92016 0.87643 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.59 10.50 -93.29 -0.98 -7.57 16 3 C 0.11 2.55 6.69 22.50 0.15 2.70 16 4 C -0.14 -2.88 9.98 22.35 0.22 -2.65 16 5 C -0.09 -1.97 9.31 22.38 0.21 -1.76 16 6 C 0.10 2.89 3.83 38.11 0.15 3.03 16 7 N -0.56 -16.00 2.44 -631.10 -1.54 -17.54 16 8 C 0.11 2.18 4.58 86.38 0.40 2.57 16 9 C -0.11 -2.26 3.12 -10.80 -0.03 -2.29 16 10 C -0.14 -2.09 9.19 71.98 0.66 -1.43 16 11 C -0.14 -2.73 8.75 71.98 0.63 -2.10 16 12 C 0.53 20.83 7.46 87.66 0.65 21.49 16 13 O -0.55 -26.52 15.21 -3.10 -0.05 -26.57 16 14 C -0.12 -4.89 4.84 71.23 0.34 -4.54 16 15 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 16 C -0.54 -30.84 9.50 67.96 0.65 -30.20 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.76 5.49 84.86 0.47 1.22 16 19 N -0.91 -56.05 13.22 21.65 0.29 -55.77 16 20 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 C -0.09 -2.49 7.38 22.38 0.17 -2.32 16 25 C -0.20 -4.68 9.03 22.35 0.20 -4.48 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.73 7.66 -2.38 -0.02 0.71 16 28 H 0.06 0.70 7.66 -2.39 -0.02 0.69 16 29 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.15 2.62 7.80 -2.91 -0.02 2.59 16 31 H 0.09 1.81 6.48 -2.39 -0.02 1.79 16 32 H 0.11 1.64 7.33 -2.38 -0.02 1.62 16 33 H 0.05 1.32 6.98 -2.39 -0.02 1.30 16 34 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.04 0.99 5.16 -2.38 -0.01 0.98 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 4.01 7.24 -2.40 -0.02 3.99 16 41 H 0.11 4.00 6.97 -2.39 -0.02 3.98 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.11 3.41 8.03 -2.91 -0.02 3.39 16 44 H 0.15 2.84 6.29 -2.91 -0.02 2.83 16 Total: -1.00 -77.01 372.41 5.54 -71.46 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.99 Total: 19.46 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 5.97 Total: -19.42 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -1.26 Total: -73.31 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.03 Total: -34.14 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -77.01 5.54 -71.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347231048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.193 kcal (2) G-P(sol) polarization free energy of solvation -77.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds