Wall clock time and date at job start Tue Mar 31 2020 14:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46808 * 2 1 4 4 O 1.42898 * 109.47180 * 239.99759 * 2 1 3 5 5 C 1.53004 * 109.47164 * 119.99441 * 2 1 3 6 6 C 1.52999 * 109.46926 * 60.00035 * 5 2 1 7 7 C 1.52996 * 109.47465 * 300.00223 * 5 2 1 8 8 N 1.46492 * 109.47018 * 180.02562 * 5 2 1 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 5 2 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 5 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 5 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47076 * 59.99906 * 21 19 17 23 23 H 1.48496 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46962 * 299.99839 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09004 * 109.46862 * 300.00026 * 1 2 3 27 27 H 1.08997 * 109.47519 * 59.99982 * 1 2 3 28 28 H 1.08998 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46676 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46830 * 299.99548 * 3 2 1 31 31 H 1.08994 * 109.47261 * 59.99792 * 3 2 1 32 32 H 0.96699 * 113.99662 * 300.00066 * 4 2 1 33 33 H 1.08997 * 109.47220 * 179.97438 * 6 5 2 34 34 H 1.09003 * 109.47505 * 300.00325 * 6 5 2 35 35 H 1.09002 * 109.47114 * 60.00073 * 6 5 2 36 36 H 1.09003 * 109.47417 * 300.00402 * 7 5 2 37 37 H 1.09010 * 109.47265 * 59.99788 * 7 5 2 38 38 H 1.08998 * 109.47545 * 179.97438 * 7 5 2 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 5 2 40 40 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 43 43 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2493 6 6 1.5300 -2.1636 1.2494 7 6 1.5300 0.0001 2.4985 8 7 3.5050 -0.7206 1.2496 9 6 4.1789 -1.3045 2.2603 10 8 3.5712 -1.8311 3.1718 11 6 5.6576 -1.3044 2.2603 12 6 6.3580 -0.7004 1.2138 13 6 7.7385 -0.7015 1.2148 14 6 8.4331 -1.2932 2.2524 15 6 7.7453 -1.9030 3.2975 16 16 8.6360 -2.6630 4.6142 17 6 8.6738 -4.3274 4.0373 18 1 8.2826 -4.5694 3.0602 19 6 9.2061 -5.3273 4.8384 20 7 9.6834 -5.0324 6.0290 21 14 9.2468 -7.0918 4.2265 22 1 10.0502 -7.1650 2.9798 23 1 9.8597 -7.9610 5.2628 24 1 7.8621 -7.5521 3.9508 25 6 6.3566 -1.9072 3.3047 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.7210 -1.5952 -1.2328 33 1 1.8937 -2.6775 2.1392 34 1 0.4400 -2.1637 1.2494 35 1 1.8934 -2.6775 0.3595 36 1 1.8933 1.0278 2.4985 37 1 0.4399 0.0001 2.4986 38 1 1.8930 -0.5139 3.3886 39 1 3.9900 -0.3007 0.5221 40 1 5.8194 -0.2321 0.4032 41 1 8.2774 -0.2341 0.4040 42 1 9.5131 -1.2867 2.2501 43 1 10.0553 -5.7315 6.5892 44 1 5.8202 -2.3760 4.1164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347721311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:11 Heat of formation + Delta-G solvation = -69.072950 kcal Electronic energy + Delta-G solvation = -25245.544825 eV Core-core repulsion = 21674.782124 eV Total energy + Delta-G solvation = -3570.762702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80909 -39.02048 -37.62536 -35.03164 -32.94577 -32.50039 -31.31647 -30.53322 -29.98829 -27.99873 -26.92718 -25.56106 -24.23941 -22.92674 -22.15704 -20.33966 -19.36436 -18.65177 -17.68146 -16.95786 -15.96448 -15.52343 -15.25750 -15.18575 -14.88556 -14.84382 -14.73348 -14.26833 -13.84117 -13.56519 -13.41527 -13.27239 -12.96495 -12.73044 -12.56470 -12.38916 -12.31247 -12.19274 -12.01196 -11.61995 -11.60281 -11.30193 -11.14010 -11.10145 -11.06268 -10.88547 -10.70268 -10.38940 -9.94160 -9.47823 -9.14314 -9.12543 -8.99267 -8.56169 -8.01491 -6.70383 -6.27710 -4.01625 1.19137 1.68869 3.04971 3.06957 3.22411 3.24192 3.27177 3.47947 3.87766 4.10589 4.17218 4.27527 4.44158 4.57484 4.79287 4.89678 4.95113 5.08460 5.12713 5.21558 5.26467 5.36689 5.39137 5.44254 5.48524 5.49279 5.54468 5.62115 5.65949 5.72649 5.77053 5.85132 5.89372 6.00520 6.18098 6.24036 6.28719 6.51048 6.61706 6.66444 6.95146 7.21476 7.26382 7.57910 7.58593 8.33252 8.35235 9.17953 10.78982 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019255 B = 0.002992 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.813650 B = 9356.055772 C = 9864.393449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.143 4.143 4 O -0.557 6.557 5 C 0.153 3.847 6 C -0.174 4.174 7 C -0.169 4.169 8 N -0.719 5.719 9 C 0.566 3.434 10 O -0.532 6.532 11 C -0.155 4.155 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.056 4.056 15 C -0.107 4.107 16 S -0.035 6.035 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.871 5.871 21 Si 0.920 3.080 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.019 4.019 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.377 0.623 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.401 0.599 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.270 0.730 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.136 12.019 -13.624 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.085 3.915 3 C -0.200 4.200 4 O -0.364 6.364 5 C 0.066 3.934 6 C -0.231 4.231 7 C -0.227 4.227 8 N -0.372 5.372 9 C 0.355 3.645 10 O -0.410 6.410 11 C -0.160 4.160 12 C -0.109 4.109 13 C -0.161 4.161 14 C -0.077 4.077 15 C -0.218 4.218 16 S 0.199 5.801 17 C -0.667 4.667 18 H 0.093 0.907 19 C -0.135 4.135 20 N -0.506 5.506 21 Si 0.746 3.254 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.198 1.198 25 C -0.041 4.041 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.226 0.774 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.238 0.762 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.751 12.574 -11.892 23.402 hybrid contribution -0.525 -1.954 -1.807 2.712 sum -16.277 10.620 -13.699 23.778 Atomic orbital electron populations 1.22576 0.94808 1.03105 1.03243 1.21406 0.93321 0.92931 0.83841 1.21837 1.02037 0.93264 1.02843 1.86535 1.77332 1.29240 1.43306 1.20875 0.80394 0.96261 0.95839 1.22341 1.00985 0.95683 1.04132 1.22358 1.00988 1.00571 0.98751 1.45958 1.06044 1.59605 1.25625 1.18372 0.87320 0.77347 0.81450 1.90699 1.69596 1.44760 1.35934 1.19892 0.92069 1.05608 0.98396 1.21151 0.94653 0.98259 0.96810 1.21057 0.93850 1.01871 0.99305 1.21953 1.00434 0.93615 0.91691 1.22842 0.96058 1.01290 1.01581 1.83590 1.67747 1.06160 1.22568 1.22794 1.47196 0.91570 1.05174 0.90696 1.24997 0.94572 0.99473 0.94492 1.69976 1.37739 1.34077 1.08793 0.86184 0.78719 0.81948 0.78516 1.19810 1.20732 1.19802 1.21935 0.93403 0.92742 0.95986 0.90875 0.91442 0.91652 0.91837 0.91577 0.90499 0.77415 0.89418 0.91575 0.92634 0.92190 0.91663 0.89723 0.76243 0.86582 0.85899 0.85116 0.92005 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 8.11 37.16 0.30 -0.81 16 2 C 0.13 0.99 0.58 -90.62 -0.05 0.94 16 3 C -0.14 -1.06 8.32 37.16 0.31 -0.75 16 4 O -0.56 -4.76 12.68 -35.23 -0.45 -5.21 16 5 C 0.15 1.51 0.31 -131.82 -0.04 1.47 16 6 C -0.17 -1.78 7.74 37.16 0.29 -1.49 16 7 C -0.17 -1.72 7.69 37.16 0.29 -1.43 16 8 N -0.72 -8.42 4.65 -48.54 -0.23 -8.65 16 9 C 0.57 8.94 7.19 -12.32 -0.09 8.85 16 10 O -0.53 -9.89 12.55 5.32 0.07 -9.82 16 11 C -0.15 -2.62 5.87 -105.00 -0.62 -3.24 16 12 C -0.09 -1.27 9.54 -39.12 -0.37 -1.64 16 13 C -0.14 -2.07 10.02 -39.67 -0.40 -2.47 16 14 C -0.06 -1.01 9.79 -39.25 -0.38 -1.40 16 15 C -0.11 -2.31 5.45 -39.00 -0.21 -2.52 16 16 S -0.04 -0.91 21.40 -107.50 -2.30 -3.21 16 17 C -0.52 -14.77 9.46 30.92 0.29 -14.47 16 18 H 0.07 2.11 7.79 -52.49 -0.41 1.70 16 19 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 20 N -0.87 -25.58 13.22 55.49 0.73 -24.84 16 21 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 26 H 0.07 0.41 6.43 -51.93 -0.33 0.08 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 29 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.51 6.43 -51.93 -0.33 0.17 16 32 H 0.38 2.43 7.33 45.56 0.33 2.76 16 33 H 0.09 1.20 6.16 -51.93 -0.32 0.88 16 34 H 0.07 0.54 6.43 -51.93 -0.33 0.20 16 35 H 0.05 0.52 6.78 -51.93 -0.35 0.17 16 36 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 37 H 0.06 0.53 6.43 -51.92 -0.33 0.19 16 38 H 0.08 1.13 6.16 -51.93 -0.32 0.81 16 39 H 0.40 4.13 5.22 -40.82 -0.21 3.91 16 40 H 0.12 1.23 6.40 -52.49 -0.34 0.89 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 44 H 0.14 3.05 7.65 -52.49 -0.40 2.65 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -32.47 359.93 -8.12 -40.59 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.20 Total: 6.91 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -1.15 Total: -17.73 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.51 Total: -33.49 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.38 Total: -15.03 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.47 -8.12 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347721311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.480 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds