Wall clock time and date at job start Tue Mar 31 2020 14:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46808 * 2 1 4 4 O 1.42898 * 109.47180 * 239.99759 * 2 1 3 5 5 C 1.53004 * 109.47164 * 119.99441 * 2 1 3 6 6 C 1.52999 * 109.46926 * 60.00035 * 5 2 1 7 7 C 1.52996 * 109.47465 * 300.00223 * 5 2 1 8 8 N 1.46492 * 109.47018 * 180.02562 * 5 2 1 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 5 2 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 5 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 5 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47076 * 59.99906 * 21 19 17 23 23 H 1.48496 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46962 * 299.99839 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.09004 * 109.46862 * 300.00026 * 1 2 3 27 27 H 1.08997 * 109.47519 * 59.99982 * 1 2 3 28 28 H 1.08998 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46676 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46830 * 299.99548 * 3 2 1 31 31 H 1.08994 * 109.47261 * 59.99792 * 3 2 1 32 32 H 0.96699 * 113.99662 * 300.00066 * 4 2 1 33 33 H 1.08997 * 109.47220 * 179.97438 * 6 5 2 34 34 H 1.09003 * 109.47505 * 300.00325 * 6 5 2 35 35 H 1.09002 * 109.47114 * 60.00073 * 6 5 2 36 36 H 1.09003 * 109.47417 * 300.00402 * 7 5 2 37 37 H 1.09010 * 109.47265 * 59.99788 * 7 5 2 38 38 H 1.08998 * 109.47545 * 179.97438 * 7 5 2 39 39 H 0.96996 * 120.00373 * 359.97438 * 8 5 2 40 40 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 41 41 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 42 42 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 43 43 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7211 1.2493 6 6 1.5300 -2.1636 1.2494 7 6 1.5300 0.0001 2.4985 8 7 3.5050 -0.7206 1.2496 9 6 4.1789 -1.3045 2.2603 10 8 3.5712 -1.8311 3.1718 11 6 5.6576 -1.3044 2.2603 12 6 6.3580 -0.7004 1.2138 13 6 7.7385 -0.7015 1.2148 14 6 8.4331 -1.2932 2.2524 15 6 7.7453 -1.9030 3.2975 16 16 8.6360 -2.6630 4.6142 17 6 8.6738 -4.3274 4.0373 18 1 8.2826 -4.5694 3.0602 19 6 9.2061 -5.3273 4.8384 20 7 9.6834 -5.0324 6.0290 21 14 9.2468 -7.0918 4.2265 22 1 10.0502 -7.1650 2.9798 23 1 9.8597 -7.9610 5.2628 24 1 7.8621 -7.5521 3.9508 25 6 6.3566 -1.9072 3.3047 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.7210 -1.5952 -1.2328 33 1 1.8937 -2.6775 2.1392 34 1 0.4400 -2.1637 1.2494 35 1 1.8934 -2.6775 0.3595 36 1 1.8933 1.0278 2.4985 37 1 0.4399 0.0001 2.4986 38 1 1.8930 -0.5139 3.3886 39 1 3.9900 -0.3007 0.5221 40 1 5.8194 -0.2321 0.4032 41 1 8.2774 -0.2341 0.4040 42 1 9.5131 -1.2867 2.2501 43 1 10.0553 -5.7315 6.5892 44 1 5.8202 -2.3760 4.1164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347721311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:11 Heat of formation + Delta-G solvation = -91.651360 kcal Electronic energy + Delta-G solvation = -25246.523899 eV Core-core repulsion = 21674.782124 eV Total energy + Delta-G solvation = -3571.741775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80946 -40.10180 -38.84376 -35.90419 -34.66526 -33.92783 -32.28256 -31.90375 -31.03056 -28.66087 -27.75506 -27.63170 -25.35636 -24.00681 -23.43589 -21.48126 -20.23438 -20.05582 -19.30621 -18.01026 -17.22580 -16.94314 -16.68752 -16.35587 -16.07244 -15.85209 -15.73599 -15.53311 -15.18228 -14.78800 -14.63007 -14.36846 -13.97604 -13.84749 -13.44120 -13.29762 -13.23161 -13.11228 -13.07323 -12.97094 -12.85589 -12.67485 -12.58552 -12.39378 -12.25692 -12.08247 -11.76186 -11.49848 -11.28616 -11.21667 -10.82296 -10.49877 -10.22064 -9.90147 -9.70573 -8.81659 -8.40146 -6.20359 -0.17638 0.24832 1.28383 1.37820 1.43919 1.63903 1.82309 2.06022 2.23906 2.80594 2.92784 3.30791 3.40721 3.43529 3.70266 3.78276 3.93197 3.97188 4.03002 4.10429 4.27824 4.35362 4.46064 4.60419 4.67646 4.68763 4.76883 4.80803 4.83086 4.91308 4.92673 4.95107 5.00928 5.10759 5.21841 5.24723 5.31763 5.37028 5.42393 5.47172 5.49654 5.54523 5.85578 6.14405 6.52787 6.75151 6.99916 7.19929 8.66784 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019255 B = 0.002992 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.813650 B = 9356.055772 C = 9864.393449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.134 3.866 3 C -0.147 4.147 4 O -0.566 6.566 5 C 0.149 3.851 6 C -0.172 4.172 7 C -0.167 4.167 8 N -0.698 5.698 9 C 0.564 3.436 10 O -0.568 6.568 11 C -0.157 4.157 12 C -0.066 4.066 13 C -0.121 4.121 14 C -0.064 4.064 15 C -0.128 4.128 16 S -0.095 6.095 17 C -0.537 4.537 18 H 0.066 0.934 19 C 0.020 3.980 20 N -0.906 5.906 21 Si 0.991 3.009 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.270 1.270 25 C -0.044 4.044 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.386 0.614 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.411 0.589 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.135 0.865 43 H 0.274 0.726 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.501 13.270 -17.558 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.093 3.907 3 C -0.204 4.204 4 O -0.375 6.375 5 C 0.063 3.937 6 C -0.230 4.230 7 C -0.225 4.225 8 N -0.351 5.351 9 C 0.352 3.648 10 O -0.449 6.449 11 C -0.162 4.162 12 C -0.084 4.084 13 C -0.140 4.140 14 C -0.085 4.085 15 C -0.239 4.239 16 S 0.140 5.860 17 C -0.684 4.684 18 H 0.085 0.915 19 C -0.185 4.185 20 N -0.542 5.542 21 Si 0.813 3.187 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.066 4.066 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.236 0.764 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.250 0.750 40 H 0.184 0.816 41 H 0.191 0.809 42 H 0.153 0.847 43 H 0.083 0.917 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.126 13.853 -15.861 27.143 hybrid contribution -0.211 -2.200 -0.685 2.314 sum -17.337 11.653 -16.546 26.648 Atomic orbital electron populations 1.22578 0.93270 1.03786 1.03988 1.21369 0.94351 0.92713 0.82233 1.21906 1.01912 0.92935 1.03662 1.86521 1.77641 1.30071 1.43232 1.21113 0.78960 0.96444 0.97178 1.22314 1.02518 0.95593 1.02593 1.22332 1.02465 1.00476 0.97227 1.45835 1.07038 1.57877 1.24351 1.18295 0.86925 0.77626 0.81983 1.90704 1.70073 1.46477 1.37596 1.20047 0.93023 1.05086 0.98034 1.21667 0.94749 0.95733 0.96296 1.21532 0.94076 0.99682 0.98717 1.22059 1.00918 0.93743 0.91774 1.22497 0.96081 1.03620 1.01737 1.83467 1.69338 1.06400 1.26788 1.23028 1.47378 0.92946 1.05089 0.91531 1.26007 0.93847 1.04096 0.94565 1.70100 1.38508 1.35613 1.10012 0.85109 0.78884 0.76175 0.78552 1.18486 1.19484 1.19552 1.21611 0.93151 0.94896 0.96954 0.90213 0.90648 0.91060 0.92131 0.90738 0.89808 0.76408 0.93332 0.89229 0.91704 0.91313 0.89390 0.93413 0.75018 0.81641 0.80874 0.84717 0.91661 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.11 71.98 0.58 -0.99 16 2 C 0.13 1.65 0.58 -10.79 -0.01 1.65 16 3 C -0.15 -1.64 8.32 71.98 0.60 -1.04 16 4 O -0.57 -7.58 12.68 -148.98 -1.89 -9.47 16 5 C 0.15 2.65 0.31 3.60 0.00 2.65 16 6 C -0.17 -3.32 7.74 71.98 0.56 -2.77 16 7 C -0.17 -3.19 7.69 71.98 0.55 -2.63 16 8 N -0.70 -14.90 4.65 -425.74 -1.98 -16.88 16 9 C 0.56 17.70 7.19 86.79 0.62 18.33 16 10 O -0.57 -22.21 12.55 -3.88 -0.05 -22.26 16 11 C -0.16 -5.24 5.87 -20.11 -0.12 -5.36 16 12 C -0.07 -1.61 9.54 22.57 0.22 -1.40 16 13 C -0.12 -3.07 10.02 22.21 0.22 -2.84 16 14 C -0.06 -2.28 9.79 22.48 0.22 -2.06 16 15 C -0.13 -5.76 5.45 22.65 0.12 -5.64 16 16 S -0.09 -5.25 21.40 -56.49 -1.21 -6.46 16 17 C -0.54 -31.96 9.46 67.94 0.64 -31.32 16 18 H 0.07 3.92 7.79 -2.91 -0.02 3.89 16 19 C 0.02 1.17 5.49 84.84 0.47 1.63 16 20 N -0.91 -55.20 13.22 21.64 0.29 -54.92 16 21 Si 0.99 45.05 29.55 68.60 2.03 47.07 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C -0.04 -1.91 9.34 22.70 0.21 -1.70 16 26 H 0.08 0.61 6.43 -2.38 -0.02 0.60 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.55 6.43 -2.39 -0.02 0.54 16 29 H 0.06 0.70 6.86 -2.39 -0.02 0.69 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.82 6.43 -2.39 -0.02 0.80 16 32 H 0.39 3.64 7.33 -74.06 -0.54 3.10 16 33 H 0.05 1.36 6.16 -2.39 -0.01 1.34 16 34 H 0.09 1.26 6.43 -2.39 -0.02 1.25 16 35 H 0.06 1.10 6.78 -2.39 -0.02 1.08 16 36 H 0.07 1.16 6.43 -2.39 -0.02 1.15 16 37 H 0.09 1.24 6.43 -2.38 -0.02 1.22 16 38 H 0.05 1.30 6.16 -2.39 -0.01 1.29 16 39 H 0.41 6.88 5.22 -92.71 -0.48 6.40 16 40 H 0.17 2.47 6.40 -2.91 -0.02 2.45 16 41 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 42 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.10 5.05 7.65 -2.91 -0.02 5.03 16 Total: -1.00 -77.17 359.93 2.10 -75.07 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.02 Total: 21.33 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 4.90 Total: -33.48 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.69 Total: -71.80 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -1.94 Total: -31.74 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.21 Total: -6.46 kcal Total: -77.17 2.10 -75.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347721311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.586 kcal (2) G-P(sol) polarization free energy of solvation -77.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds