Wall clock time and date at job start Tue Mar 31 2020 14:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21354 * 119.99912 * 2 1 4 4 C 1.46276 * 119.99759 * 179.97438 * 2 1 3 5 5 C 1.37034 * 125.18042 * 180.02562 * 4 2 1 6 6 C 1.36647 * 114.68760 * 179.97438 * 5 4 2 7 7 C 1.36706 * 114.78577 * 0.02562 * 6 5 4 8 8 C 1.47285 * 125.13945 * 179.97438 * 7 6 5 9 9 O 1.21610 * 120.00123 * 352.10800 * 8 7 6 10 10 N 1.34773 * 119.99847 * 172.10743 * 8 7 6 11 11 C 1.46494 * 120.00437 * 1.91561 * 10 8 7 12 12 C 1.50704 * 109.47081 * 82.21300 * 11 10 8 13 13 H 1.08001 * 119.99639 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00287 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99775 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99934 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47269 * 89.99795 * 16 14 12 18 18 H 1.48494 * 109.47334 * 210.00588 * 16 14 12 19 19 H 1.48510 * 109.47104 * 330.00245 * 16 14 12 20 20 C 1.46502 * 119.99737 * 181.92309 * 10 8 7 21 21 C 1.53000 * 109.47667 * 89.99730 * 20 10 8 22 22 C 1.52993 * 109.47318 * 179.97438 * 21 20 10 23 23 C 1.53000 * 109.47181 * 174.99973 * 22 21 20 24 24 C 1.53006 * 109.47136 * 295.00051 * 22 21 20 25 25 S 1.75830 * 109.72118 * 0.02562 * 7 6 5 26 26 H 1.09002 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46924 * 300.00720 * 1 2 3 28 28 H 1.08998 * 109.46836 * 60.00157 * 1 2 3 29 29 H 1.07999 * 122.65462 * 359.95789 * 5 4 2 30 30 H 1.08002 * 122.60895 * 179.72938 * 6 5 4 31 31 H 1.08998 * 109.47511 * 202.21633 * 11 10 8 32 32 H 1.09005 * 109.47212 * 322.21556 * 11 10 8 33 33 H 0.97008 * 119.99384 * 180.02562 * 15 14 12 34 34 H 1.09005 * 109.46734 * 210.00134 * 20 10 8 35 35 H 1.08998 * 109.47093 * 329.98919 * 20 10 8 36 36 H 1.08993 * 109.46969 * 300.00119 * 21 20 10 37 37 H 1.09000 * 109.46870 * 59.99810 * 21 20 10 38 38 H 1.08999 * 109.47123 * 54.99828 * 22 21 20 39 39 H 1.08999 * 109.47211 * 59.99908 * 23 22 21 40 40 H 1.09001 * 109.47094 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.46968 * 300.00026 * 23 22 21 42 42 H 1.08999 * 109.46932 * 299.99894 * 24 22 21 43 43 H 1.08996 * 109.47414 * 60.00259 * 24 22 21 44 44 H 1.09001 * 109.47040 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0510 0.0000 4 6 2.2384 -1.2668 0.0006 5 6 3.6031 -1.3906 0.0011 6 6 4.0593 -2.6787 0.0021 7 6 3.0808 -3.6333 0.0019 8 6 3.3150 -5.0874 0.0023 9 8 4.4417 -5.5218 -0.1417 10 7 2.2807 -5.9365 0.1623 11 6 0.9182 -5.4147 0.2937 12 6 0.3575 -5.1237 -1.0746 13 1 0.9562 -5.3093 -1.9541 14 6 -0.9197 -4.6205 -1.2036 15 7 -1.4090 -4.3670 -2.3977 16 14 -1.9554 -4.3001 0.3176 17 1 -1.7235 -2.9119 0.7910 18 1 -3.3918 -4.4761 -0.0155 19 1 -1.5743 -5.2579 1.3867 20 6 2.5190 -7.3813 0.2049 21 6 2.7665 -7.8151 1.6511 22 6 3.0148 -9.3241 1.6956 23 6 3.3849 -9.7383 3.1212 24 6 1.7465 -10.0626 1.2629 25 16 1.5003 -2.8628 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.2656 -0.5377 0.0005 30 1 5.1112 -2.9235 -0.0016 31 1 0.2924 -6.1544 0.7930 32 1 0.9356 -4.4971 0.8819 33 1 -2.3074 -4.0126 -2.4884 34 1 1.6473 -7.9051 -0.1875 35 1 3.3917 -7.6237 -0.4016 36 1 3.6382 -7.2914 2.0433 37 1 1.8938 -7.5728 2.2575 38 1 3.8315 -9.5781 1.0198 39 1 2.5682 -9.4843 3.7969 40 1 3.5622 -10.8133 3.1528 41 1 4.2884 -9.2122 3.4294 42 1 0.9298 -9.8087 1.9386 43 1 1.4829 -9.7676 0.2473 44 1 1.9235 -11.1377 1.2942 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349433010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:05 Heat of formation + Delta-G solvation = -67.718093 kcal Electronic energy + Delta-G solvation = -25614.093640 eV Core-core repulsion = 22043.389690 eV Total energy + Delta-G solvation = -3570.703951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03440 -40.41940 -38.28021 -37.51634 -36.60363 -34.62923 -32.35964 -31.36346 -30.05377 -29.17697 -27.97011 -26.48646 -24.73854 -24.33030 -22.06316 -21.44168 -20.84540 -19.45313 -19.18486 -18.86143 -17.61369 -17.11789 -16.57275 -16.42551 -16.09138 -16.06997 -15.75145 -15.59413 -15.10660 -14.79745 -14.69999 -14.49290 -14.32632 -14.03713 -13.83067 -13.60789 -13.53713 -13.23041 -13.06384 -13.01831 -12.82578 -12.68923 -12.47973 -12.22345 -12.13995 -11.83355 -11.71945 -11.56688 -11.43005 -11.28969 -11.11818 -10.90070 -10.85153 -9.91278 -9.56781 -9.36348 -8.35897 -6.38730 -0.94371 0.56516 0.83777 1.02520 1.36513 1.43307 1.48801 1.74795 2.04445 2.19946 2.28483 2.97514 3.07450 3.51481 3.92150 3.97174 4.05117 4.07034 4.26842 4.29560 4.38337 4.39916 4.48090 4.50705 4.54100 4.61639 4.70041 4.81395 4.83570 4.90473 4.92906 5.00420 5.05490 5.10636 5.15145 5.20351 5.24435 5.33538 5.34921 5.49249 5.52159 5.57238 6.07014 6.37169 6.38391 6.59787 7.04567 7.17773 8.78344 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.005008 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.136896 B = 5589.915699 C = 7099.816561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.430 3.570 3 O -0.492 6.492 4 C -0.363 4.363 5 C -0.084 4.084 6 C -0.090 4.090 7 C -0.271 4.271 8 C 0.582 3.418 9 O -0.576 6.576 10 N -0.589 5.589 11 C 0.201 3.799 12 C -0.538 4.538 13 H 0.041 0.959 14 C 0.053 3.947 15 N -0.913 5.913 16 Si 0.882 3.118 17 H -0.232 1.232 18 H -0.277 1.277 19 H -0.235 1.235 20 C 0.116 3.884 21 C -0.119 4.119 22 C -0.091 4.091 23 C -0.142 4.142 24 C -0.149 4.149 25 S 0.364 5.636 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.275 0.725 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.114 -3.000 10.534 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.310 3.690 3 O -0.372 6.372 4 C -0.482 4.482 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.394 4.394 8 C 0.371 3.629 9 O -0.459 6.459 10 N -0.318 5.318 11 C 0.077 3.923 12 C -0.580 4.580 13 H 0.059 0.941 14 C -0.151 4.151 15 N -0.550 5.550 16 Si 0.702 3.298 17 H -0.155 1.155 18 H -0.202 1.202 19 H -0.158 1.158 20 C -0.006 4.006 21 C -0.158 4.158 22 C -0.110 4.110 23 C -0.199 4.199 24 C -0.206 4.206 25 S 0.642 5.358 26 H 0.091 0.909 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.271 -3.126 10.370 10.834 hybrid contribution 0.950 0.615 -0.259 1.161 sum 1.222 -2.512 10.111 10.490 Atomic orbital electron populations 1.22301 0.91209 1.04972 1.07011 1.21850 0.92362 0.85444 0.69349 1.90500 1.72888 1.34366 1.39424 1.26941 1.00573 1.04367 1.16356 1.20567 0.93830 0.97470 0.99816 1.20433 1.00550 0.90714 1.00740 1.25136 0.99930 0.97488 1.16799 1.17345 0.84402 0.84935 0.76236 1.90678 1.23447 1.78552 1.53252 1.47872 1.07198 1.07231 1.69505 1.20041 0.80041 0.95301 0.96934 1.21318 1.00354 1.44462 0.91875 0.94118 1.25460 0.97715 0.93489 0.98400 1.69986 1.17744 1.42662 1.24562 0.86638 0.79386 0.82542 0.81191 1.15492 1.20201 1.15788 1.21656 1.02346 0.78402 0.98179 1.21934 1.01614 0.96762 0.95470 1.21034 0.98697 0.92968 0.98315 1.21792 1.01281 1.01661 0.95175 1.21905 0.96971 1.00489 1.01274 1.85997 1.01702 0.89074 1.58984 0.90911 0.85909 0.86883 0.82865 0.82718 0.91235 0.94230 0.91510 0.89296 0.91486 0.93056 0.91318 0.91387 0.92373 0.91431 0.93100 0.92356 0.93051 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.10 10.29 71.24 0.73 -4.37 16 2 C 0.43 13.99 7.22 27.78 0.20 14.19 16 3 O -0.49 -17.94 17.56 -3.26 -0.06 -18.00 16 4 C -0.36 -12.69 6.41 24.08 0.15 -12.53 16 5 C -0.08 -2.82 9.89 21.61 0.21 -2.61 16 6 C -0.09 -3.20 9.88 21.54 0.21 -2.99 16 7 C -0.27 -10.71 6.25 24.29 0.15 -10.56 16 8 C 0.58 24.52 7.58 86.62 0.66 25.18 16 9 O -0.58 -26.16 16.40 -4.06 -0.07 -26.22 16 10 N -0.59 -23.01 2.48 -830.21 -2.06 -25.07 16 11 C 0.20 7.91 3.82 85.64 0.33 8.24 16 12 C -0.54 -25.42 7.50 25.60 0.19 -25.23 16 13 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 14 C 0.05 2.51 5.07 84.66 0.43 2.94 16 15 N -0.91 -47.65 13.96 21.45 0.30 -47.35 16 16 Si 0.88 32.86 26.77 68.60 1.84 34.69 16 17 H -0.23 -7.60 7.11 99.48 0.71 -6.89 16 18 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.24 -7.91 6.54 99.48 0.65 -7.26 16 20 C 0.12 3.85 5.14 86.38 0.44 4.29 16 21 C -0.12 -3.24 5.01 30.59 0.15 -3.08 16 22 C -0.09 -1.97 2.92 -10.79 -0.03 -2.01 16 23 C -0.14 -2.57 9.19 71.98 0.66 -1.91 16 24 C -0.15 -2.96 8.95 71.98 0.64 -2.32 16 25 S 0.36 13.64 13.91 -56.49 -0.79 12.85 16 26 H 0.07 2.01 6.70 -2.39 -0.02 1.99 16 27 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.11 2.59 8.14 -2.39 -0.02 2.58 16 29 H 0.15 4.60 8.04 -2.91 -0.02 4.57 16 30 H 0.16 5.05 8.05 -2.91 -0.02 5.03 16 31 H 0.07 2.54 7.07 -2.39 -0.02 2.52 16 32 H 0.04 1.53 3.95 -21.21 -0.08 1.45 16 33 H 0.28 13.38 8.31 -92.70 -0.77 12.61 16 34 H 0.09 2.82 6.49 -2.38 -0.02 2.81 16 35 H 0.07 2.37 7.39 -2.39 -0.02 2.35 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.11 6.56 -2.39 -0.02 1.10 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -59.40 369.00 5.17 -54.23 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.86 Total: 27.64 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.14 Total: -12.77 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.76 Total: -72.42 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.12 Total: -44.22 kcal Atomic # 14 Polarization: 32.86 SS G_CDS: 1.84 Total: 34.69 kcal Atomic # 16 Polarization: 13.64 SS G_CDS: -0.79 Total: 12.85 kcal Total: -59.40 5.17 -54.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349433010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.488 kcal (2) G-P(sol) polarization free energy of solvation -59.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds