Wall clock time and date at job start Tue Mar 31 2020 13:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47698 * 265.00579 * 9 8 7 11 11 C 1.53000 * 109.46933 * 300.00354 * 10 9 8 12 12 C 1.53009 * 109.46777 * 59.99928 * 10 9 8 13 13 N 1.46499 * 109.47397 * 179.97438 * 10 9 8 14 14 C 1.34778 * 119.99862 * 179.97438 * 13 10 9 15 15 O 1.21271 * 120.00202 * 0.02562 * 14 13 10 16 16 C 1.50699 * 119.99758 * 179.97438 * 14 13 10 17 17 S 1.80996 * 109.47167 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00143 * 180.02562 * 17 16 14 19 19 H 1.07993 * 119.99832 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99786 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99718 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00046 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47181 * 90.00103 * 22 20 18 24 24 H 1.48506 * 109.47124 * 209.99922 * 22 20 18 25 25 H 1.48504 * 109.47484 * 329.99667 * 22 20 18 26 26 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 28 28 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 29 29 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 30 30 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 31 31 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 34 34 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 35 35 H 1.08997 * 109.47518 * 59.99672 * 11 10 9 36 36 H 1.09003 * 109.46855 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47028 * 299.99143 * 11 10 9 38 38 H 1.08995 * 109.47131 * 60.00264 * 12 10 9 39 39 H 1.09001 * 109.46822 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47177 * 300.00024 * 12 10 9 41 41 H 0.97005 * 119.99902 * 0.02562 * 13 10 9 42 42 H 1.08995 * 109.47447 * 300.00557 * 16 14 13 43 43 H 1.09006 * 109.47142 * 60.00365 * 16 14 13 44 44 H 0.97001 * 120.00309 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4263 -0.4746 -1.4370 11 6 3.0523 -0.7613 -2.0460 12 6 5.1377 0.5973 -2.2652 13 7 5.2266 -1.7017 -1.4365 14 6 5.5084 -2.3228 -2.5990 15 8 5.1001 -1.8656 -3.6453 16 6 6.3321 -3.5848 -2.5985 17 16 6.5362 -4.1727 -4.2982 18 6 7.5068 -5.6145 -4.0088 19 1 7.7884 -5.8826 -3.0013 20 6 7.9095 -6.4056 -5.0758 21 7 8.6341 -7.4830 -4.8596 22 14 7.4230 -5.9414 -6.8186 23 1 8.4626 -5.0572 -7.4038 24 1 7.2983 -7.1710 -7.6419 25 1 6.1213 -5.2271 -6.7956 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2128 2.3203 -0.0010 30 1 1.3339 4.5114 0.0026 31 1 3.7920 4.6381 -0.0024 32 1 5.1344 2.5754 -0.0023 33 1 5.2326 0.2265 0.4336 34 1 3.7469 -0.7414 0.5899 35 1 2.4573 0.1520 -2.0463 36 1 3.1753 -1.1148 -3.0697 37 1 2.5456 -1.5249 -1.4559 38 1 6.1165 0.8016 -1.8314 39 1 5.2603 0.2435 -3.2889 40 1 4.5427 1.5105 -2.2656 41 1 5.5529 -2.0676 -0.5995 42 1 7.3110 -3.3797 -2.1654 43 1 5.8263 -4.3486 -2.0078 44 1 8.9159 -8.0357 -5.6053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354952546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:05 Heat of formation + Delta-G solvation = -54.375428 kcal Electronic energy + Delta-G solvation = -25048.116175 eV Core-core repulsion = 21477.990805 eV Total energy + Delta-G solvation = -3570.125369 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87959 -39.54712 -37.74917 -36.34399 -32.89921 -32.40848 -31.06972 -30.40740 -28.50845 -27.81391 -27.11703 -26.74650 -25.57709 -22.52295 -22.32880 -20.64506 -19.35412 -18.22891 -17.82155 -16.60632 -16.52940 -16.17263 -15.89022 -15.62123 -14.98107 -14.94102 -14.72902 -14.27685 -13.96079 -13.71470 -13.64569 -13.30458 -13.16928 -12.80043 -12.76644 -12.44101 -12.28594 -12.00789 -11.92671 -11.68324 -11.47138 -11.24492 -11.18767 -11.10827 -11.03897 -10.98741 -10.87284 -10.54351 -9.82400 -9.22534 -9.07372 -8.97946 -8.82797 -8.45583 -8.38604 -6.87375 -6.26209 -3.97109 1.01572 1.16324 2.82422 3.01164 3.08902 3.32539 3.35979 3.48988 3.52980 3.73084 4.35772 4.45833 4.49883 4.71698 4.74676 4.78641 4.84830 4.88244 4.91747 5.05092 5.12800 5.13915 5.18832 5.21277 5.36509 5.41775 5.55494 5.59055 5.79184 5.83009 5.86751 5.93552 5.99813 6.07512 6.08363 6.13949 6.18223 6.26426 6.46320 6.49642 6.56492 6.81008 7.11340 7.78648 7.97037 8.44739 8.63614 9.20188 10.83118 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.027847 B = 0.002554 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.241812 B =10960.906591 C =11216.120647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.135 3.865 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.158 4.158 7 C -0.075 4.075 8 C -0.103 4.103 9 C -0.075 4.075 10 C 0.184 3.816 11 C -0.154 4.154 12 C -0.164 4.164 13 N -0.730 5.730 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.125 4.125 17 S -0.142 6.142 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.397 0.603 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.096 21.670 14.409 30.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.090 3.910 4 C -0.229 4.229 5 C -0.103 4.103 6 C -0.176 4.176 7 C -0.093 4.093 8 C -0.104 4.104 9 C -0.113 4.113 10 C 0.099 3.901 11 C -0.212 4.212 12 C -0.222 4.222 13 N -0.384 5.384 14 C 0.320 3.680 15 O -0.390 6.390 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 H 0.118 0.882 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.231 0.769 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.610 22.068 12.583 29.816 hybrid contribution 0.331 -0.572 0.937 1.147 sum -15.278 21.495 13.520 29.636 Atomic orbital electron populations 1.23059 0.78712 1.04082 1.01127 1.86211 1.20998 1.26396 1.88270 1.18800 0.91773 0.84388 0.96039 1.21221 0.99989 0.92413 1.09261 1.20921 0.94722 0.96907 0.97725 1.21039 0.93908 0.98398 1.04270 1.20944 1.00014 0.90987 0.97385 1.18995 0.90372 0.95373 1.05698 1.20680 0.99418 0.94885 0.96271 1.20147 0.91571 0.84290 0.94140 1.22221 0.94707 1.01681 1.02585 1.22270 0.99630 0.97896 1.02411 1.46106 1.55965 1.27144 1.09162 1.20165 0.79686 0.84732 0.83403 1.90627 1.51591 1.65500 1.31290 1.23299 1.02155 0.97200 1.04878 1.84754 1.70491 1.32299 1.03993 1.22334 1.37106 1.09263 0.98094 0.89441 1.24718 0.93586 0.93814 0.99257 1.69940 1.35049 1.14326 1.32506 0.86728 0.81841 0.79081 0.84156 1.19245 1.20014 1.15900 0.88166 0.92855 0.92669 0.85585 0.86011 0.85947 0.85320 0.90530 0.89987 0.92437 0.90721 0.92339 0.92967 0.90131 0.92050 0.76938 0.88683 0.88637 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -2.94 7.09 -19.42 -0.14 -3.08 16 3 C 0.14 1.32 5.21 -39.22 -0.20 1.11 16 4 C -0.21 -1.75 9.04 -39.43 -0.36 -2.11 16 5 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 6 C -0.16 -1.24 10.04 -39.56 -0.40 -1.64 16 7 C -0.08 -0.65 8.28 -39.61 -0.33 -0.98 16 8 C -0.10 -1.01 4.01 -104.48 -0.42 -1.42 16 9 C -0.07 -0.73 4.38 -27.89 -0.12 -0.85 16 10 C 0.18 2.27 0.83 -131.82 -0.11 2.16 16 11 C -0.15 -2.09 6.90 37.16 0.26 -1.84 16 12 C -0.16 -2.12 7.91 37.16 0.29 -1.83 16 13 N -0.73 -9.71 5.11 -47.61 -0.24 -9.96 16 14 C 0.53 9.53 7.27 -10.99 -0.08 9.45 16 15 O -0.52 -10.86 12.07 5.57 0.07 -10.79 16 16 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 18 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.83 13.97 55.49 0.78 -26.05 16 22 Si 0.86 22.00 27.74 -169.99 -4.71 17.29 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 30 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 35 H 0.06 0.74 5.67 -51.93 -0.29 0.44 16 36 H 0.07 1.25 6.17 -51.93 -0.32 0.93 16 37 H 0.06 0.78 7.44 -51.93 -0.39 0.40 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.30 6.17 -51.93 -0.32 0.98 16 40 H 0.06 0.72 6.41 -51.93 -0.33 0.39 16 41 H 0.40 4.17 8.47 -40.82 -0.35 3.83 16 42 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 44 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -34.24 361.68 -7.71 -41.96 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.48 Total: 2.97 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.44 Total: -12.18 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.53 Total: -36.01 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.07 Total: -13.87 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.24 -7.71 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354952546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.419 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds