Wall clock time and date at job start Tue Mar 31 2020 13:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47698 * 265.00579 * 9 8 7 11 11 C 1.53000 * 109.46933 * 300.00354 * 10 9 8 12 12 C 1.53009 * 109.46777 * 59.99928 * 10 9 8 13 13 N 1.46499 * 109.47397 * 179.97438 * 10 9 8 14 14 C 1.34778 * 119.99862 * 179.97438 * 13 10 9 15 15 O 1.21271 * 120.00202 * 0.02562 * 14 13 10 16 16 C 1.50699 * 119.99758 * 179.97438 * 14 13 10 17 17 S 1.80996 * 109.47167 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00143 * 180.02562 * 17 16 14 19 19 H 1.07993 * 119.99832 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99786 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99718 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00046 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47181 * 90.00103 * 22 20 18 24 24 H 1.48506 * 109.47124 * 209.99922 * 22 20 18 25 25 H 1.48504 * 109.47484 * 329.99667 * 22 20 18 26 26 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 28 28 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 29 29 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 30 30 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 31 31 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 32 32 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 34 34 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 35 35 H 1.08997 * 109.47518 * 59.99672 * 11 10 9 36 36 H 1.09003 * 109.46855 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47028 * 299.99143 * 11 10 9 38 38 H 1.08995 * 109.47131 * 60.00264 * 12 10 9 39 39 H 1.09001 * 109.46822 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47177 * 300.00024 * 12 10 9 41 41 H 0.97005 * 119.99902 * 0.02562 * 13 10 9 42 42 H 1.08995 * 109.47447 * 300.00557 * 16 14 13 43 43 H 1.09006 * 109.47142 * 60.00365 * 16 14 13 44 44 H 0.97001 * 120.00309 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4263 -0.4746 -1.4370 11 6 3.0523 -0.7613 -2.0460 12 6 5.1377 0.5973 -2.2652 13 7 5.2266 -1.7017 -1.4365 14 6 5.5084 -2.3228 -2.5990 15 8 5.1001 -1.8656 -3.6453 16 6 6.3321 -3.5848 -2.5985 17 16 6.5362 -4.1727 -4.2982 18 6 7.5068 -5.6145 -4.0088 19 1 7.7884 -5.8826 -3.0013 20 6 7.9095 -6.4056 -5.0758 21 7 8.6341 -7.4830 -4.8596 22 14 7.4230 -5.9414 -6.8186 23 1 8.4626 -5.0572 -7.4038 24 1 7.2983 -7.1710 -7.6419 25 1 6.1213 -5.2271 -6.7956 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.2128 2.3203 -0.0010 30 1 1.3339 4.5114 0.0026 31 1 3.7920 4.6381 -0.0024 32 1 5.1344 2.5754 -0.0023 33 1 5.2326 0.2265 0.4336 34 1 3.7469 -0.7414 0.5899 35 1 2.4573 0.1520 -2.0463 36 1 3.1753 -1.1148 -3.0697 37 1 2.5456 -1.5249 -1.4559 38 1 6.1165 0.8016 -1.8314 39 1 5.2603 0.2435 -3.2889 40 1 4.5427 1.5105 -2.2656 41 1 5.5529 -2.0676 -0.5995 42 1 7.3110 -3.3797 -2.1654 43 1 5.8263 -4.3486 -2.0078 44 1 8.9159 -8.0357 -5.6053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354952546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:05 Heat of formation + Delta-G solvation = -76.201775 kcal Electronic energy + Delta-G solvation = -25049.062636 eV Core-core repulsion = 21477.990805 eV Total energy + Delta-G solvation = -3571.071831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65608 -40.70509 -38.42096 -37.41495 -34.66957 -33.97781 -32.08369 -31.00796 -29.92470 -28.46844 -28.09210 -27.83802 -27.48882 -23.38590 -22.93321 -21.72082 -20.51194 -19.88444 -18.78666 -17.96576 -17.28425 -17.11163 -17.07502 -16.64620 -16.42229 -16.36643 -15.73533 -15.28256 -15.10592 -15.02510 -14.79879 -14.54898 -14.39240 -13.91477 -13.81947 -13.53311 -13.34247 -13.04284 -13.02386 -12.87881 -12.78947 -12.62918 -12.58352 -12.23726 -12.07877 -11.95558 -11.86850 -11.83108 -11.64468 -11.16655 -10.62866 -10.51408 -10.06380 -9.72387 -9.01880 -8.97613 -8.51133 -6.21123 0.39950 0.55335 1.00787 1.31388 1.47452 1.57238 1.65438 2.23910 2.28304 2.46251 2.73196 2.86746 2.87065 3.73379 3.84468 3.87832 4.05020 4.08281 4.15369 4.25838 4.28417 4.33197 4.41658 4.48902 4.49427 4.52811 4.71392 4.76603 4.76775 4.82066 4.83172 4.89630 5.00775 5.04855 5.19716 5.35525 5.41932 5.45393 5.58545 5.64299 5.67130 5.71351 5.92795 6.11999 6.51937 6.60331 6.94173 7.30350 8.61395 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.027847 B = 0.002554 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.241812 B =10960.906591 C =11216.120647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.120 3.880 4 C -0.219 4.219 5 C -0.088 4.088 6 C -0.164 4.164 7 C -0.081 4.081 8 C -0.123 4.123 9 C -0.064 4.064 10 C 0.184 3.816 11 C -0.143 4.143 12 C -0.157 4.157 13 N -0.708 5.708 14 C 0.538 3.462 15 O -0.550 6.550 16 C -0.112 4.112 17 S -0.173 6.173 18 C -0.528 4.528 19 H 0.061 0.939 20 C 0.044 3.956 21 N -0.918 5.918 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.414 0.586 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.960 23.689 15.462 32.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.075 3.925 4 C -0.237 4.237 5 C -0.106 4.106 6 C -0.182 4.182 7 C -0.099 4.099 8 C -0.124 4.124 9 C -0.101 4.101 10 C 0.099 3.901 11 C -0.201 4.201 12 C -0.215 4.215 13 N -0.362 5.362 14 C 0.323 3.677 15 O -0.428 6.428 16 C -0.263 4.263 17 S 0.053 5.947 18 C -0.676 4.676 19 H 0.079 0.921 20 C -0.161 4.161 21 N -0.556 5.556 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.184 1.184 25 H -0.161 1.161 26 H 0.127 0.873 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.251 0.749 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.476 24.090 13.688 32.235 hybrid contribution 0.529 -1.103 0.767 1.444 sum -15.947 22.987 14.455 31.490 Atomic orbital electron populations 1.23247 0.77378 1.04991 1.01977 1.86164 1.22521 1.26732 1.88398 1.19022 0.92110 0.84851 0.96535 1.21478 1.00897 0.92324 1.09018 1.21266 0.95075 0.97545 0.96700 1.21344 0.94174 0.99067 1.03656 1.21165 1.00829 0.90871 0.97032 1.19085 0.90566 0.95591 1.07145 1.20567 1.00578 0.95093 0.93910 1.20265 0.90408 0.83399 0.96047 1.22088 0.95707 1.01832 1.00441 1.22181 1.00634 0.98309 1.00395 1.45913 1.54841 1.26935 1.08493 1.19847 0.79457 0.84254 0.84140 1.90638 1.53060 1.66267 1.32829 1.23294 1.03807 0.98485 1.00707 1.84674 1.69733 1.30825 1.09435 1.22479 1.37401 1.10668 0.97058 0.92053 1.25572 0.93597 0.93801 1.03105 1.70017 1.36177 1.15383 1.34007 0.85857 0.81412 0.79336 0.79695 1.18689 1.18364 1.16096 0.87330 0.91515 0.92265 0.84119 0.83873 0.84068 0.84083 0.88700 0.89935 0.91740 0.94145 0.92352 0.91690 0.93607 0.90954 0.74936 0.87074 0.87218 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -5.83 7.09 -92.39 -0.66 -6.48 16 3 C 0.12 2.14 5.21 22.51 0.12 2.26 16 4 C -0.22 -3.21 9.04 22.37 0.20 -3.01 16 5 C -0.09 -1.13 10.04 22.26 0.22 -0.91 16 6 C -0.16 -2.16 10.04 22.28 0.22 -1.93 16 7 C -0.08 -1.20 8.28 22.25 0.18 -1.02 16 8 C -0.12 -2.15 4.01 -19.77 -0.08 -2.23 16 9 C -0.06 -1.10 4.38 29.85 0.13 -0.97 16 10 C 0.18 4.27 0.83 3.61 0.00 4.27 16 11 C -0.14 -3.82 6.90 71.98 0.50 -3.32 16 12 C -0.16 -3.88 7.91 71.99 0.57 -3.31 16 13 N -0.71 -17.68 5.11 -422.92 -2.16 -19.84 16 14 C 0.54 18.76 7.27 87.66 0.64 19.40 16 15 O -0.55 -23.31 12.07 -3.00 -0.04 -23.35 16 16 C -0.11 -4.29 6.16 71.24 0.44 -3.85 16 17 S -0.17 -8.85 18.55 -56.49 -1.05 -9.90 16 18 C -0.53 -31.12 10.04 67.95 0.68 -30.44 16 19 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 20 C 0.04 2.64 5.50 84.86 0.47 3.11 16 21 N -0.92 -56.43 13.97 21.65 0.30 -56.13 16 22 Si 0.92 45.57 27.74 68.60 1.90 47.47 16 23 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 26 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 0.55 7.66 -2.39 -0.02 0.54 16 28 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 29 H 0.14 1.52 6.30 -2.91 -0.02 1.50 16 30 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 31 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 32 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.09 1.29 8.05 -2.38 -0.02 1.27 16 34 H 0.08 1.44 7.69 -2.38 -0.02 1.42 16 35 H 0.06 1.62 5.67 -2.39 -0.01 1.60 16 36 H 0.04 1.36 6.17 -2.39 -0.01 1.35 16 37 H 0.06 1.53 7.44 -2.39 -0.02 1.51 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.04 1.48 6.17 -2.39 -0.01 1.46 16 40 H 0.07 1.61 6.41 -2.39 -0.02 1.59 16 41 H 0.41 7.64 8.47 -92.70 -0.79 6.86 16 42 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 43 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 44 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -74.79 361.68 3.90 -70.89 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.19 Total: 17.97 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 5.41 Total: -20.63 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.86 Total: -75.97 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.69 Total: -29.83 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -74.79 3.90 -70.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354952546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.314 kcal (2) G-P(sol) polarization free energy of solvation -74.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds