Wall clock time and date at job start Tue Mar 31 2020 13:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47038 * 2 1 4 4 C 1.53002 * 109.46562 * 240.00418 * 2 1 3 5 5 C 1.50695 * 109.47291 * 120.00805 * 2 1 3 6 6 C 1.38259 * 120.00006 * 13.83814 * 5 2 1 7 7 C 1.38213 * 119.99998 * 179.97438 * 6 5 2 8 8 C 1.38256 * 120.00223 * 0.02562 * 7 6 5 9 9 C 1.38221 * 119.99664 * 359.70963 * 8 7 6 10 10 C 1.38210 * 119.99902 * 193.82071 * 5 2 1 11 11 S 1.76202 * 120.00189 * 359.97438 * 10 5 2 12 12 O 1.42104 * 106.40026 * 81.66536 * 11 10 5 13 13 O 1.42103 * 106.39904 * 308.74876 * 11 10 5 14 14 N 1.65599 * 107.21563 * 195.20759 * 11 10 5 15 15 C 1.36936 * 119.99992 * 96.85719 * 14 11 10 16 16 H 1.08002 * 120.00124 * 138.27854 * 15 14 11 17 17 C 1.38814 * 119.99754 * 318.27652 * 15 14 11 18 18 N 1.31620 * 119.99971 * 352.52021 * 17 15 14 19 19 Si 1.86796 * 119.99965 * 172.51763 * 17 15 14 20 20 H 1.48494 * 109.47510 * 270.00051 * 19 17 15 21 21 H 1.48502 * 109.47162 * 30.00095 * 19 17 15 22 22 H 1.48505 * 109.47254 * 149.99645 * 19 17 15 23 23 C 1.46495 * 119.99832 * 276.84656 * 14 11 10 24 24 C 1.53008 * 117.49616 * 185.82186 * 23 14 11 25 25 C 1.53003 * 117.49667 * 117.16646 * 23 14 11 26 26 H 1.09008 * 109.46879 * 299.99597 * 1 2 3 27 27 H 1.08998 * 109.47615 * 59.99100 * 1 2 3 28 28 H 1.09002 * 109.47660 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47036 * 208.95804 * 3 2 1 30 30 H 1.08994 * 109.47680 * 328.96029 * 3 2 1 31 31 H 1.09005 * 109.46664 * 88.96993 * 3 2 1 32 32 H 1.09005 * 109.47432 * 332.58630 * 4 2 1 33 33 H 1.09002 * 109.47291 * 92.58909 * 4 2 1 34 34 H 1.09002 * 109.46941 * 212.58535 * 4 2 1 35 35 H 1.08005 * 119.99996 * 0.02562 * 6 5 2 36 36 H 1.08001 * 120.00046 * 180.02562 * 7 6 5 37 37 H 1.07999 * 120.00415 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.99836 * 180.29365 * 9 8 7 39 39 H 0.97000 * 119.99980 * 175.08972 * 18 17 15 40 40 H 1.09001 * 115.55549 * 331.49061 * 23 14 11 41 41 H 1.08993 * 117.49993 * 0.02562 * 24 23 14 42 42 H 1.09002 * 117.49568 * 145.02521 * 24 23 14 43 43 H 1.09001 * 117.49542 * 214.98195 * 25 23 14 44 44 H 1.08999 * 117.49959 * 359.96708 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 6 1.1667 -1.4783 1.9871 7 6 1.6276 -2.1304 3.1152 8 6 2.9541 -2.0146 3.4872 9 6 3.8207 -1.2515 2.7276 10 6 3.3585 -0.5950 1.6020 11 16 4.4620 0.3826 0.6369 12 8 4.2621 1.7302 1.0409 13 8 4.3158 -0.0558 -0.7069 14 7 6.0017 -0.0196 1.0951 15 6 6.7156 -0.9343 0.3680 16 1 7.7620 -0.7630 0.1629 17 6 6.0942 -2.0818 -0.1056 18 7 4.8635 -2.3646 0.2654 19 14 7.0048 -3.2245 -1.2693 20 1 6.7510 -2.8077 -2.6718 21 1 8.4617 -3.1581 -0.9892 22 1 6.5259 -4.6163 -1.0721 23 6 6.6000 0.6034 2.2783 24 6 8.0696 0.2951 2.5721 25 6 6.9701 -0.3115 3.4475 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.0088 1.4853 -0.4976 30 1 1.3310 2.0786 -0.5298 31 1 2.1436 1.7911 1.0276 32 1 1.3008 -1.4543 -1.5728 33 1 2.2047 0.0044 -2.0459 34 1 2.9774 -1.2275 -1.0194 35 1 0.1305 -1.5692 1.6963 36 1 0.9515 -2.7305 3.7061 37 1 3.3141 -2.5238 4.3689 38 1 4.8580 -1.1648 3.0155 39 1 4.4038 -3.1269 -0.1200 40 1 6.2382 1.6035 2.5168 41 1 8.5913 -0.3709 1.8848 42 1 8.6744 1.0923 3.0043 43 1 6.8520 0.0869 4.4552 44 1 6.7679 -1.3768 3.3365 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356132899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:23 Heat of formation + Delta-G solvation = 9.916675 kcal Electronic energy + Delta-G solvation = -28340.090549 eV Core-core repulsion = 24772.753095 eV Total energy + Delta-G solvation = -3567.337454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.23769 -37.36131 -36.04274 -35.88094 -34.23128 -33.22395 -30.66512 -30.38780 -29.29864 -27.01387 -26.47633 -24.88397 -22.54498 -22.09182 -21.62417 -20.64093 -19.18090 -18.40375 -17.51694 -16.48618 -16.09324 -15.14160 -15.00214 -14.58446 -14.24718 -14.09715 -13.93913 -13.79647 -13.43705 -13.28938 -13.15578 -12.42559 -12.25905 -11.83941 -11.76842 -11.62385 -11.44160 -11.38172 -11.21065 -11.09871 -10.99347 -10.76725 -10.69841 -10.51607 -10.42748 -10.32018 -10.08749 -10.03068 -9.84865 -9.65755 -9.37419 -9.05783 -8.83633 -8.36545 -8.00484 -7.62831 -6.32210 -4.07969 1.81042 1.97471 2.14399 3.25612 3.31337 3.33344 4.13298 4.33072 4.49278 4.60051 4.93004 5.05841 5.19057 5.22514 5.43442 5.55259 5.63156 5.65849 5.70949 5.74334 5.82700 5.93157 5.98937 6.08389 6.14409 6.17972 6.26376 6.28158 6.34764 6.41532 6.50362 6.57077 6.60466 6.68446 6.71243 6.81277 6.84957 6.92726 7.06142 7.10042 7.13259 7.43140 7.54821 7.69313 7.72777 8.37211 8.97732 9.40367 10.72420 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.007643 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.312415 B = 3662.499213 C = 4033.533378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 C -0.185 4.185 4 C -0.158 4.158 5 C 0.015 3.985 6 C -0.152 4.152 7 C -0.093 4.093 8 C -0.156 4.156 9 C 0.001 3.999 10 C -0.575 4.575 11 S 2.702 3.298 12 O -1.021 7.021 13 O -0.940 6.940 14 N -0.837 5.837 15 C -0.300 4.300 16 H 0.087 0.913 17 C 0.046 3.954 18 N -0.877 5.877 19 Si 0.929 3.071 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.286 1.286 23 C 0.081 3.919 24 C -0.173 4.173 25 C -0.210 4.210 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 1.260 4.380 6.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.051 4.051 3 C -0.242 4.242 4 C -0.215 4.215 5 C 0.013 3.987 6 C -0.171 4.171 7 C -0.111 4.111 8 C -0.175 4.175 9 C -0.017 4.017 10 C -0.661 4.661 11 S 2.798 3.202 12 O -1.011 7.011 13 O -0.930 6.930 14 N -0.664 5.664 15 C -0.433 4.433 16 H 0.104 0.896 17 C -0.160 4.160 18 N -0.517 5.517 19 Si 0.756 3.244 20 H -0.201 1.201 21 H -0.199 1.199 22 H -0.212 1.212 23 C -0.028 4.028 24 C -0.212 4.212 25 C -0.250 4.250 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.152 0.848 39 H 0.090 0.910 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.335 1.724 3.745 5.982 hybrid contribution 0.023 -1.473 0.042 1.474 sum -4.312 0.251 3.787 5.744 Atomic orbital electron populations 1.21977 0.94368 1.01492 1.01394 1.19854 0.95888 0.95079 0.94306 1.22970 1.02281 0.95026 1.03955 1.22588 1.04181 1.00169 0.94545 1.19287 0.91703 0.94210 0.93505 1.20956 0.99323 1.00174 0.96611 1.21043 0.95678 0.98026 0.96367 1.21028 0.94074 1.01570 1.00791 1.20851 0.99043 0.90842 0.90988 1.30582 1.08549 1.16683 1.10246 1.02305 0.72248 0.71586 0.74065 1.93498 1.86803 1.35588 1.85200 1.93449 1.84674 1.81316 1.33565 1.52330 1.29710 1.52439 1.31922 1.18881 0.96724 0.97234 1.30427 0.89558 1.25428 0.96736 0.95950 0.97880 1.69529 1.11306 1.29894 1.40990 0.85883 0.78878 0.78874 0.80735 1.20122 1.19928 1.21154 1.21598 0.97249 0.95992 0.87990 1.23062 0.91589 1.03247 1.03287 1.23368 1.05675 1.00881 0.95070 0.92758 0.92518 0.92411 0.91445 0.91543 0.90244 0.94927 0.92760 0.85197 0.86392 0.87139 0.87006 0.84841 0.90967 0.86402 0.87621 0.89832 0.89815 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 6.90 37.16 0.26 -1.80 16 2 C -0.05 -0.98 0.74 -155.66 -0.12 -1.10 16 3 C -0.18 -3.71 6.64 37.16 0.25 -3.46 16 4 C -0.16 -3.25 7.49 37.16 0.28 -2.97 16 5 C 0.01 0.30 4.47 -104.63 -0.47 -0.17 16 6 C -0.15 -2.74 9.07 -39.58 -0.36 -3.10 16 7 C -0.09 -1.59 10.05 -39.58 -0.40 -1.98 16 8 C -0.16 -2.85 10.05 -39.58 -0.40 -3.25 16 9 C 0.00 0.03 8.58 -39.58 -0.34 -0.31 16 10 C -0.58 -12.80 3.68 -39.58 -0.15 -12.95 16 11 S 2.70 64.84 2.85 -107.50 -0.31 64.53 16 12 O -1.02 -25.05 13.51 -57.17 -0.77 -25.82 16 13 O -0.94 -24.16 9.24 -57.17 -0.53 -24.69 16 14 N -0.84 -19.54 2.41 -53.42 -0.13 -19.67 16 15 C -0.30 -7.34 8.17 -15.06 -0.12 -7.47 16 16 H 0.09 2.05 6.70 -52.49 -0.35 1.70 16 17 C 0.05 1.13 4.56 -17.43 -0.08 1.05 16 18 N -0.88 -21.87 7.75 55.49 0.43 -21.44 16 19 Si 0.93 20.31 29.56 -169.99 -5.03 15.28 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 23 C 0.08 1.62 5.92 -67.93 -0.40 1.22 16 24 C -0.17 -2.98 9.82 -26.69 -0.26 -3.25 16 25 C -0.21 -3.64 8.71 -26.69 -0.23 -3.87 16 26 H 0.05 0.76 8.09 -51.92 -0.42 0.34 16 27 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 28 H 0.06 0.81 6.87 -51.93 -0.36 0.46 16 29 H 0.07 1.51 3.97 -32.60 -0.13 1.38 16 30 H 0.07 1.12 7.83 -51.93 -0.41 0.71 16 31 H 0.08 1.64 6.46 -51.93 -0.34 1.30 16 32 H 0.03 0.59 7.78 -51.93 -0.40 0.19 16 33 H 0.05 1.09 7.73 -51.93 -0.40 0.69 16 34 H 0.13 3.09 4.30 -51.94 -0.22 2.87 16 35 H 0.12 1.81 5.96 -52.48 -0.31 1.49 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.13 2.76 4.07 -52.49 -0.21 2.55 16 39 H 0.28 6.94 8.32 -40.82 -0.34 6.60 16 40 H 0.12 2.27 7.50 -51.93 -0.39 1.88 16 41 H 0.11 1.94 6.47 -51.93 -0.34 1.60 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.10 1.88 7.32 -51.93 -0.38 1.50 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -27.86 331.40 -9.79 -37.65 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.91 Total: 12.57 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: -2.54 Total: -43.41 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.30 Total: -41.12 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -1.30 Total: -50.50 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Atomic # 16 Polarization: 64.84 SS G_CDS: -0.31 Total: 64.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.86 -9.79 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356132899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.566 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds