Wall clock time and date at job start Tue Mar 31 2020 13:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47038 * 2 1 4 4 C 1.53002 * 109.46562 * 240.00418 * 2 1 3 5 5 C 1.50695 * 109.47291 * 120.00805 * 2 1 3 6 6 C 1.38259 * 120.00006 * 13.83814 * 5 2 1 7 7 C 1.38213 * 119.99998 * 179.97438 * 6 5 2 8 8 C 1.38256 * 120.00223 * 0.02562 * 7 6 5 9 9 C 1.38221 * 119.99664 * 359.70963 * 8 7 6 10 10 C 1.38210 * 119.99902 * 193.82071 * 5 2 1 11 11 S 1.76202 * 120.00189 * 359.97438 * 10 5 2 12 12 O 1.42104 * 106.40026 * 81.66536 * 11 10 5 13 13 O 1.42103 * 106.39904 * 308.74876 * 11 10 5 14 14 N 1.65599 * 107.21563 * 195.20759 * 11 10 5 15 15 C 1.36936 * 119.99992 * 96.85719 * 14 11 10 16 16 H 1.08002 * 120.00124 * 138.27854 * 15 14 11 17 17 C 1.38814 * 119.99754 * 318.27652 * 15 14 11 18 18 N 1.31620 * 119.99971 * 352.52021 * 17 15 14 19 19 Si 1.86796 * 119.99965 * 172.51763 * 17 15 14 20 20 H 1.48494 * 109.47510 * 270.00051 * 19 17 15 21 21 H 1.48502 * 109.47162 * 30.00095 * 19 17 15 22 22 H 1.48505 * 109.47254 * 149.99645 * 19 17 15 23 23 C 1.46495 * 119.99832 * 276.84656 * 14 11 10 24 24 C 1.53008 * 117.49616 * 185.82186 * 23 14 11 25 25 C 1.53003 * 117.49667 * 117.16646 * 23 14 11 26 26 H 1.09008 * 109.46879 * 299.99597 * 1 2 3 27 27 H 1.08998 * 109.47615 * 59.99100 * 1 2 3 28 28 H 1.09002 * 109.47660 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47036 * 208.95804 * 3 2 1 30 30 H 1.08994 * 109.47680 * 328.96029 * 3 2 1 31 31 H 1.09005 * 109.46664 * 88.96993 * 3 2 1 32 32 H 1.09005 * 109.47432 * 332.58630 * 4 2 1 33 33 H 1.09002 * 109.47291 * 92.58909 * 4 2 1 34 34 H 1.09002 * 109.46941 * 212.58535 * 4 2 1 35 35 H 1.08005 * 119.99996 * 0.02562 * 6 5 2 36 36 H 1.08001 * 120.00046 * 180.02562 * 7 6 5 37 37 H 1.07999 * 120.00415 * 179.97438 * 8 7 6 38 38 H 1.07997 * 119.99836 * 180.29365 * 9 8 7 39 39 H 0.97000 * 119.99980 * 175.08972 * 18 17 15 40 40 H 1.09001 * 115.55549 * 331.49061 * 23 14 11 41 41 H 1.08993 * 117.49993 * 0.02562 * 24 23 14 42 42 H 1.09002 * 117.49568 * 145.02521 * 24 23 14 43 43 H 1.09001 * 117.49542 * 214.98195 * 25 23 14 44 44 H 1.08999 * 117.49959 * 359.96708 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 6 1.1667 -1.4783 1.9871 7 6 1.6276 -2.1304 3.1152 8 6 2.9541 -2.0146 3.4872 9 6 3.8207 -1.2515 2.7276 10 6 3.3585 -0.5950 1.6020 11 16 4.4620 0.3826 0.6369 12 8 4.2621 1.7302 1.0409 13 8 4.3158 -0.0558 -0.7069 14 7 6.0017 -0.0196 1.0951 15 6 6.7156 -0.9343 0.3680 16 1 7.7620 -0.7630 0.1629 17 6 6.0942 -2.0818 -0.1056 18 7 4.8635 -2.3646 0.2654 19 14 7.0048 -3.2245 -1.2693 20 1 6.7510 -2.8077 -2.6718 21 1 8.4617 -3.1581 -0.9892 22 1 6.5259 -4.6163 -1.0721 23 6 6.6000 0.6034 2.2783 24 6 8.0696 0.2951 2.5721 25 6 6.9701 -0.3115 3.4475 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.0088 1.4853 -0.4976 30 1 1.3310 2.0786 -0.5298 31 1 2.1436 1.7911 1.0276 32 1 1.3008 -1.4543 -1.5728 33 1 2.2047 0.0044 -2.0459 34 1 2.9774 -1.2275 -1.0194 35 1 0.1305 -1.5692 1.6963 36 1 0.9515 -2.7305 3.7061 37 1 3.3141 -2.5238 4.3689 38 1 4.8580 -1.1648 3.0155 39 1 4.4038 -3.1269 -0.1200 40 1 6.2382 1.6035 2.5168 41 1 8.5913 -0.3709 1.8848 42 1 8.6744 1.0923 3.0043 43 1 6.8520 0.0869 4.4552 44 1 6.7679 -1.3768 3.3365 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356132899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:22 Heat of formation + Delta-G solvation = -4.365822 kcal Electronic energy + Delta-G solvation = -28340.709885 eV Core-core repulsion = 24772.753095 eV Total energy + Delta-G solvation = -3567.956790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.68957 -38.93102 -37.73377 -37.55378 -35.97539 -34.95450 -32.31966 -31.94820 -30.74767 -28.41699 -27.99617 -26.68680 -24.00973 -23.54465 -23.05406 -22.23993 -20.84861 -19.96824 -19.13360 -18.21213 -17.76763 -16.93042 -16.47562 -16.08643 -15.98934 -15.64204 -15.41066 -15.37481 -14.89754 -14.85244 -14.64450 -14.10336 -13.80779 -13.53237 -13.25213 -13.09767 -13.00337 -12.92550 -12.81004 -12.68900 -12.52519 -12.32210 -12.25902 -12.22704 -12.03836 -11.95192 -11.66924 -11.64643 -11.42499 -11.16975 -10.95434 -10.71818 -10.63708 -9.86032 -9.46646 -9.34031 -8.15391 -5.95235 0.19713 0.36973 0.68335 1.47598 1.52673 1.57602 2.37324 2.72310 2.89199 3.08588 3.15265 3.42610 3.68207 3.80768 4.01702 4.13815 4.19531 4.25958 4.28880 4.37790 4.40528 4.48745 4.54414 4.66006 4.70275 4.78159 4.83182 4.88567 4.93073 4.99699 5.02924 5.13353 5.20630 5.22084 5.23587 5.29043 5.35462 5.51583 5.59229 5.64527 5.67348 5.68310 5.80657 6.04747 6.27316 6.47321 7.15868 7.54688 8.84010 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.007643 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.312415 B = 3662.499213 C = 4033.533378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.053 4.053 3 C -0.186 4.186 4 C -0.157 4.157 5 C -0.007 4.007 6 C -0.153 4.153 7 C -0.085 4.085 8 C -0.160 4.160 9 C -0.021 4.021 10 C -0.592 4.592 11 S 2.696 3.304 12 O -1.043 7.043 13 O -0.970 6.970 14 N -0.847 5.847 15 C -0.311 4.311 16 H 0.086 0.914 17 C 0.008 3.992 18 N -0.880 5.880 19 Si 0.973 3.027 20 H -0.289 1.289 21 H -0.261 1.261 22 H -0.283 1.283 23 C 0.044 3.956 24 C -0.158 4.158 25 C -0.190 4.190 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.272 0.728 40 H 0.118 0.882 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 0.217 6.049 8.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.053 4.053 3 C -0.244 4.244 4 C -0.215 4.215 5 C -0.008 4.008 6 C -0.171 4.171 7 C -0.103 4.103 8 C -0.179 4.179 9 C -0.040 4.040 10 C -0.681 4.681 11 S 2.797 3.203 12 O -1.033 7.033 13 O -0.959 6.959 14 N -0.675 5.675 15 C -0.443 4.443 16 H 0.103 0.897 17 C -0.196 4.196 18 N -0.520 5.520 19 Si 0.799 3.201 20 H -0.216 1.216 21 H -0.185 1.185 22 H -0.209 1.209 23 C -0.064 4.064 24 C -0.197 4.197 25 C -0.230 4.230 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.724 0.713 5.417 7.913 hybrid contribution 0.459 -1.121 -0.436 1.287 sum -5.266 -0.408 4.981 7.260 Atomic orbital electron populations 1.21962 0.90883 1.02987 1.02933 1.19895 0.98669 0.93673 0.93102 1.22943 1.01549 0.96777 1.03108 1.22486 1.03382 1.00318 0.95291 1.19607 0.91558 0.95215 0.94467 1.21372 1.00460 0.98980 0.96325 1.21549 0.95696 0.97078 0.95960 1.21398 0.94510 1.00774 1.01231 1.20980 0.99487 0.92044 0.91501 1.30217 1.09059 1.17830 1.10999 1.02105 0.72784 0.71494 0.73953 1.93452 1.87219 1.37195 1.85442 1.93418 1.85271 1.81666 1.35574 1.52264 1.29671 1.52430 1.33161 1.19007 0.96772 0.97397 1.31161 0.89651 1.26018 0.97463 0.97072 0.99044 1.69663 1.11697 1.29585 1.41076 0.85212 0.78881 0.77524 0.78484 1.21580 1.18531 1.20910 1.21806 0.99479 0.96637 0.88499 1.23143 0.90465 1.03561 1.02514 1.23351 1.04424 0.99479 0.95725 0.91350 0.90962 0.90876 0.94500 0.88847 0.91454 0.92995 0.93641 0.88297 0.83204 0.82871 0.84249 0.85528 0.91798 0.86424 0.88958 0.86473 0.86597 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 6.90 71.98 0.50 -3.09 16 2 C -0.05 -2.00 0.74 -52.93 -0.04 -2.04 16 3 C -0.19 -7.58 6.64 71.98 0.48 -7.10 16 4 C -0.16 -6.54 7.49 71.98 0.54 -6.00 16 5 C -0.01 -0.27 4.47 -19.87 -0.09 -0.36 16 6 C -0.15 -5.05 9.07 22.27 0.20 -4.85 16 7 C -0.08 -2.59 10.05 22.27 0.22 -2.36 16 8 C -0.16 -5.50 10.05 22.27 0.22 -5.28 16 9 C -0.02 -0.88 8.58 22.27 0.19 -0.69 16 10 C -0.59 -26.64 3.68 22.27 0.08 -26.56 16 11 S 2.70 134.78 2.85 -56.49 -0.16 134.61 16 12 O -1.04 -53.75 13.51 -128.00 -1.73 -55.48 16 13 O -0.97 -52.42 9.24 -128.00 -1.18 -53.60 16 14 N -0.85 -40.91 2.41 -322.93 -0.78 -41.69 16 15 C -0.31 -15.65 8.17 84.03 0.69 -14.96 16 16 H 0.09 4.18 6.70 -2.91 -0.02 4.16 16 17 C 0.01 0.42 4.56 84.86 0.39 0.81 16 18 N -0.88 -44.97 7.75 21.65 0.17 -44.80 16 19 Si 0.97 42.28 29.56 68.60 2.03 44.30 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 C 0.04 1.78 5.92 45.00 0.27 2.05 16 24 C -0.16 -5.31 9.82 30.62 0.30 -5.01 16 25 C -0.19 -6.43 8.71 30.62 0.27 -6.16 16 26 H 0.07 1.68 8.09 -2.38 -0.02 1.66 16 27 H 0.07 1.74 8.11 -2.39 -0.02 1.72 16 28 H 0.07 1.77 6.87 -2.39 -0.02 1.76 16 29 H 0.04 1.72 3.97 -14.68 -0.06 1.66 16 30 H 0.09 3.12 7.83 -2.39 -0.02 3.10 16 31 H 0.07 2.85 6.46 -2.38 -0.02 2.83 16 32 H 0.05 1.86 7.78 -2.38 -0.02 1.84 16 33 H 0.04 1.89 7.73 -2.39 -0.02 1.87 16 34 H 0.10 4.86 4.30 -2.65 -0.01 4.85 16 35 H 0.15 3.90 5.96 -2.91 -0.02 3.88 16 36 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 38 H 0.13 5.30 4.07 -2.91 -0.01 5.29 16 39 H 0.27 13.85 8.32 -92.71 -0.77 13.07 16 40 H 0.12 4.66 7.50 -2.39 -0.02 4.64 16 41 H 0.09 3.37 6.47 -2.39 -0.02 3.35 16 42 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.08 3.14 7.32 -2.39 -0.02 3.12 16 Total: -1.00 -63.33 331.40 3.53 -59.80 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: 0.97 Total: 38.46 kcal Atomic # 6 Polarization: -85.82 SS G_CDS: 4.22 Total: -81.60 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -0.61 Total: -86.49 kcal Atomic # 8 Polarization: -106.17 SS G_CDS: -2.91 Total: -109.08 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 134.78 SS G_CDS: -0.16 Total: 134.61 kcal Total: -63.33 3.53 -59.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356132899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.433 kcal (2) G-P(sol) polarization free energy of solvation -63.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds