Wall clock time and date at job start Tue Mar 31 2020 13:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 O 1.42896 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47317 * 240.00180 * 2 1 3 6 6 N 1.46505 * 109.47212 * 59.99649 * 5 2 1 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 2 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47156 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00151 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99845 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00054 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00100 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99948 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47220 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47248 * 120.00156 * 15 13 11 18 18 H 1.48501 * 109.47068 * 240.00173 * 15 13 11 19 19 C 1.52992 * 109.46961 * 119.99719 * 2 1 3 20 20 C 1.50698 * 109.47592 * 300.00224 * 19 2 1 21 21 C 1.38234 * 119.99987 * 269.72960 * 20 19 2 22 22 C 1.38244 * 119.99665 * 179.76257 * 21 20 19 23 23 C 1.38232 * 119.99827 * 0.50888 * 22 21 20 24 24 C 1.38236 * 120.00310 * 359.74530 * 23 22 21 25 25 C 1.38228 * 119.99972 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 30 30 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 31 31 H 0.96698 * 114.00134 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 5 2 1 33 33 H 1.09001 * 109.46832 * 179.97438 * 5 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 6 5 2 35 35 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 36 36 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 37 37 H 0.96999 * 120.00126 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47103 * 60.00608 * 19 2 1 39 39 H 1.09001 * 109.47066 * 180.02562 * 19 2 1 40 40 H 1.07994 * 120.00394 * 359.97438 * 21 20 19 41 41 H 1.08005 * 119.99984 * 180.22963 * 22 21 20 42 42 H 1.08007 * 119.99862 * 179.72473 * 23 22 21 43 43 H 1.07998 * 119.99875 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00253 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4688 1.4427 0.0006 5 6 2.0400 -0.7212 -1.2492 6 7 1.5516 -0.0306 -2.4454 7 6 1.8777 -0.4908 -3.6695 8 8 2.5751 -1.4768 -3.7808 9 6 1.3749 0.2193 -4.8999 10 16 1.9784 -0.6339 -6.3778 11 6 1.2624 0.3787 -7.6295 12 1 0.6589 1.2312 -7.3548 13 6 1.4730 0.0801 -8.9685 14 7 2.2073 -0.9598 -9.3033 15 14 0.7134 1.1531 -10.2955 16 1 -0.0626 2.2493 -9.6617 17 1 1.7889 1.7316 -11.1402 18 1 -0.1908 0.3311 -11.1393 19 6 2.0399 -0.7212 1.2492 20 6 1.5376 -0.0108 2.4797 21 6 2.2873 1.0024 3.0473 22 6 1.8241 1.6573 4.1732 23 6 0.6163 1.2919 4.7375 24 6 -0.1309 0.2751 4.1729 25 6 0.3294 -0.3759 3.0438 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6765 1.9563 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 3.8621 2.3261 0.0010 32 1 1.6768 -1.7489 -1.2492 33 1 3.1300 -0.7207 -1.2494 34 1 0.9943 0.7582 -2.3564 35 1 0.2849 0.2184 -4.9000 36 1 1.7374 1.2472 -4.8999 37 1 2.3549 -1.1683 -10.2391 38 1 1.6767 -1.7489 1.2492 39 1 3.1299 -0.7208 1.2495 40 1 3.2332 1.2847 2.6093 41 1 2.4081 2.4515 4.6146 42 1 0.2565 1.8005 5.6197 43 1 -1.0744 -0.0107 4.6141 44 1 -0.2541 -1.1705 2.6029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360271889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:46 Heat of formation + Delta-G solvation = -76.081850 kcal Electronic energy + Delta-G solvation = -24478.536097 eV Core-core repulsion = 20907.469467 eV Total energy + Delta-G solvation = -3571.066630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38309 -39.13312 -37.82998 -35.58207 -33.68503 -32.41462 -31.33281 -31.17957 -29.29071 -27.34966 -26.29920 -25.71852 -25.24614 -22.76772 -21.76675 -20.27527 -19.26805 -17.83167 -17.58902 -16.97422 -16.44648 -16.02896 -15.56431 -15.40148 -15.23137 -14.96657 -14.79419 -14.45944 -13.94921 -13.86148 -13.53096 -13.38866 -13.04238 -13.02332 -12.70845 -12.56882 -12.49439 -12.40181 -11.79402 -11.70557 -11.34687 -11.19122 -11.06459 -11.00603 -10.98700 -10.76828 -10.69724 -10.18801 -9.78668 -9.35444 -9.18028 -9.06385 -8.93302 -8.76841 -8.20380 -6.47674 -6.20335 -3.90426 1.05721 1.10661 3.07723 3.17940 3.22233 3.29117 3.33879 3.47882 3.76809 3.99233 4.21679 4.34979 4.46021 4.62774 4.65643 4.71044 4.81144 4.91746 5.11428 5.13537 5.14739 5.20249 5.24084 5.27465 5.30330 5.45943 5.53919 5.60902 5.63888 5.76843 5.77302 5.81431 5.89302 5.91779 5.95137 6.12500 6.16120 6.18475 6.22675 6.39765 6.69140 6.72959 7.40389 7.61081 7.77123 8.36761 8.69177 9.24980 10.87136 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.002148 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.945403 B =13031.537472 C =13113.231390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C 0.083 3.917 4 O -0.564 6.564 5 C 0.136 3.864 6 N -0.735 5.735 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.069 4.069 20 C -0.072 4.072 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.116 4.116 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.378 0.622 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.394 0.606 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 6.862 28.731 29.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.062 4.062 3 C 0.005 3.995 4 O -0.369 6.369 5 C 0.012 3.988 6 N -0.391 5.391 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.106 4.106 20 C -0.072 4.072 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.134 4.134 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.224 0.776 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.228 0.772 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.938 4.439 28.395 28.890 hybrid contribution -1.576 2.903 -0.634 3.364 sum -4.514 7.342 27.761 29.068 Atomic orbital electron populations 1.21955 0.93304 1.02996 1.02282 1.20749 0.95931 0.94695 0.94859 1.22234 0.81539 0.95999 0.99741 1.86480 1.19251 1.33543 1.97598 1.21226 0.99972 0.95377 0.82271 1.46012 1.55111 1.32505 1.05431 1.20255 0.79818 0.84411 0.83800 1.90701 1.36518 1.25662 1.86314 1.23526 1.04281 1.03829 0.98723 1.85413 1.67595 1.38435 0.91919 1.22910 1.37129 1.15595 0.92621 0.90930 1.25000 0.95114 0.95602 0.97974 1.70032 1.36429 1.25762 1.18043 0.86113 0.78850 0.79813 0.80676 1.19656 1.20579 1.20584 1.20565 1.01997 0.98225 0.89850 1.19844 0.94589 0.96444 0.96367 1.21180 1.00089 0.95982 0.95855 1.21166 0.96451 1.00041 0.96436 1.21135 0.95339 0.97919 1.00146 1.21139 0.99875 0.96620 0.96343 1.21120 0.95955 1.00214 0.96107 0.91492 0.91716 0.92252 0.93764 0.93088 0.77566 0.91720 0.90613 0.77181 0.89369 0.89400 0.92258 0.90608 0.89588 0.85645 0.86324 0.86422 0.86271 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 7.71 37.16 0.29 -0.88 16 2 C -0.06 -0.55 0.39 -154.51 -0.06 -0.61 16 3 C 0.08 0.68 5.16 37.16 0.19 0.87 16 4 O -0.56 -4.98 11.91 -35.23 -0.42 -5.40 16 5 C 0.14 1.68 4.42 -4.04 -0.02 1.66 16 6 N -0.74 -10.11 4.96 -60.29 -0.30 -10.41 16 7 C 0.53 10.18 7.85 -10.99 -0.09 10.09 16 8 O -0.52 -12.12 15.86 5.56 0.09 -12.03 16 9 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 15 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.07 -0.58 4.31 -27.89 -0.12 -0.70 16 20 C -0.07 -0.58 4.00 -104.62 -0.42 -1.00 16 21 C -0.11 -0.89 7.90 -39.58 -0.31 -1.20 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 23 C -0.13 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.12 -0.87 10.05 -39.59 -0.40 -1.26 16 25 C -0.12 -0.88 7.88 -39.58 -0.31 -1.19 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.47 6.17 -51.93 -0.32 0.15 16 28 H 0.06 0.46 6.86 -51.93 -0.36 0.11 16 29 H 0.04 0.36 6.86 -51.93 -0.36 0.01 16 30 H 0.05 0.39 6.19 -51.93 -0.32 0.07 16 31 H 0.38 1.95 9.12 45.56 0.42 2.36 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.09 7.68 -51.93 -0.40 0.69 16 34 H 0.39 4.33 6.16 -40.82 -0.25 4.08 16 35 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 38 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.09 0.81 7.62 -51.93 -0.40 0.41 16 40 H 0.13 0.93 7.63 -52.49 -0.40 0.53 16 41 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.79 8.03 -52.49 -0.42 0.37 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -35.59 371.58 -8.89 -44.48 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.73 Total: 3.51 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.62 Total: -12.76 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.43 Total: -36.02 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.33 Total: -17.43 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.59 -8.89 -44.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360271889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.604 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds