Wall clock time and date at job start Tue Mar 31 2020 13:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 O 1.42896 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47317 * 240.00180 * 2 1 3 6 6 N 1.46505 * 109.47212 * 59.99649 * 5 2 1 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 2 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47156 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00151 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99845 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00054 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00100 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99948 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47220 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47248 * 120.00156 * 15 13 11 18 18 H 1.48501 * 109.47068 * 240.00173 * 15 13 11 19 19 C 1.52992 * 109.46961 * 119.99719 * 2 1 3 20 20 C 1.50698 * 109.47592 * 300.00224 * 19 2 1 21 21 C 1.38234 * 119.99987 * 269.72960 * 20 19 2 22 22 C 1.38244 * 119.99665 * 179.76257 * 21 20 19 23 23 C 1.38232 * 119.99827 * 0.50888 * 22 21 20 24 24 C 1.38236 * 120.00310 * 359.74530 * 23 22 21 25 25 C 1.38228 * 119.99972 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 30 30 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 31 31 H 0.96698 * 114.00134 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 5 2 1 33 33 H 1.09001 * 109.46832 * 179.97438 * 5 2 1 34 34 H 0.96996 * 119.99606 * 0.02562 * 6 5 2 35 35 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 36 36 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 37 37 H 0.96999 * 120.00126 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47103 * 60.00608 * 19 2 1 39 39 H 1.09001 * 109.47066 * 180.02562 * 19 2 1 40 40 H 1.07994 * 120.00394 * 359.97438 * 21 20 19 41 41 H 1.08005 * 119.99984 * 180.22963 * 22 21 20 42 42 H 1.08007 * 119.99862 * 179.72473 * 23 22 21 43 43 H 1.07998 * 119.99875 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00253 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4688 1.4427 0.0006 5 6 2.0400 -0.7212 -1.2492 6 7 1.5516 -0.0306 -2.4454 7 6 1.8777 -0.4908 -3.6695 8 8 2.5751 -1.4768 -3.7808 9 6 1.3749 0.2193 -4.8999 10 16 1.9784 -0.6339 -6.3778 11 6 1.2624 0.3787 -7.6295 12 1 0.6589 1.2312 -7.3548 13 6 1.4730 0.0801 -8.9685 14 7 2.2073 -0.9598 -9.3033 15 14 0.7134 1.1531 -10.2955 16 1 -0.0626 2.2493 -9.6617 17 1 1.7889 1.7316 -11.1402 18 1 -0.1908 0.3311 -11.1393 19 6 2.0399 -0.7212 1.2492 20 6 1.5376 -0.0108 2.4797 21 6 2.2873 1.0024 3.0473 22 6 1.8241 1.6573 4.1732 23 6 0.6163 1.2919 4.7375 24 6 -0.1309 0.2751 4.1729 25 6 0.3294 -0.3759 3.0438 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6765 1.9563 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 3.8621 2.3261 0.0010 32 1 1.6768 -1.7489 -1.2492 33 1 3.1300 -0.7207 -1.2494 34 1 0.9943 0.7582 -2.3564 35 1 0.2849 0.2184 -4.9000 36 1 1.7374 1.2472 -4.8999 37 1 2.3549 -1.1683 -10.2391 38 1 1.6767 -1.7489 1.2492 39 1 3.1299 -0.7208 1.2495 40 1 3.2332 1.2847 2.6093 41 1 2.4081 2.4515 4.6146 42 1 0.2565 1.8005 5.6197 43 1 -1.0744 -0.0107 4.6141 44 1 -0.2541 -1.1705 2.6029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360271889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:46 Heat of formation + Delta-G solvation = -100.742779 kcal Electronic energy + Delta-G solvation = -24479.605475 eV Core-core repulsion = 20907.469467 eV Total energy + Delta-G solvation = -3572.136008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.21481 -40.28835 -38.69150 -36.39236 -34.81241 -34.57869 -32.16599 -31.73511 -30.71943 -28.06645 -27.69511 -26.95336 -26.47157 -23.29815 -22.46444 -21.65149 -20.20529 -19.66435 -18.26542 -17.91517 -17.56411 -17.13403 -16.88068 -16.69935 -16.15168 -16.09045 -15.91084 -15.65922 -15.37234 -14.68148 -14.61531 -14.43024 -14.19031 -13.98935 -13.72123 -13.56978 -13.29216 -13.15719 -13.10382 -13.00711 -12.90187 -12.61002 -12.38902 -12.04772 -11.78787 -11.71563 -11.64142 -11.44480 -11.15815 -10.95794 -10.84633 -10.26784 -10.08069 -9.71777 -9.50620 -8.66675 -8.34560 -6.12685 0.50447 0.56883 1.27299 1.41645 1.47497 1.58575 1.63204 2.26125 2.30749 2.93379 2.99521 3.31513 3.34791 3.60053 3.76011 3.97049 3.98975 4.10183 4.18855 4.25752 4.29325 4.35833 4.42044 4.48294 4.49826 4.63944 4.66903 4.71679 4.75293 4.84894 4.90605 5.01137 5.02604 5.15071 5.25070 5.26447 5.36901 5.42183 5.45016 5.65480 5.70366 5.82503 6.19592 6.20260 6.49169 6.92941 7.06660 7.25221 8.74942 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.002148 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.945403 B =13031.537472 C =13113.231390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.084 3.916 4 O -0.582 6.582 5 C 0.138 3.862 6 N -0.707 5.707 7 C 0.533 3.467 8 O -0.567 6.567 9 C -0.128 4.128 10 S -0.153 6.153 11 C -0.544 4.544 12 H 0.083 0.917 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.256 1.256 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.064 4.064 20 C -0.080 4.080 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.128 4.128 25 C -0.123 4.123 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.393 0.607 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.411 0.589 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.271 0.729 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 9.125 30.070 31.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.053 4.053 3 C 0.006 3.994 4 O -0.389 6.389 5 C 0.014 3.986 6 N -0.361 5.361 7 C 0.318 3.682 8 O -0.446 6.446 9 C -0.280 4.280 10 S 0.075 5.925 11 C -0.692 4.692 12 H 0.101 0.899 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.180 1.180 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.102 4.102 20 C -0.080 4.080 21 C -0.140 4.140 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.146 4.146 25 C -0.141 4.141 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.242 0.758 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.249 0.751 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.846 6.750 29.786 30.924 hybrid contribution -0.969 2.209 -0.872 2.565 sum -5.815 8.959 28.914 30.824 Atomic orbital electron populations 1.21947 0.92105 1.03308 1.02933 1.20680 0.96737 0.94863 0.92989 1.22241 0.81399 0.95334 1.00398 1.86455 1.19650 1.35180 1.97636 1.21284 0.98800 0.95557 0.82980 1.45737 1.53813 1.32427 1.04163 1.20068 0.79440 0.83770 0.84877 1.90690 1.38979 1.27875 1.87036 1.23363 1.05287 1.03711 0.95598 1.85617 1.69181 1.41233 0.96514 1.23231 1.37179 1.15725 0.93065 0.89869 1.26157 0.95419 0.97028 1.00744 1.70195 1.38016 1.27839 1.18769 0.84882 0.77995 0.77934 0.76979 1.17964 1.19948 1.19941 1.20479 1.01168 0.98466 0.90080 1.19794 0.95089 0.96807 0.96342 1.21260 1.00187 0.96230 0.96343 1.21401 0.96813 1.00343 0.96212 1.21428 0.95173 0.97854 1.00629 1.21405 1.00589 0.96479 0.96143 1.21272 0.95874 1.00542 0.96433 0.91423 0.90700 0.91910 0.93422 0.91967 0.75809 0.92441 0.92713 0.75087 0.87148 0.87339 0.92008 0.90425 0.90908 0.85725 0.84861 0.84659 0.84631 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 7.71 71.98 0.55 -1.43 16 2 C -0.05 -0.86 0.39 -52.18 -0.02 -0.88 16 3 C 0.08 1.24 5.16 71.98 0.37 1.61 16 4 O -0.58 -9.69 11.91 -148.98 -1.77 -11.46 16 5 C 0.14 3.35 4.42 86.38 0.38 3.73 16 6 N -0.71 -18.57 4.96 -463.06 -2.30 -20.87 16 7 C 0.53 20.25 7.85 87.66 0.69 20.94 16 8 O -0.57 -27.29 15.86 -3.03 -0.05 -27.33 16 9 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 10 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 11 C -0.54 -31.23 9.50 67.95 0.65 -30.58 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.64 5.49 84.86 0.47 1.10 16 14 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 15 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 16 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 19 C -0.06 -1.04 4.31 29.84 0.13 -0.91 16 20 C -0.08 -1.19 4.00 -19.86 -0.08 -1.27 16 21 C -0.12 -1.76 7.90 22.27 0.18 -1.58 16 22 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 23 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 24 C -0.13 -1.54 10.05 22.27 0.22 -1.32 16 25 C -0.12 -1.65 7.88 22.27 0.18 -1.47 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.91 6.17 -2.39 -0.01 0.89 16 28 H 0.06 0.81 6.86 -2.39 -0.02 0.79 16 29 H 0.05 0.66 6.86 -2.39 -0.02 0.65 16 30 H 0.06 0.81 6.19 -2.39 -0.01 0.79 16 31 H 0.39 3.57 9.12 -74.06 -0.68 2.89 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.61 7.68 -2.39 -0.02 1.59 16 34 H 0.41 8.03 6.16 -92.71 -0.57 7.46 16 35 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 36 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 39 H 0.07 1.37 7.62 -2.39 -0.02 1.35 16 40 H 0.12 1.75 7.63 -2.91 -0.02 1.72 16 41 H 0.13 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 43 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 44 H 0.13 1.45 8.03 -2.91 -0.02 1.42 16 Total: -1.00 -78.84 371.58 1.40 -77.44 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.23 Total: 21.84 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.60 Total: -19.50 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.01 Total: -76.99 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.82 Total: -38.80 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -78.84 1.40 -77.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360271889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.307 kcal (2) G-P(sol) polarization free energy of solvation -78.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds