Wall clock time and date at job start Tue Mar 31 2020 14:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47327 * 2 1 4 4 C 1.53004 * 109.46948 * 240.00266 * 2 1 3 5 5 C 1.50697 * 109.47319 * 59.99690 * 4 2 1 6 6 H 1.08004 * 119.99779 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00375 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00272 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99623 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47673 * 90.00142 * 9 7 5 11 11 H 1.48501 * 109.47065 * 209.99978 * 9 7 5 12 12 H 1.48503 * 109.47508 * 329.99545 * 9 7 5 13 13 C 1.53004 * 109.47289 * 120.00217 * 2 1 3 14 14 N 1.46497 * 109.46930 * 300.00221 * 13 2 1 15 15 C 1.34779 * 119.99545 * 180.02562 * 14 13 2 16 16 O 1.21588 * 120.00349 * 359.97438 * 15 14 13 17 17 C 1.47523 * 119.99639 * 179.97438 * 15 14 13 18 18 C 1.39988 * 120.59826 * 359.97438 * 17 15 14 19 19 C 1.38345 * 118.34875 * 180.02562 * 18 17 15 20 20 N 1.48012 * 120.26686 * 179.97438 * 19 18 17 21 21 O 1.21795 * 120.00571 * 0.02562 * 20 19 18 22 22 O 1.21804 * 120.00055 * 179.97438 * 20 19 18 23 23 C 1.38348 * 119.45773 * 359.97438 * 19 18 17 24 24 N 1.31886 * 121.18794 * 359.72430 * 23 19 18 25 25 C 1.32241 * 121.79684 * 0.57296 * 24 23 19 26 26 O 1.35422 * 119.79870 * 179.70770 * 25 24 23 27 27 H 1.08996 * 109.46881 * 299.99515 * 1 2 3 28 28 H 1.08997 * 109.47447 * 60.00180 * 1 2 3 29 29 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47473 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47083 * 300.00488 * 3 2 1 32 32 H 1.09003 * 109.46824 * 59.99709 * 3 2 1 33 33 H 1.08997 * 109.47325 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46895 * 299.99994 * 4 2 1 35 35 H 0.97003 * 120.00298 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47282 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.46685 * 59.99978 * 13 2 1 38 38 H 0.97002 * 120.00232 * 359.97438 * 14 13 2 39 39 H 1.08003 * 120.82715 * 0.02562 * 18 17 15 40 40 H 1.08003 * 119.41012 * 180.02562 * 23 19 18 41 41 H 0.96700 * 114.00112 * 269.72522 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9450 -2.0002 -3.9035 10 1 2.0866 -3.2111 -3.9495 11 1 3.7374 -1.9073 -5.1560 12 1 3.8651 -2.0897 -2.7413 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8778 -0.4910 3.6695 16 8 2.5769 -1.4796 3.7810 17 6 1.3865 0.2047 4.8740 18 6 0.5813 1.3442 4.7602 19 6 0.1470 1.9602 5.9202 20 7 -0.7057 3.1679 5.8493 21 8 -1.0281 3.6232 4.7666 22 8 -1.0857 3.7061 6.8738 23 6 0.5161 1.4380 7.1471 24 7 1.2708 0.3597 7.2313 25 6 1.7174 -0.2640 6.1541 26 8 2.4947 -1.3649 6.2876 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7217 -1.2492 34 1 1.6766 -1.7489 -1.2493 35 1 1.6680 -0.1922 -5.6868 36 1 3.1301 -0.7217 1.2490 37 1 1.6767 -1.7490 1.2491 38 1 0.9943 0.7581 2.3564 39 1 0.3061 1.7327 3.7908 40 1 0.1763 1.9193 8.0522 41 1 3.4421 -1.1751 6.3261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360411054.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:51 Heat of formation + Delta-G solvation = -44.163478 kcal Electronic energy + Delta-G solvation = -27126.123545 eV Core-core repulsion = 23010.147785 eV Total energy + Delta-G solvation = -4115.975760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.76671 -41.54192 -39.64859 -37.99277 -37.31748 -37.03331 -34.39154 -33.51175 -32.33385 -31.87352 -27.98865 -27.12717 -26.72481 -26.69313 -25.37962 -23.70735 -22.55985 -21.13041 -20.02731 -19.73992 -19.29442 -18.44658 -18.04167 -17.67962 -17.28791 -16.88928 -16.78723 -15.84275 -15.47707 -15.02368 -14.44037 -14.31283 -14.01034 -13.93463 -13.78855 -13.55613 -12.86439 -12.63274 -12.52390 -12.35395 -12.04381 -11.89391 -11.56429 -11.37972 -11.26945 -11.19261 -11.10280 -10.88737 -10.71987 -10.62843 -10.27914 -10.17337 -10.09847 -9.82872 -9.62403 -9.15450 -9.09019 -8.60075 -6.10370 -4.08481 -0.93862 -0.31214 0.62291 0.74479 2.09911 2.51780 2.74629 2.92811 3.26167 3.34739 3.37097 3.40149 3.53960 3.62809 4.02695 4.39371 4.40101 4.52707 4.72622 5.05174 5.19470 5.20641 5.36425 5.47750 5.78977 5.92282 5.93842 5.98731 6.15022 6.17328 6.47221 6.47786 6.51015 6.74934 6.81833 6.90787 6.94145 7.08236 7.12909 7.21937 7.25171 7.70552 7.85427 8.45452 8.93219 9.51764 11.02236 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.002969 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.426693 B = 9429.481601 C =10817.986000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.130 4.130 4 C -0.001 4.001 5 C -0.514 4.514 6 H 0.079 0.921 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.125 3.875 14 N -0.710 5.710 15 C 0.558 3.442 16 O -0.513 6.513 17 C -0.197 4.197 18 C 0.034 3.966 19 C -0.121 4.121 20 N 0.034 4.966 21 O -0.145 6.145 22 O -0.149 6.149 23 C 0.223 3.777 24 N -0.492 5.492 25 C 0.421 3.579 26 O -0.447 6.447 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.173 0.827 40 H 0.196 0.804 41 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 3.230 23.769 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 C -0.187 4.187 4 C -0.039 4.039 5 C -0.552 4.552 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.003 3.997 14 N -0.362 5.362 15 C 0.341 3.659 16 O -0.389 6.389 17 C -0.205 4.205 18 C 0.008 3.992 19 C -0.207 4.207 20 N 0.556 4.444 21 O -0.363 6.363 22 O -0.365 6.365 23 C 0.062 3.938 24 N -0.211 5.211 25 C 0.242 3.758 26 O -0.257 6.257 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.190 0.810 40 H 0.212 0.788 41 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 0.684 1.193 24.413 24.452 hybrid contribution 0.244 0.342 -1.114 1.191 sum 0.928 1.535 23.299 23.367 Atomic orbital electron populations 1.21802 0.94625 1.01429 1.00942 1.20732 0.95963 0.95995 0.93780 1.21794 1.00541 0.95455 1.00945 1.19584 0.96308 0.95506 0.92464 1.21054 1.32071 1.13465 0.88565 0.90330 1.24994 0.95659 0.96725 0.95981 1.69894 1.45735 1.40505 0.97930 0.86864 0.81303 0.83915 0.77690 1.20353 1.21465 1.19035 1.21791 0.99228 0.96229 0.82455 1.46133 1.52659 1.31843 1.05606 1.17467 0.81541 0.84367 0.82489 1.90862 1.37123 1.24743 1.86174 1.21385 1.04787 0.97923 0.96359 1.21706 0.87846 0.90261 0.99410 1.22153 1.06736 0.94100 0.97671 1.43256 0.99448 1.00862 1.00870 1.94619 1.59404 1.65831 1.16407 1.94572 1.56823 1.60388 1.24748 1.22846 0.86426 0.88004 0.96529 1.67839 1.13225 1.07839 1.32215 1.19592 0.87541 0.82656 0.86048 1.84687 1.22348 1.24031 1.94626 0.95174 0.90534 0.93234 0.93253 0.90536 0.95179 0.96306 0.96743 0.92712 0.91179 0.91172 0.76462 0.80960 0.78778 0.71655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 2 C -0.06 -1.07 0.54 -154.51 -0.08 -1.15 16 3 C -0.13 -2.04 8.05 37.15 0.30 -1.75 16 4 C 0.00 -0.02 3.11 -27.88 -0.09 -0.10 16 5 C -0.51 -13.20 8.20 -34.44 -0.28 -13.49 16 6 H 0.08 2.14 5.92 -52.48 -0.31 1.83 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 9 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 13 C 0.13 1.83 4.56 -4.04 -0.02 1.81 16 14 N -0.71 -8.31 4.91 -61.35 -0.30 -8.61 16 15 C 0.56 6.66 7.77 -12.47 -0.10 6.56 16 16 O -0.51 -7.66 15.19 -16.48 -0.25 -7.91 16 17 C -0.20 -1.82 5.90 -104.69 -0.62 -2.44 16 18 C 0.03 0.27 9.13 -38.89 -0.36 -0.09 16 19 C -0.12 -0.96 6.87 -79.87 -0.55 -1.51 16 20 N 0.03 0.33 4.45 34.00 0.15 0.49 16 21 O -0.15 -1.61 18.51 -29.46 -0.55 -2.15 16 22 O -0.15 -1.49 18.46 -29.46 -0.54 -2.03 16 23 C 0.22 1.53 10.70 -17.49 -0.19 1.34 16 24 N -0.49 -4.10 10.37 -12.98 -0.13 -4.24 16 25 C 0.42 3.83 7.77 -16.61 -0.13 3.70 16 26 O -0.45 -4.07 11.66 -39.73 -0.46 -4.53 16 27 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 28 H 0.08 1.40 6.62 -51.93 -0.34 1.06 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.39 6.62 -51.93 -0.34 1.05 16 32 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 34 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.40 3.88 4.26 -40.82 -0.17 3.71 16 39 H 0.17 1.13 6.14 -52.48 -0.32 0.80 16 40 H 0.20 0.82 7.60 -52.48 -0.40 0.42 16 41 H 0.42 1.96 9.06 45.56 0.41 2.37 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -32.18 347.44 -6.47 -38.65 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -3.82 Total: 1.84 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.90 Total: -7.13 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.49 Total: -38.14 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -1.80 Total: -16.63 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.18 -6.47 -38.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360411054.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.515 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds