Wall clock time and date at job start Tue Mar 31 2020 14:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47327 * 2 1 4 4 C 1.53004 * 109.46948 * 240.00266 * 2 1 3 5 5 C 1.50697 * 109.47319 * 59.99690 * 4 2 1 6 6 H 1.08004 * 119.99779 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00375 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00272 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99623 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47673 * 90.00142 * 9 7 5 11 11 H 1.48501 * 109.47065 * 209.99978 * 9 7 5 12 12 H 1.48503 * 109.47508 * 329.99545 * 9 7 5 13 13 C 1.53004 * 109.47289 * 120.00217 * 2 1 3 14 14 N 1.46497 * 109.46930 * 300.00221 * 13 2 1 15 15 C 1.34779 * 119.99545 * 180.02562 * 14 13 2 16 16 O 1.21588 * 120.00349 * 359.97438 * 15 14 13 17 17 C 1.47523 * 119.99639 * 179.97438 * 15 14 13 18 18 C 1.39988 * 120.59826 * 359.97438 * 17 15 14 19 19 C 1.38345 * 118.34875 * 180.02562 * 18 17 15 20 20 N 1.48012 * 120.26686 * 179.97438 * 19 18 17 21 21 O 1.21795 * 120.00571 * 0.02562 * 20 19 18 22 22 O 1.21804 * 120.00055 * 179.97438 * 20 19 18 23 23 C 1.38348 * 119.45773 * 359.97438 * 19 18 17 24 24 N 1.31886 * 121.18794 * 359.72430 * 23 19 18 25 25 C 1.32241 * 121.79684 * 0.57296 * 24 23 19 26 26 O 1.35422 * 119.79870 * 179.70770 * 25 24 23 27 27 H 1.08996 * 109.46881 * 299.99515 * 1 2 3 28 28 H 1.08997 * 109.47447 * 60.00180 * 1 2 3 29 29 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47473 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47083 * 300.00488 * 3 2 1 32 32 H 1.09003 * 109.46824 * 59.99709 * 3 2 1 33 33 H 1.08997 * 109.47325 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46895 * 299.99994 * 4 2 1 35 35 H 0.97003 * 120.00298 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47282 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.46685 * 59.99978 * 13 2 1 38 38 H 0.97002 * 120.00232 * 359.97438 * 14 13 2 39 39 H 1.08003 * 120.82715 * 0.02562 * 18 17 15 40 40 H 1.08003 * 119.41012 * 180.02562 * 23 19 18 41 41 H 0.96700 * 114.00112 * 269.72522 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9450 -2.0002 -3.9035 10 1 2.0866 -3.2111 -3.9495 11 1 3.7374 -1.9073 -5.1560 12 1 3.8651 -2.0897 -2.7413 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8778 -0.4910 3.6695 16 8 2.5769 -1.4796 3.7810 17 6 1.3865 0.2047 4.8740 18 6 0.5813 1.3442 4.7602 19 6 0.1470 1.9602 5.9202 20 7 -0.7057 3.1679 5.8493 21 8 -1.0281 3.6232 4.7666 22 8 -1.0857 3.7061 6.8738 23 6 0.5161 1.4380 7.1471 24 7 1.2708 0.3597 7.2313 25 6 1.7174 -0.2640 6.1541 26 8 2.4947 -1.3649 6.2876 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7217 -1.2492 34 1 1.6766 -1.7489 -1.2493 35 1 1.6680 -0.1922 -5.6868 36 1 3.1301 -0.7217 1.2490 37 1 1.6767 -1.7490 1.2491 38 1 0.9943 0.7581 2.3564 39 1 0.3061 1.7327 3.7908 40 1 0.1763 1.9193 8.0522 41 1 3.4421 -1.1751 6.3261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360411054.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:50 Heat of formation + Delta-G solvation = -67.651966 kcal Electronic energy + Delta-G solvation = -27127.142082 eV Core-core repulsion = 23010.147785 eV Total energy + Delta-G solvation = -4116.994298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.46839 -42.26371 -40.61644 -38.83415 -38.42946 -37.77642 -35.46271 -34.62755 -33.86487 -32.72094 -29.76063 -28.01165 -28.00497 -27.65625 -26.18289 -24.73245 -23.93750 -22.11335 -20.87630 -20.39091 -20.03144 -19.65643 -18.90206 -18.73991 -18.36989 -18.16477 -17.51972 -16.82486 -16.49866 -16.17961 -15.74524 -15.39086 -15.23400 -15.00579 -14.84019 -14.50703 -14.21423 -14.16443 -13.90114 -13.27867 -12.94926 -12.85571 -12.80749 -12.64013 -12.63807 -12.33943 -12.31074 -12.17783 -11.86031 -11.78956 -11.67554 -11.53234 -11.29734 -10.98328 -10.90603 -10.84811 -10.70280 -10.19435 -8.21847 -6.22265 -1.60941 -0.96115 -0.09026 0.06207 1.36565 1.37322 1.39452 1.48619 1.75115 1.96663 2.16663 2.39330 2.81022 2.87504 2.99127 3.13937 3.37653 3.66647 3.87546 3.96788 4.03593 4.09528 4.16300 4.48932 4.60005 4.68376 4.75473 4.91954 4.98239 5.06512 5.08879 5.22196 5.30070 5.39586 5.41701 5.55827 5.68277 5.76589 5.90803 6.29336 6.32642 6.34591 6.38463 6.85429 6.93819 7.40706 8.93798 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.002969 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.426693 B = 9429.481601 C =10817.986000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.126 4.126 4 C -0.003 4.003 5 C -0.502 4.502 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.934 3.066 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.248 1.248 13 C 0.139 3.861 14 N -0.704 5.704 15 C 0.563 3.437 16 O -0.545 6.545 17 C -0.205 4.205 18 C 0.048 3.952 19 C -0.124 4.124 20 N 0.038 4.962 21 O -0.177 6.177 22 O -0.143 6.143 23 C 0.240 3.760 24 N -0.500 5.500 25 C 0.426 3.574 26 O -0.462 6.462 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.018 0.982 34 H 0.015 0.985 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.409 0.591 39 H 0.186 0.814 40 H 0.223 0.777 41 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.314 2.942 26.632 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.060 4.060 3 C -0.184 4.184 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.759 3.241 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.172 1.172 13 C 0.015 3.985 14 N -0.356 5.356 15 C 0.349 3.651 16 O -0.423 6.423 17 C -0.213 4.213 18 C 0.022 3.978 19 C -0.211 4.211 20 N 0.556 4.444 21 O -0.388 6.388 22 O -0.364 6.364 23 C 0.080 3.920 24 N -0.219 5.219 25 C 0.247 3.753 26 O -0.275 6.275 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.248 0.752 39 H 0.204 0.796 40 H 0.240 0.760 41 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 1.040 0.930 27.253 27.288 hybrid contribution 0.097 0.486 -1.864 1.929 sum 1.137 1.415 25.389 25.453 Atomic orbital electron populations 1.21743 0.94058 1.01383 1.01294 1.20581 0.96382 0.96207 0.92835 1.21732 1.00507 0.94825 1.01311 1.19561 0.96125 0.95497 0.92912 1.21386 1.30229 1.12292 0.90147 0.93029 1.25843 0.97482 0.99911 0.95914 1.70043 1.48163 1.42725 0.98468 0.85897 0.79866 0.80312 0.77978 1.19849 1.21747 1.17157 1.21405 0.98951 0.95712 0.82405 1.45916 1.52821 1.32038 1.04874 1.17680 0.80697 0.83844 0.82880 1.90851 1.38584 1.26231 1.86640 1.20997 1.06365 0.98735 0.95199 1.21793 0.86560 0.89284 1.00152 1.22126 1.07079 0.93665 0.98190 1.43418 0.99316 1.01088 1.00571 1.94628 1.60701 1.66797 1.16651 1.94560 1.56582 1.60570 1.24638 1.23316 0.84629 0.86964 0.97126 1.67958 1.13897 1.08399 1.31681 1.19681 0.87124 0.82325 0.86188 1.84637 1.23761 1.24468 1.94625 0.91414 0.93592 0.93475 0.93284 0.93637 0.91349 0.96378 0.96711 0.92914 0.91457 0.91822 0.75190 0.79646 0.76040 0.69729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 8.05 71.98 0.58 -3.33 16 2 C -0.06 -1.91 0.54 -52.18 -0.03 -1.94 16 3 C -0.13 -3.82 8.05 71.98 0.58 -3.24 16 4 C 0.00 -0.13 3.11 29.85 0.09 -0.04 16 5 C -0.50 -26.35 8.20 25.60 0.21 -26.14 16 6 H 0.05 2.93 5.92 -2.91 -0.02 2.91 16 7 C 0.00 0.26 5.47 84.66 0.46 0.72 16 8 N -0.95 -57.90 13.96 21.45 0.30 -57.60 16 9 Si 0.93 43.14 27.47 68.60 1.88 45.03 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 12 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 13 C 0.14 3.77 4.56 86.38 0.39 4.16 16 14 N -0.70 -14.59 4.91 -466.28 -2.29 -16.88 16 15 C 0.56 12.17 7.77 86.69 0.67 12.84 16 16 O -0.54 -15.34 15.19 16.82 0.26 -15.09 16 17 C -0.21 -3.27 5.90 -19.91 -0.12 -3.39 16 18 C 0.05 0.62 9.13 22.72 0.21 0.83 16 19 C -0.12 -1.62 6.87 36.43 0.25 -1.37 16 20 N 0.04 0.64 4.45 -46.34 -0.21 0.44 16 21 O -0.18 -3.62 18.51 18.89 0.35 -3.27 16 22 O -0.14 -2.51 18.46 18.88 0.35 -2.17 16 23 C 0.24 2.51 10.70 84.71 0.91 3.41 16 24 N -0.50 -6.91 10.37 -308.00 -3.19 -10.10 16 25 C 0.43 6.74 7.77 85.13 0.66 7.40 16 26 O -0.46 -7.57 11.66 -66.35 -0.77 -8.34 16 27 H 0.07 1.54 6.86 -2.39 -0.02 1.52 16 28 H 0.04 1.69 6.62 -2.39 -0.02 1.68 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.66 6.62 -2.39 -0.02 1.64 16 32 H 0.07 1.51 6.86 -2.39 -0.02 1.49 16 33 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 34 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.41 6.59 4.26 -92.71 -0.40 6.19 16 39 H 0.19 1.81 6.14 -2.91 -0.02 1.80 16 40 H 0.22 1.00 7.60 -2.91 -0.02 0.97 16 41 H 0.44 3.35 9.06 -74.06 -0.67 2.68 16 Total: -1.00 -70.81 347.44 1.54 -69.27 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -0.01 Total: 8.79 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.87 Total: -10.08 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -5.39 Total: -84.15 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: 0.18 Total: -28.86 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.03 kcal Total: -70.81 1.54 -69.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360411054.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.621 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds