Wall clock time and date at job start Tue Mar 31 2020 14:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47116 * 59.99479 * 9 7 5 11 11 H 1.48490 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46756 * 300.00079 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.34779 * 119.99872 * 180.02562 * 14 13 2 16 16 O 1.21582 * 120.00328 * 0.02562 * 15 14 13 17 17 C 1.47620 * 119.99709 * 180.02562 * 15 14 13 18 18 C 1.39557 * 120.50393 * 0.02562 * 17 15 14 19 19 N 1.31638 * 120.62750 * 180.02562 * 18 17 15 20 20 C 1.32431 * 121.80329 * 0.02562 * 19 18 17 21 21 O 1.35489 * 119.52910 * 179.97438 * 20 19 18 22 22 C 1.39129 * 120.94379 * 359.97438 * 20 19 18 23 23 N 1.48026 * 120.36174 * 180.02562 * 22 20 19 24 24 O 1.21799 * 119.99448 * 179.97438 * 23 22 20 25 25 O 1.21794 * 120.00320 * 0.02562 * 23 22 20 26 26 C 1.37990 * 119.26749 * 359.76571 * 22 20 19 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 35 35 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 37 37 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 38 38 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 39 39 H 1.07997 * 119.68253 * 0.02562 * 18 17 15 40 40 H 0.96700 * 114.00459 * 89.99680 * 21 20 19 41 41 H 1.08005 * 120.82331 * 180.25400 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 1.7440 1.7995 -5.2567 11 1 1.7436 -0.3007 -6.4697 12 1 -0.2361 0.3995 -5.2576 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8779 -0.4910 3.6695 16 8 2.5776 -1.4790 3.7810 17 6 1.3854 0.2047 4.8748 18 6 0.5812 1.3393 4.7589 19 7 0.1411 1.9618 5.8321 20 6 0.4391 1.5438 7.0529 21 8 -0.0384 2.2200 8.1254 22 6 1.2356 0.4202 7.2498 23 7 1.5602 -0.0361 8.6200 24 8 2.2578 -1.0209 8.7846 25 8 1.1291 0.5727 9.5828 26 6 1.7151 -0.2673 6.1536 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7490 -1.2493 35 1 2.8627 -1.8813 -4.7337 36 1 1.6767 -1.7490 1.2492 37 1 3.1301 -0.7209 1.2494 38 1 0.9939 0.7578 2.3565 39 1 0.3174 1.7102 3.7795 40 1 -0.8979 1.9056 8.4379 41 1 2.3321 -1.1451 6.2774 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360421187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:53 Heat of formation + Delta-G solvation = -72.490252 kcal Electronic energy + Delta-G solvation = -26703.712735 eV Core-core repulsion = 22586.508633 eV Total energy + Delta-G solvation = -4117.204101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.55484 -42.15861 -40.80633 -38.89473 -38.43962 -37.66473 -35.46174 -34.60002 -34.10767 -32.54104 -29.13468 -28.24634 -27.91970 -27.72044 -25.79422 -24.78672 -24.49750 -22.24540 -20.93571 -20.33348 -20.05703 -19.71963 -18.85399 -18.68531 -18.37411 -18.05735 -17.29318 -16.84506 -16.61715 -16.40441 -15.69233 -15.30997 -15.17808 -14.89326 -14.68935 -14.43935 -14.32106 -13.90249 -13.76168 -13.37834 -12.83209 -12.80467 -12.77147 -12.73412 -12.56268 -12.38528 -12.28996 -12.21375 -11.99478 -11.96363 -11.69023 -11.51166 -11.18136 -10.93333 -10.86557 -10.83687 -10.48669 -10.20411 -8.12513 -6.19683 -1.63329 -0.99287 -0.08255 0.01973 1.28802 1.44422 1.45418 1.52598 1.79368 1.81763 2.13733 2.45639 2.71782 2.97772 3.13699 3.22615 3.32494 3.53055 3.93573 4.00984 4.10491 4.23782 4.29406 4.48220 4.69765 4.73980 4.80707 4.99322 5.02340 5.07214 5.17226 5.30482 5.46503 5.56126 5.57051 5.60315 5.84074 5.86126 5.92734 6.24255 6.28495 6.32295 6.35619 6.95951 6.96183 7.48259 8.99591 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032550 B = 0.002279 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.003427 B =12283.559084 C =12944.642773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.065 4.065 3 C -0.126 4.126 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.955 3.045 10 H -0.267 1.267 11 H -0.295 1.295 12 H -0.266 1.266 13 C 0.140 3.860 14 N -0.693 5.693 15 C 0.565 3.435 16 O -0.569 6.569 17 C -0.192 4.192 18 C 0.232 3.768 19 N -0.491 5.491 20 C 0.426 3.574 21 O -0.459 6.459 22 C -0.136 4.136 23 N 0.037 4.963 24 O -0.198 6.198 25 O -0.120 6.120 26 C 0.062 3.938 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.076 0.924 33 H -0.013 1.013 34 H -0.013 1.013 35 H 0.258 0.742 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.415 0.585 39 H 0.224 0.776 40 H 0.441 0.559 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 9.314 21.149 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.065 4.065 3 C -0.183 4.183 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.192 1.192 11 H -0.221 1.221 12 H -0.191 1.191 13 C 0.016 3.984 14 N -0.346 5.346 15 C 0.351 3.649 16 O -0.448 6.448 17 C -0.199 4.199 18 C 0.074 3.926 19 N -0.211 5.211 20 C 0.244 3.756 21 O -0.273 6.273 22 C -0.224 4.224 23 N 0.555 4.445 24 O -0.403 6.403 25 O -0.346 6.346 26 C 0.035 3.965 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.005 0.995 34 H 0.006 0.994 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.255 0.745 39 H 0.240 0.760 40 H 0.309 0.691 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.540 9.714 20.343 24.107 hybrid contribution 0.263 -1.042 -0.688 1.276 sum -8.277 8.672 19.655 23.023 Atomic orbital electron populations 1.21744 0.93314 1.01217 1.02008 1.20719 0.96896 0.96335 0.92563 1.21747 1.00066 0.94520 1.01993 1.18989 0.94379 0.94299 0.92340 1.21579 1.30285 1.12071 0.91020 0.90773 1.25922 0.95760 0.95862 1.02675 1.70110 1.38794 1.25033 1.24060 0.85649 0.78979 0.78776 0.78528 1.19185 1.22067 1.19139 1.21356 0.98375 0.95677 0.82973 1.45796 1.52477 1.31979 1.04359 1.17831 0.80227 0.83603 0.83261 1.90856 1.39441 1.27591 1.86954 1.20825 1.05356 1.00769 0.92909 1.23911 0.83932 0.85989 0.98784 1.67921 1.24951 1.30910 0.97278 1.19157 0.86701 0.81971 0.87782 1.84705 1.43334 1.58692 1.40572 1.22376 1.14195 1.02454 0.83412 1.43372 0.98773 0.99656 1.02696 1.94621 1.36398 1.17022 1.92210 1.94547 1.53281 1.55166 1.31655 1.21582 0.89598 0.96388 0.88915 0.90488 0.92623 0.94312 0.94402 0.92609 0.90529 0.99511 0.99442 0.93280 0.92624 0.92751 0.74493 0.76020 0.69091 0.80909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 8.05 71.98 0.58 -2.88 16 2 C -0.06 -2.07 0.54 -52.18 -0.03 -2.10 16 3 C -0.13 -3.51 8.05 71.98 0.58 -2.93 16 4 C 0.04 1.76 4.04 29.85 0.12 1.88 16 5 C -0.51 -25.71 7.65 25.60 0.20 -25.51 16 6 H 0.07 3.44 5.68 -2.91 -0.02 3.42 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -55.27 13.29 21.45 0.28 -54.99 16 9 Si 0.95 41.86 29.54 68.60 2.03 43.89 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 13 C 0.14 4.08 4.56 86.38 0.39 4.48 16 14 N -0.69 -13.66 4.91 -466.18 -2.29 -15.95 16 15 C 0.56 12.40 7.77 86.72 0.67 13.07 16 16 O -0.57 -17.92 16.41 -3.97 -0.07 -17.99 16 17 C -0.19 -2.94 5.89 -19.99 -0.12 -3.05 16 18 C 0.23 2.23 10.71 85.04 0.91 3.14 16 19 N -0.49 -5.98 10.37 -307.83 -3.19 -9.18 16 20 C 0.43 5.86 7.73 84.82 0.66 6.52 16 21 O -0.46 -5.09 11.57 -66.78 -0.77 -5.86 16 22 C -0.14 -2.33 6.88 36.53 0.25 -2.08 16 23 N 0.04 0.78 4.45 -46.09 -0.21 0.58 16 24 O -0.20 -4.94 18.51 18.89 0.35 -4.59 16 25 O -0.12 -2.50 17.26 25.60 0.44 -2.06 16 26 C 0.06 1.08 9.20 22.70 0.21 1.28 16 27 H 0.08 1.35 6.86 -2.39 -0.02 1.33 16 28 H 0.05 1.72 6.62 -2.39 -0.02 1.70 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.73 6.62 -2.38 -0.02 1.72 16 32 H 0.08 1.37 6.86 -2.39 -0.02 1.35 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.42 4.95 4.22 -92.71 -0.39 4.56 16 39 H 0.22 0.39 6.41 -2.91 -0.02 0.37 16 40 H 0.44 0.48 9.06 -74.06 -0.67 -0.19 16 41 H 0.17 3.35 7.36 -2.91 -0.02 3.33 16 Total: -1.00 -73.18 351.00 1.51 -71.67 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 0.05 Total: 2.49 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 4.89 Total: -8.02 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -5.40 Total: -79.54 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.49 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -73.18 1.51 -71.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.823 kcal (2) G-P(sol) polarization free energy of solvation -73.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds