Wall clock time and date at job start Tue Mar 31 2020 14:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99655 * 2 1 4 4 C 1.53004 * 109.46749 * 125.00226 * 3 2 1 5 5 C 1.52992 * 109.47196 * 60.00328 * 4 3 2 6 6 C 1.53000 * 109.47181 * 300.00086 * 4 3 2 7 7 C 1.53002 * 109.47079 * 180.02562 * 4 3 2 8 8 N 1.46497 * 109.47353 * 180.02562 * 7 4 3 9 9 S 1.65592 * 120.00234 * 165.27272 * 8 7 4 10 10 O 1.42102 * 106.40415 * 178.26324 * 9 8 7 11 11 O 1.42101 * 106.40420 * 311.18901 * 9 8 7 12 12 C 1.76207 * 107.21768 * 64.72389 * 9 8 7 13 13 C 1.38628 * 119.74906 * 269.73007 * 12 9 8 14 14 C 1.37619 * 120.24617 * 179.72416 * 13 12 9 15 15 C 1.40714 * 119.74296 * 0.56454 * 14 13 12 16 16 C 1.41401 * 120.24708 * 179.68643 * 15 14 13 17 17 H 1.07991 * 120.00379 * 155.31343 * 16 15 14 18 18 C 1.39953 * 119.99582 * 335.31508 * 16 15 14 19 19 N 1.30824 * 119.99882 * 342.22578 * 18 16 15 20 20 Si 1.86793 * 119.99977 * 162.23016 * 18 16 15 21 21 H 1.48508 * 109.46836 * 94.66319 * 20 18 16 22 22 H 1.48493 * 109.47243 * 214.65952 * 20 18 16 23 23 H 1.48497 * 109.47328 * 334.66535 * 20 18 16 24 24 C 1.40717 * 119.51646 * 359.70995 * 15 14 13 25 25 C 1.37623 * 119.73914 * 359.97438 * 24 15 14 26 26 H 1.08003 * 120.00839 * 359.97438 * 1 2 3 27 27 H 1.08011 * 120.00066 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99984 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47250 * 5.00931 * 3 2 1 30 30 H 1.08995 * 109.47504 * 245.00623 * 3 2 1 31 31 H 1.09003 * 109.47554 * 179.97438 * 5 4 3 32 32 H 1.09009 * 109.46749 * 299.99856 * 5 4 3 33 33 H 1.08994 * 109.47541 * 59.99489 * 5 4 3 34 34 H 1.09010 * 109.46911 * 300.00059 * 6 4 3 35 35 H 1.08995 * 109.47153 * 60.00100 * 6 4 3 36 36 H 1.09002 * 109.47212 * 180.02562 * 6 4 3 37 37 H 1.09000 * 109.47344 * 59.99571 * 7 4 3 38 38 H 1.09002 * 109.46926 * 300.00055 * 7 4 3 39 39 H 0.97001 * 119.99805 * 344.99945 * 8 7 4 40 40 H 1.07994 * 119.87584 * 359.97438 * 13 12 9 41 41 H 1.07999 * 120.12963 * 180.27723 * 14 13 12 42 42 H 0.96998 * 119.99862 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.13314 * 179.97438 * 24 15 14 44 44 H 1.07995 * 119.87522 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 4.0245 0.1730 1.0558 6 6 2.2520 1.1961 2.4890 7 6 3.7995 2.6584 1.1821 8 7 4.7302 2.6849 2.3131 9 16 5.9383 3.8162 2.3649 10 8 6.6316 3.6073 3.5876 11 8 6.5748 3.7820 1.0949 12 6 5.1684 5.3960 2.4930 13 6 4.8457 6.0993 1.3428 14 6 4.2391 7.3314 1.4309 15 6 3.9574 7.8821 2.6948 16 6 3.3404 9.1502 2.7978 17 1 2.7727 9.4045 3.6805 18 6 3.4654 10.0758 1.7555 19 7 4.4090 9.9303 0.8611 20 14 2.2850 11.5191 1.6416 21 1 2.8877 12.7047 2.3022 22 1 2.0192 11.8297 0.2140 23 1 1.0099 11.1704 2.3181 24 6 4.2946 7.1618 3.8556 25 6 4.8948 5.9284 3.7435 26 1 -0.5402 0.9353 0.0004 27 1 -0.5401 -0.9354 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3584 2.1317 0.0897 30 1 2.6211 1.4028 -0.9314 31 1 4.7170 0.1931 1.8974 32 1 3.4795 -0.7710 1.0558 33 1 4.5822 0.2705 0.1245 34 1 1.5470 2.0227 2.5786 35 1 1.7071 0.2521 2.4890 36 1 2.9442 1.2164 3.3309 37 1 3.0943 3.4847 1.2719 38 1 4.3572 2.7564 0.2507 39 1 4.6363 2.0423 3.0336 40 1 5.0675 5.6769 0.3740 41 1 3.9844 7.8757 0.5335 42 1 4.4959 10.5720 0.1390 43 1 4.0833 7.5752 4.8307 44 1 5.1542 5.3735 4.6330 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380807478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:40 Heat of formation + Delta-G solvation = -80.526729 kcal Electronic energy + Delta-G solvation = -25291.630324 eV Core-core repulsion = 21720.370949 eV Total energy + Delta-G solvation = -3571.259375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.58924 -39.36486 -38.10361 -36.76793 -35.80557 -35.49654 -32.80680 -32.06094 -31.28710 -28.12859 -27.84542 -27.59724 -26.40790 -23.29869 -22.94595 -21.04600 -20.42148 -19.58876 -19.41696 -18.64763 -18.12515 -17.22080 -17.07962 -16.17679 -15.91176 -15.84573 -15.68769 -15.17843 -14.95256 -14.85109 -14.50733 -14.11818 -14.01635 -13.95937 -13.57593 -13.43252 -13.12530 -13.03076 -12.97200 -12.92262 -12.86083 -12.71793 -12.55680 -12.44976 -12.18948 -12.02281 -11.83024 -11.59592 -11.53855 -11.34296 -11.25887 -11.19944 -10.31029 -10.08090 -9.78027 -9.54297 -8.86929 -6.64694 -0.27871 0.49438 1.06061 1.35880 1.42023 1.50738 1.53012 2.11484 2.28439 2.55426 2.95280 3.53333 3.56764 3.76509 3.90690 3.99036 4.30603 4.32047 4.32885 4.38939 4.51778 4.58112 4.70927 4.85422 4.88037 4.92987 4.93068 4.95653 5.04721 5.09777 5.11915 5.12179 5.24730 5.24888 5.32289 5.45905 5.52358 5.53060 5.60070 5.76974 5.85874 5.93469 6.00236 6.15884 6.22599 6.49516 6.68781 6.81558 8.08459 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.003616 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.905392 B = 7741.615052 C = 9094.115315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.087 4.087 4 C -0.057 4.057 5 C -0.145 4.145 6 C -0.142 4.142 7 C 0.122 3.878 8 N -1.105 6.105 9 S 2.726 3.274 10 O -1.005 7.005 11 O -1.004 7.004 12 C -0.796 4.796 13 C -0.019 4.019 14 C -0.206 4.206 15 C 0.112 3.888 16 C -0.468 4.468 17 H 0.092 0.908 18 C 0.034 3.966 19 N -0.799 5.799 20 Si 0.992 3.008 21 H -0.260 1.260 22 H -0.263 1.263 23 H -0.253 1.253 24 C -0.258 4.258 25 C -0.002 4.002 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.422 0.578 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.298 0.702 43 H 0.110 0.890 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.834 -14.369 -1.875 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.166 4.166 3 C -0.125 4.125 4 C -0.059 4.059 5 C -0.203 4.203 6 C -0.199 4.199 7 C -0.004 4.004 8 N -0.867 5.867 9 S 2.821 3.179 10 O -0.995 6.995 11 O -0.994 6.994 12 C -0.888 4.888 13 C -0.039 4.039 14 C -0.227 4.227 15 C 0.109 3.891 16 C -0.495 4.495 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.422 5.422 20 Si 0.811 3.189 21 H -0.185 1.185 22 H -0.187 1.187 23 H -0.177 1.177 24 C -0.278 4.278 25 C -0.022 4.022 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.259 0.741 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.767 -14.336 -2.274 16.015 hybrid contribution -0.722 1.206 0.241 1.426 sum -7.488 -13.130 -2.033 15.251 Atomic orbital electron populations 1.23970 0.96049 1.02185 1.01567 1.22930 0.95924 0.98278 0.99419 1.20811 0.97719 0.96311 0.97683 1.20623 0.95130 0.93602 0.96511 1.21950 0.98528 0.97647 1.02145 1.21898 0.99822 1.02375 0.95834 1.21470 0.91899 0.99047 0.88000 1.55274 1.49898 1.48766 1.32762 1.00238 0.72869 0.73033 0.71729 1.93458 1.72337 1.86558 1.47163 1.93457 1.74128 1.87577 1.44247 1.29645 1.34893 1.25023 0.99269 1.20446 0.93348 0.94249 0.95870 1.21350 1.07390 0.96104 0.97833 1.18195 0.86463 0.92437 0.92036 1.20229 1.27439 0.97955 1.03834 0.89026 1.27028 0.95802 1.02552 0.93100 1.69863 1.25925 1.35241 1.11182 0.85038 0.78505 0.76184 0.79192 1.18463 1.18690 1.17651 1.21258 1.10564 0.98428 0.97553 1.20446 0.92094 0.94557 0.95057 0.88949 0.87594 0.86315 0.91425 0.90398 0.92602 0.90706 0.92575 0.92966 0.91130 0.92369 0.91945 0.90855 0.74081 0.86681 0.87183 0.89066 0.87173 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.86 14.32 67.78 0.97 -1.89 16 2 C -0.15 -2.17 7.65 25.65 0.20 -1.98 16 3 C -0.09 -1.50 4.73 29.85 0.14 -1.36 16 4 C -0.06 -1.07 0.56 -52.18 -0.03 -1.10 16 5 C -0.15 -2.47 8.05 71.98 0.58 -1.89 16 6 C -0.14 -2.51 8.06 71.98 0.58 -1.93 16 7 C 0.12 3.04 5.11 86.38 0.44 3.48 16 8 N -1.10 -30.17 5.33 -187.49 -1.00 -31.17 16 9 S 2.73 101.40 5.73 -56.49 -0.32 101.07 16 10 O -1.00 -41.17 17.26 -128.00 -2.21 -43.38 16 11 O -1.00 -42.06 16.73 -128.00 -2.14 -44.20 16 12 C -0.80 -34.65 5.96 22.46 0.13 -34.52 16 13 C -0.02 -0.89 9.49 22.22 0.21 -0.68 16 14 C -0.21 -10.57 8.70 22.73 0.20 -10.37 16 15 C 0.11 5.82 5.57 -21.29 -0.12 5.70 16 16 C -0.47 -23.41 9.05 23.46 0.21 -23.20 16 17 H 0.09 4.31 7.91 -2.92 -0.02 4.29 16 18 C 0.03 1.60 5.14 85.26 0.44 2.04 16 19 N -0.80 -39.07 10.97 21.83 0.24 -38.83 16 20 Si 0.99 34.50 29.59 68.60 2.03 36.53 16 21 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 22 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 23 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 24 C -0.26 -12.37 9.80 22.73 0.22 -12.15 16 25 C 0.00 -0.08 9.49 22.22 0.21 0.13 16 26 H 0.09 1.37 7.84 -2.91 -0.02 1.35 16 27 H 0.11 1.24 8.06 -2.90 -0.02 1.21 16 28 H 0.12 1.49 6.81 -2.91 -0.02 1.47 16 29 H 0.07 1.22 7.79 -2.38 -0.02 1.20 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 0.97 7.19 -2.39 -0.02 0.96 16 32 H 0.07 1.00 6.53 -2.38 -0.02 0.99 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.08 7.22 -2.39 -0.02 1.06 16 36 H 0.06 1.00 6.60 -2.39 -0.02 0.98 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.90 7.76 -2.39 -0.02 1.88 16 39 H 0.42 9.46 6.47 -96.75 -0.63 8.84 16 40 H 0.12 4.93 7.59 -2.91 -0.02 4.91 16 41 H 0.11 5.76 6.18 -2.91 -0.02 5.74 16 42 H 0.30 12.95 8.30 -92.71 -0.77 12.18 16 43 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 44 H 0.12 4.90 7.60 -2.91 -0.02 4.88 16 Total: -1.00 -63.28 369.07 1.35 -61.93 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.37 Total: 37.77 kcal Atomic # 6 Polarization: -84.11 SS G_CDS: 4.39 Total: -79.72 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -0.76 Total: -70.00 kcal Atomic # 8 Polarization: -83.23 SS G_CDS: -4.35 Total: -87.58 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal Atomic # 16 Polarization: 101.40 SS G_CDS: -0.32 Total: 101.07 kcal Total: -63.28 1.35 -61.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380807478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.597 kcal (2) G-P(sol) polarization free energy of solvation -63.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds