Wall clock time and date at job start Tue Mar 31 2020 14:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47469 * 2 1 4 4 C 1.53008 * 109.46789 * 119.99481 * 2 1 3 5 5 H 1.08999 * 109.47315 * 300.00239 * 4 2 1 6 6 C 1.52998 * 109.47061 * 60.00206 * 4 2 1 7 7 O 1.42896 * 109.47370 * 185.00139 * 6 4 2 8 8 C 1.52997 * 109.47155 * 179.97438 * 4 2 1 9 9 N 1.46497 * 109.47467 * 174.99852 * 8 4 2 10 10 C 1.34770 * 120.00541 * 180.02562 * 9 8 4 11 11 O 1.21609 * 120.00090 * 359.97438 * 10 9 8 12 12 C 1.47426 * 120.00338 * 180.02562 * 10 9 8 13 13 C 1.39674 * 120.21556 * 359.95430 * 12 10 9 14 14 C 1.37807 * 119.94090 * 179.97438 * 13 12 10 15 15 C 1.38658 * 120.38211 * 0.02762 * 14 13 12 16 16 C 1.37909 * 120.43495 * 0.02562 * 15 14 13 17 17 C 1.39117 * 120.05251 * 359.95695 * 16 15 14 18 18 S 1.76199 * 120.18881 * 180.02562 * 17 16 15 19 19 C 1.76204 * 99.99787 * 6.84709 * 18 17 16 20 20 H 1.08002 * 120.00676 * 5.64639 * 19 18 17 21 21 C 1.38808 * 119.99589 * 185.65232 * 19 18 17 22 22 N 1.31555 * 120.00428 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99707 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47378 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46935 * 120.00266 * 23 21 19 26 26 H 1.48508 * 109.47005 * 240.00142 * 23 21 19 27 27 H 1.09002 * 109.47138 * 300.01049 * 1 2 3 28 28 H 1.09003 * 109.46464 * 60.00499 * 1 2 3 29 29 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47364 * 239.99195 * 2 1 3 31 31 H 1.08999 * 109.46564 * 299.99945 * 3 2 1 32 32 H 1.08999 * 109.47080 * 59.99489 * 3 2 1 33 33 H 1.08998 * 109.47334 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46767 * 304.99772 * 6 4 2 35 35 H 1.08997 * 109.47080 * 64.99802 * 6 4 2 36 36 H 0.96697 * 114.00531 * 179.97438 * 7 6 4 37 37 H 1.09008 * 109.46994 * 55.00127 * 8 4 2 38 38 H 1.09002 * 109.47404 * 295.00318 * 8 4 2 39 39 H 0.97006 * 119.99907 * 0.02562 * 9 8 4 40 40 H 1.08005 * 120.02970 * 0.04493 * 13 12 10 41 41 H 1.08004 * 119.80645 * 180.29578 * 14 13 12 42 42 H 1.07994 * 119.77880 * 179.97438 * 15 14 13 43 43 H 1.07999 * 119.96976 * 179.97438 * 16 15 14 44 44 H 0.96998 * 120.00247 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 1.5299 -2.1637 1.2495 7 8 1.9078 -2.8025 2.4705 8 6 3.5699 -0.7218 1.2492 9 7 4.0583 -1.3054 2.5010 10 6 5.3833 -1.4094 2.7243 11 8 6.1736 -1.0194 1.8863 12 6 5.8747 -1.9972 3.9838 13 6 4.9711 -2.4468 4.9493 14 6 5.4366 -2.9958 6.1244 15 6 6.7994 -3.1048 6.3560 16 6 7.7054 -2.6649 5.4140 17 6 7.2554 -2.1081 4.2212 18 16 8.4098 -1.5455 3.0148 19 6 9.9118 -2.1131 3.7406 20 1 9.8845 -2.7214 4.6326 21 6 11.1301 -1.7782 3.1660 22 7 11.1636 -1.0367 2.0798 23 14 12.7225 -2.3794 3.9358 24 1 12.4144 -3.1892 5.1418 25 1 13.4621 -3.2140 2.9553 26 1 13.5567 -1.2130 4.3220 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4425 0.0005 34 1 0.4436 -2.1649 1.1599 35 1 1.9646 -2.7027 0.4077 36 1 1.6166 -3.7220 2.5400 37 1 3.9336 0.3019 1.1593 38 1 3.9329 -1.3115 0.4074 39 1 3.4279 -1.6169 3.1693 40 1 3.9084 -2.3654 4.7746 41 1 4.7360 -3.3472 6.8675 42 1 7.1535 -3.5362 7.2805 43 1 8.7652 -2.7531 5.6023 44 1 12.0150 -0.8024 1.6785 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394180400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:32 Heat of formation + Delta-G solvation = -73.695445 kcal Electronic energy + Delta-G solvation = -24939.951794 eV Core-core repulsion = 21368.988646 eV Total energy + Delta-G solvation = -3570.963148 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.60384 -38.43190 -37.17517 -35.94060 -33.85652 -32.69044 -30.89472 -30.17204 -29.48158 -27.95503 -25.75926 -25.29732 -23.19744 -22.20401 -21.68605 -20.37595 -19.60859 -18.09635 -17.49328 -17.06786 -15.94748 -15.70967 -15.44584 -15.07218 -14.89940 -14.57002 -14.29847 -14.06296 -13.83093 -13.63601 -13.47091 -12.94584 -12.87827 -12.72032 -12.54323 -12.35076 -11.94943 -11.80976 -11.54155 -11.50453 -11.17560 -11.12641 -11.06829 -10.88648 -10.84095 -10.63144 -10.26072 -10.06413 -9.71262 -9.52847 -9.41016 -8.65860 -8.51166 -8.20726 -7.95439 -6.44857 -6.40074 -4.09713 1.65191 2.11654 3.14557 3.15973 3.23898 3.49646 3.59819 3.67353 4.03018 4.12653 4.50248 4.60638 4.64525 4.77246 4.88012 5.00644 5.14360 5.17104 5.22305 5.31015 5.38388 5.47146 5.50778 5.54467 5.56326 5.61244 5.67446 5.69467 5.86211 5.87488 5.94053 6.07802 6.18300 6.19945 6.23806 6.48746 6.70396 6.95538 7.04169 7.13504 7.22293 7.42912 7.51766 7.68216 8.22388 8.22988 9.00175 9.06183 10.63204 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.003277 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.642010 B = 8542.415864 C = 9864.360265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.097 4.097 5 H 0.084 0.916 6 C 0.079 3.921 7 O -0.571 6.571 8 C 0.129 3.871 9 N -0.726 5.726 10 C 0.548 3.452 11 O -0.518 6.518 12 C -0.174 4.174 13 C -0.059 4.059 14 C -0.188 4.188 15 C -0.078 4.078 16 C -0.155 4.155 17 C -0.056 4.056 18 S 0.180 5.820 19 C -0.594 4.594 20 H 0.091 0.909 21 C 0.083 3.917 22 N -0.859 5.859 23 Si 0.918 3.082 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.381 0.619 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.405 0.595 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.138 0.862 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.549 -1.105 -0.505 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.210 4.210 4 C -0.115 4.115 5 H 0.102 0.898 6 C 0.001 3.999 7 O -0.377 6.377 8 C 0.005 3.995 9 N -0.383 5.383 10 C 0.337 3.663 11 O -0.396 6.396 12 C -0.189 4.189 13 C -0.079 4.079 14 C -0.213 4.213 15 C -0.100 4.100 16 C -0.181 4.181 17 C -0.176 4.176 18 S 0.444 5.556 19 C -0.741 4.741 20 H 0.108 0.892 21 C -0.128 4.128 22 N -0.492 5.492 23 Si 0.744 3.256 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.203 1.203 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.228 0.772 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.244 0.756 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.155 0.845 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.435 0.580 -2.449 20.590 hybrid contribution 0.537 -1.803 1.896 2.671 sum -19.898 -1.223 -0.553 19.943 Atomic orbital electron populations 1.21929 0.94998 1.01766 1.02046 1.20995 0.95737 0.96649 0.97130 1.21932 1.02053 0.95150 1.01879 1.21495 0.95605 0.94866 0.99581 0.89801 1.22326 0.97867 0.93047 0.86628 1.86300 1.81617 1.30425 1.39373 1.21270 0.91642 0.98967 0.87662 1.45904 1.07040 1.64810 1.20563 1.18324 0.81963 0.79098 0.86885 1.90764 1.54336 1.48286 1.46198 1.19172 0.92498 1.10998 0.96206 1.20961 0.97696 0.96043 0.93189 1.20633 0.95279 1.07033 0.98354 1.21069 0.93332 0.97569 0.98067 1.21421 1.00726 1.02300 0.93622 1.23089 0.97242 0.97783 0.99499 1.84788 0.92814 1.59366 1.18651 1.24107 0.94320 1.38372 1.17286 0.89175 1.25092 0.99437 0.93804 0.94470 1.69991 1.27368 1.33420 1.18413 0.86116 0.81315 0.78783 0.79401 1.19186 1.20294 1.20281 0.92490 0.92450 0.92513 0.90632 0.92470 0.92497 0.91609 0.93290 0.93501 0.77159 0.91394 0.92106 0.75640 0.86829 0.87193 0.87144 0.84463 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.85 37.16 0.33 -0.61 16 2 C -0.09 -0.67 2.51 -90.61 -0.23 -0.90 16 3 C -0.15 -1.27 8.85 37.16 0.33 -0.94 16 4 C -0.10 -0.91 1.88 -90.62 -0.17 -1.08 16 5 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 6 C 0.08 0.65 6.21 37.16 0.23 0.88 16 7 O -0.57 -5.09 10.88 -35.23 -0.38 -5.48 16 8 C 0.13 1.73 4.85 -4.04 -0.02 1.71 16 9 N -0.73 -11.43 4.95 -61.38 -0.30 -11.74 16 10 C 0.55 11.36 7.75 -12.52 -0.10 11.26 16 11 O -0.52 -12.71 13.77 5.27 0.07 -12.63 16 12 C -0.17 -3.64 5.89 -104.76 -0.62 -4.26 16 13 C -0.06 -1.00 9.53 -39.20 -0.37 -1.37 16 14 C -0.19 -3.06 10.02 -39.58 -0.40 -3.46 16 15 C -0.08 -1.40 10.03 -39.55 -0.40 -1.80 16 16 C -0.16 -3.38 9.22 -39.38 -0.36 -3.74 16 17 C -0.06 -1.34 6.14 -38.39 -0.24 -1.58 16 18 S 0.18 4.98 18.56 -107.50 -2.00 2.99 16 19 C -0.59 -16.79 9.00 30.94 0.28 -16.51 16 20 H 0.09 2.42 4.98 -52.49 -0.26 2.16 16 21 C 0.08 2.31 5.49 -17.46 -0.10 2.21 16 22 N -0.86 -25.23 13.22 55.49 0.73 -24.50 16 23 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 6.32 -51.93 -0.33 -0.01 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.63 6.32 -51.93 -0.33 0.31 16 34 H 0.05 0.31 6.17 -51.93 -0.32 -0.01 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.38 1.94 9.12 45.56 0.42 2.36 16 37 H 0.07 0.97 6.17 -51.92 -0.32 0.65 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.40 5.61 4.32 -40.82 -0.18 5.44 16 40 H 0.11 1.58 6.40 -52.48 -0.34 1.24 16 41 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.14 3.10 5.04 -52.49 -0.26 2.83 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -33.63 362.88 -8.54 -42.18 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.28 Total: 7.83 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -1.83 Total: -20.18 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.43 Total: -36.24 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.31 Total: -18.11 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -2.00 Total: 2.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.63 -8.54 -42.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394180400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.520 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds