Wall clock time and date at job start Tue Mar 31 2020 14:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47194 * 2 1 4 4 C 1.53000 * 109.47565 * 239.99509 * 2 1 3 5 5 H 1.09007 * 109.47209 * 305.42694 * 4 2 1 6 6 C 1.52995 * 109.47570 * 185.42358 * 4 2 1 7 7 O 1.42903 * 109.46821 * 65.04197 * 6 4 2 8 8 C 1.53004 * 109.46798 * 65.42150 * 4 2 1 9 9 N 1.46503 * 109.47145 * 184.99832 * 8 4 2 10 10 C 1.34771 * 120.00041 * 180.02562 * 9 8 4 11 11 O 1.21605 * 120.00126 * 0.02562 * 10 9 8 12 12 C 1.47434 * 120.00059 * 180.02562 * 10 9 8 13 13 C 1.39684 * 120.21087 * 359.97438 * 12 10 9 14 14 C 1.37806 * 119.93260 * 180.02562 * 13 12 10 15 15 C 1.38659 * 120.38575 * 0.02562 * 14 13 12 16 16 C 1.37915 * 120.43608 * 359.97438 * 15 14 13 17 17 C 1.39120 * 120.04910 * 359.71961 * 16 15 14 18 18 S 1.76194 * 120.18679 * 180.27575 * 17 16 15 19 19 C 1.76203 * 100.00389 * 352.72025 * 18 17 16 20 20 H 1.08005 * 119.99425 * 4.98303 * 19 18 17 21 21 C 1.38804 * 120.00328 * 184.98315 * 19 18 17 22 22 N 1.31558 * 119.99633 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00040 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46902 * 90.00260 * 23 21 19 25 25 H 1.48499 * 109.47071 * 209.99784 * 23 21 19 26 26 H 1.48495 * 109.47349 * 330.00344 * 23 21 19 27 27 H 1.09004 * 109.46592 * 54.84777 * 1 2 3 28 28 H 1.09007 * 109.46837 * 174.83868 * 1 2 3 29 29 H 1.08989 * 109.47688 * 294.84566 * 1 2 3 30 30 H 1.09001 * 109.46672 * 119.99587 * 2 1 3 31 31 H 1.08995 * 109.47244 * 59.99409 * 3 2 1 32 32 H 1.08996 * 109.47183 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46974 * 299.99402 * 3 2 1 34 34 H 1.08989 * 109.47409 * 185.04483 * 6 4 2 35 35 H 1.09003 * 109.47181 * 305.04857 * 6 4 2 36 36 H 0.96695 * 113.99918 * 180.02562 * 7 6 4 37 37 H 1.08994 * 109.47462 * 305.00497 * 8 4 2 38 38 H 1.09003 * 109.46552 * 65.00561 * 8 4 2 39 39 H 0.97001 * 119.99637 * 0.02562 * 9 8 4 40 40 H 1.07991 * 120.03248 * 359.97438 * 13 12 10 41 41 H 1.08000 * 119.80449 * 179.97438 * 14 13 12 42 42 H 1.08003 * 119.78169 * 179.97438 * 15 14 13 43 43 H 1.07996 * 119.97239 * 180.02562 * 16 15 14 44 44 H 0.96997 * 119.99513 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 1.5996 -1.7172 -1.2990 6 6 3.5640 -0.8405 -1.1828 7 8 3.9287 -1.6812 -0.0864 8 6 1.6444 0.0743 -2.4947 9 7 2.0273 -0.6744 -3.6944 10 6 1.7759 -0.1639 -4.9161 11 8 1.2317 0.9183 -5.0227 12 6 2.1608 -0.9176 -6.1234 13 6 2.7866 -2.1608 -6.0062 14 6 3.1443 -2.8601 -7.1385 15 6 2.8872 -2.3368 -8.3965 16 6 2.2701 -1.1107 -8.5303 17 6 1.8955 -0.3922 -7.3995 18 16 1.1003 1.1712 -7.5663 19 6 1.2424 1.4026 -9.3073 20 1 1.6550 0.6181 -9.9244 21 6 0.8242 2.5931 -9.8857 22 7 0.3213 3.5485 -9.1340 23 14 0.9755 2.8386 -11.7313 24 1 -0.2658 2.3679 -12.3966 25 1 1.1777 4.2804 -12.0239 26 1 2.1348 2.0628 -12.2405 27 1 -0.3633 0.5917 -0.8403 28 1 -0.3633 -1.0236 -0.0925 29 1 -0.3634 0.4317 0.9324 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 3.9354 -1.2731 -2.1117 35 1 4.0000 0.1487 -1.0428 36 1 4.8826 -1.8016 0.0166 37 1 0.5665 0.2355 -2.4957 38 1 2.1559 1.0368 -2.4886 39 1 2.4618 -1.5375 -3.6094 40 1 2.9907 -2.5732 -5.0292 41 1 3.6285 -3.8210 -7.0454 42 1 3.1721 -2.8930 -9.2774 43 1 2.0731 -0.7104 -9.5138 44 1 0.0294 4.3806 -9.5382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394180401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:35 Heat of formation + Delta-G solvation = -73.913848 kcal Electronic energy + Delta-G solvation = -24814.533522 eV Core-core repulsion = 21243.560903 eV Total energy + Delta-G solvation = -3570.972619 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.76720 -38.55058 -37.32805 -35.90751 -33.98908 -32.75263 -30.94309 -30.28228 -29.49816 -27.40464 -25.84283 -25.82468 -23.37206 -22.58278 -21.88436 -20.18767 -19.27923 -18.11729 -17.62521 -17.00677 -16.27897 -15.74342 -15.57459 -15.16336 -15.04678 -14.68609 -14.27211 -14.13200 -13.81474 -13.65484 -13.39560 -13.03082 -12.98352 -12.73751 -12.72862 -12.23708 -12.12419 -11.87564 -11.59442 -11.43977 -11.22863 -11.20042 -11.06443 -10.93109 -10.62545 -10.55474 -10.31083 -10.09761 -9.80870 -9.61587 -9.55193 -8.76810 -8.72500 -8.33670 -8.06332 -6.53575 -6.45765 -4.16836 1.52796 2.00789 3.10085 3.12874 3.19508 3.40962 3.51521 3.52629 3.93696 4.06469 4.48041 4.52264 4.63667 4.76908 4.95083 5.07147 5.12356 5.19204 5.21899 5.26764 5.35024 5.39987 5.46119 5.55958 5.58848 5.62359 5.79436 5.80805 5.82966 5.89487 5.99985 6.06196 6.10634 6.22301 6.28449 6.37968 6.58146 6.75178 6.84378 7.01539 7.12306 7.36483 7.44840 7.58817 7.89244 8.16379 8.79146 9.00228 10.57272 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.003246 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.314351 B = 8623.669541 C = 9973.632299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 C -0.156 4.156 4 C -0.094 4.094 5 H 0.083 0.917 6 C 0.075 3.925 7 O -0.573 6.573 8 C 0.125 3.875 9 N -0.741 5.741 10 C 0.551 3.449 11 O -0.508 6.508 12 C -0.177 4.177 13 C -0.062 4.062 14 C -0.187 4.187 15 C -0.077 4.077 16 C -0.153 4.153 17 C -0.056 4.056 18 S 0.185 5.815 19 C -0.597 4.597 20 H 0.091 0.909 21 C 0.084 3.916 22 N -0.858 5.858 23 Si 0.919 3.081 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.268 1.268 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.378 0.622 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.393 0.607 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -10.038 15.092 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 C -0.213 4.213 4 C -0.113 4.113 5 H 0.101 0.899 6 C -0.002 4.002 7 O -0.378 6.378 8 C 0.002 3.998 9 N -0.396 5.396 10 C 0.340 3.660 11 O -0.385 6.385 12 C -0.193 4.193 13 C -0.082 4.082 14 C -0.211 4.211 15 C -0.099 4.099 16 C -0.178 4.178 17 C -0.176 4.176 18 S 0.449 5.551 19 C -0.743 4.743 20 H 0.109 0.891 21 C -0.127 4.127 22 N -0.490 5.490 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.192 1.192 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.225 0.775 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.228 0.772 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.156 0.844 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.197 -7.929 15.810 18.178 hybrid contribution 1.577 -1.184 -2.161 2.925 sum 5.774 -9.113 13.649 17.397 Atomic orbital electron populations 1.21935 0.95063 1.01961 1.02049 1.20997 0.95711 0.96120 0.97363 1.22003 1.01018 0.96007 1.02289 1.21431 0.94365 1.00481 0.94976 0.89853 1.22315 0.95421 0.93759 0.88726 1.86452 1.28515 1.71075 1.51769 1.21388 1.01113 0.95078 0.82253 1.45923 1.64610 1.23636 1.05420 1.18311 0.79100 0.85648 0.82892 1.90788 1.41367 1.20793 1.85558 1.19123 1.10854 0.97613 0.91683 1.20884 0.96356 0.93279 0.97655 1.20631 1.07132 1.00801 0.92570 1.21085 0.96767 0.95187 0.96855 1.21441 1.02089 0.95260 0.99053 1.23080 0.98047 1.02643 0.93873 1.84743 1.56887 1.07904 1.05559 1.24073 1.49117 1.05066 0.96079 0.89127 1.25092 0.93352 0.94420 0.99870 1.69979 1.37054 1.05726 1.36285 0.86149 0.79066 0.77882 0.82466 1.19877 1.20466 1.19229 0.92062 0.92644 0.92674 0.90192 0.92671 0.92642 0.91857 0.93481 0.92985 0.77542 0.90686 0.91120 0.77161 0.87290 0.87091 0.87015 0.84384 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.83 37.16 0.33 -1.05 16 2 C -0.08 -0.76 2.65 -90.62 -0.24 -1.00 16 3 C -0.16 -1.41 8.46 37.16 0.31 -1.10 16 4 C -0.09 -0.91 1.90 -90.62 -0.17 -1.08 16 5 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 6 C 0.08 0.67 6.23 37.16 0.23 0.90 16 7 O -0.57 -4.88 13.11 -35.23 -0.46 -5.34 16 8 C 0.13 1.56 4.26 -4.04 -0.02 1.54 16 9 N -0.74 -10.38 5.18 -61.38 -0.32 -10.70 16 10 C 0.55 10.60 7.75 -12.52 -0.10 10.50 16 11 O -0.51 -11.82 13.77 5.27 0.07 -11.74 16 12 C -0.18 -3.49 5.89 -104.75 -0.62 -4.11 16 13 C -0.06 -0.97 9.53 -39.20 -0.37 -1.34 16 14 C -0.19 -2.85 10.02 -39.58 -0.40 -3.25 16 15 C -0.08 -1.30 10.03 -39.54 -0.40 -1.70 16 16 C -0.15 -3.19 9.25 -39.37 -0.36 -3.56 16 17 C -0.06 -1.29 6.14 -38.39 -0.24 -1.52 16 18 S 0.18 4.95 18.56 -107.50 -2.00 2.95 16 19 C -0.60 -16.45 9.08 30.94 0.28 -16.17 16 20 H 0.09 2.36 4.84 -52.48 -0.25 2.11 16 21 C 0.08 2.29 5.49 -17.46 -0.10 2.20 16 22 N -0.86 -24.73 13.22 55.49 0.73 -23.99 16 23 Si 0.92 20.66 29.55 -169.99 -5.02 15.63 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H 0.06 0.60 6.72 -51.93 -0.35 0.25 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.45 8.14 -51.94 -0.42 0.02 16 30 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.48 6.48 -51.93 -0.34 0.14 16 33 H 0.06 0.63 6.45 -51.93 -0.34 0.30 16 34 H 0.05 0.40 7.07 -51.94 -0.37 0.03 16 35 H 0.05 0.45 6.36 -51.93 -0.33 0.12 16 36 H 0.38 1.66 9.12 45.56 0.42 2.07 16 37 H 0.07 1.01 6.47 -51.93 -0.34 0.67 16 38 H 0.07 0.94 6.65 -51.93 -0.35 0.60 16 39 H 0.39 4.46 5.68 -40.82 -0.23 4.23 16 40 H 0.11 1.29 6.40 -52.49 -0.34 0.96 16 41 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 43 H 0.14 2.99 4.97 -52.49 -0.26 2.73 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -32.65 362.13 -8.52 -41.18 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.14 Total: 7.30 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.85 Total: -20.74 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.42 Total: -34.69 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.39 Total: -17.08 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -2.00 Total: 2.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.65 -8.52 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394180401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.736 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds