Wall clock time and date at job start Tue Mar 31 2020 14:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47194 * 2 1 4 4 C 1.53000 * 109.47565 * 239.99509 * 2 1 3 5 5 H 1.09007 * 109.47209 * 305.42694 * 4 2 1 6 6 C 1.52995 * 109.47570 * 185.42358 * 4 2 1 7 7 O 1.42903 * 109.46821 * 65.04197 * 6 4 2 8 8 C 1.53004 * 109.46798 * 65.42150 * 4 2 1 9 9 N 1.46503 * 109.47145 * 184.99832 * 8 4 2 10 10 C 1.34771 * 120.00041 * 180.02562 * 9 8 4 11 11 O 1.21605 * 120.00126 * 0.02562 * 10 9 8 12 12 C 1.47434 * 120.00059 * 180.02562 * 10 9 8 13 13 C 1.39684 * 120.21087 * 359.97438 * 12 10 9 14 14 C 1.37806 * 119.93260 * 180.02562 * 13 12 10 15 15 C 1.38659 * 120.38575 * 0.02562 * 14 13 12 16 16 C 1.37915 * 120.43608 * 359.97438 * 15 14 13 17 17 C 1.39120 * 120.04910 * 359.71961 * 16 15 14 18 18 S 1.76194 * 120.18679 * 180.27575 * 17 16 15 19 19 C 1.76203 * 100.00389 * 352.72025 * 18 17 16 20 20 H 1.08005 * 119.99425 * 4.98303 * 19 18 17 21 21 C 1.38804 * 120.00328 * 184.98315 * 19 18 17 22 22 N 1.31558 * 119.99633 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00040 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46902 * 90.00260 * 23 21 19 25 25 H 1.48499 * 109.47071 * 209.99784 * 23 21 19 26 26 H 1.48495 * 109.47349 * 330.00344 * 23 21 19 27 27 H 1.09004 * 109.46592 * 54.84777 * 1 2 3 28 28 H 1.09007 * 109.46837 * 174.83868 * 1 2 3 29 29 H 1.08989 * 109.47688 * 294.84566 * 1 2 3 30 30 H 1.09001 * 109.46672 * 119.99587 * 2 1 3 31 31 H 1.08995 * 109.47244 * 59.99409 * 3 2 1 32 32 H 1.08996 * 109.47183 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46974 * 299.99402 * 3 2 1 34 34 H 1.08989 * 109.47409 * 185.04483 * 6 4 2 35 35 H 1.09003 * 109.47181 * 305.04857 * 6 4 2 36 36 H 0.96695 * 113.99918 * 180.02562 * 7 6 4 37 37 H 1.08994 * 109.47462 * 305.00497 * 8 4 2 38 38 H 1.09003 * 109.46552 * 65.00561 * 8 4 2 39 39 H 0.97001 * 119.99637 * 0.02562 * 9 8 4 40 40 H 1.07991 * 120.03248 * 359.97438 * 13 12 10 41 41 H 1.08000 * 119.80449 * 179.97438 * 14 13 12 42 42 H 1.08003 * 119.78169 * 179.97438 * 15 14 13 43 43 H 1.07996 * 119.97239 * 180.02562 * 16 15 14 44 44 H 0.96997 * 119.99513 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 1.5996 -1.7172 -1.2990 6 6 3.5640 -0.8405 -1.1828 7 8 3.9287 -1.6812 -0.0864 8 6 1.6444 0.0743 -2.4947 9 7 2.0273 -0.6744 -3.6944 10 6 1.7759 -0.1639 -4.9161 11 8 1.2317 0.9183 -5.0227 12 6 2.1608 -0.9176 -6.1234 13 6 2.7866 -2.1608 -6.0062 14 6 3.1443 -2.8601 -7.1385 15 6 2.8872 -2.3368 -8.3965 16 6 2.2701 -1.1107 -8.5303 17 6 1.8955 -0.3922 -7.3995 18 16 1.1003 1.1712 -7.5663 19 6 1.2424 1.4026 -9.3073 20 1 1.6550 0.6181 -9.9244 21 6 0.8242 2.5931 -9.8857 22 7 0.3213 3.5485 -9.1340 23 14 0.9755 2.8386 -11.7313 24 1 -0.2658 2.3679 -12.3966 25 1 1.1777 4.2804 -12.0239 26 1 2.1348 2.0628 -12.2405 27 1 -0.3633 0.5917 -0.8403 28 1 -0.3633 -1.0236 -0.0925 29 1 -0.3634 0.4317 0.9324 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 3.9354 -1.2731 -2.1117 35 1 4.0000 0.1487 -1.0428 36 1 4.8826 -1.8016 0.0166 37 1 0.5665 0.2355 -2.4957 38 1 2.1559 1.0368 -2.4886 39 1 2.4618 -1.5375 -3.6094 40 1 2.9907 -2.5732 -5.0292 41 1 3.6285 -3.8210 -7.0454 42 1 3.1721 -2.8930 -9.2774 43 1 2.0731 -0.7104 -9.5138 44 1 0.0294 4.3806 -9.5382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394180401.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:35 Heat of formation + Delta-G solvation = -97.479952 kcal Electronic energy + Delta-G solvation = -24815.555425 eV Core-core repulsion = 21243.560903 eV Total energy + Delta-G solvation = -3571.994522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12358 -39.58825 -38.72950 -36.64936 -35.24695 -34.75986 -32.31965 -31.78216 -30.47513 -28.16741 -27.83814 -26.86790 -24.56681 -23.64447 -23.29725 -21.64964 -20.41066 -19.61649 -18.71687 -18.16614 -17.52646 -17.18374 -16.98277 -16.52573 -16.08981 -15.98761 -15.62472 -15.31242 -15.25608 -14.99078 -14.66340 -14.36903 -14.13195 -13.91176 -13.54001 -13.38576 -13.31591 -13.10717 -12.98785 -12.87346 -12.78182 -12.54326 -12.30926 -12.04644 -11.82548 -11.48293 -11.42097 -11.39873 -11.37226 -11.22154 -10.75606 -10.42016 -10.10965 -9.89883 -9.75225 -8.46344 -8.44101 -6.23935 0.04135 0.54030 1.26764 1.36422 1.45215 1.65070 2.02998 2.16759 2.28786 2.87959 3.04820 3.24648 3.26490 3.71978 3.82992 3.95496 4.01785 4.04571 4.26911 4.30695 4.39831 4.47714 4.57574 4.60709 4.62490 4.64779 4.76233 4.80643 4.86133 4.95254 5.02486 5.06841 5.10377 5.13380 5.27851 5.36564 5.44202 5.46272 5.47556 5.56292 5.59450 5.67989 6.10253 6.17145 6.62443 6.93778 6.96485 7.36691 8.60826 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.003246 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.314351 B = 8623.669541 C = 9973.632299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 C -0.156 4.156 4 C -0.085 4.085 5 H 0.089 0.911 6 C 0.078 3.922 7 O -0.583 6.583 8 C 0.127 3.873 9 N -0.714 5.714 10 C 0.545 3.455 11 O -0.556 6.556 12 C -0.182 4.182 13 C -0.054 4.054 14 C -0.157 4.157 15 C -0.070 4.070 16 C -0.176 4.176 17 C -0.072 4.072 18 S 0.064 5.936 19 C -0.604 4.604 20 H 0.095 0.905 21 C 0.024 3.976 22 N -0.905 5.905 23 Si 0.993 3.007 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.258 1.258 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.397 0.603 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.411 0.589 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.149 0.851 43 H 0.119 0.881 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.501 -14.241 15.974 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.097 4.097 3 C -0.213 4.213 4 C -0.104 4.104 5 H 0.107 0.893 6 C 0.001 3.999 7 O -0.391 6.391 8 C 0.004 3.996 9 N -0.369 5.369 10 C 0.334 3.666 11 O -0.436 6.436 12 C -0.195 4.195 13 C -0.074 4.074 14 C -0.180 4.180 15 C -0.090 4.090 16 C -0.201 4.201 17 C -0.191 4.191 18 S 0.322 5.678 19 C -0.750 4.750 20 H 0.113 0.887 21 C -0.181 4.181 22 N -0.540 5.540 23 Si 0.814 3.186 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.182 1.182 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.246 0.754 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.249 0.751 40 H 0.177 0.823 41 H 0.184 0.816 42 H 0.167 0.833 43 H 0.136 0.864 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.732 -12.264 16.754 21.827 hybrid contribution 0.985 -0.253 -2.183 2.409 sum 7.717 -12.517 14.571 20.701 Atomic orbital electron populations 1.21938 0.95150 1.02013 1.01937 1.20966 0.95614 0.95987 0.97145 1.21993 1.01361 0.96006 1.01907 1.21341 0.95571 1.00062 0.93396 0.89305 1.22212 0.94306 0.94098 0.89314 1.86402 1.30527 1.70780 1.51412 1.21433 1.00273 0.95175 0.82742 1.45700 1.62995 1.23980 1.04255 1.18508 0.78677 0.85123 0.84315 1.90791 1.43529 1.22971 1.86284 1.19505 1.10343 0.99056 0.90644 1.21430 0.94203 0.91108 1.00648 1.21326 1.03664 1.01908 0.91080 1.21542 0.94613 0.93336 0.99554 1.21457 1.03788 0.97164 0.97659 1.22987 0.99345 1.00621 0.96106 1.84921 1.62625 1.13453 1.06763 1.24282 1.49191 1.05511 0.96033 0.88710 1.26145 0.93006 0.93983 1.05001 1.70136 1.39122 1.06384 1.38381 0.85035 0.79431 0.78013 0.76084 1.19026 1.19842 1.18181 0.93534 0.92233 0.91744 0.89665 0.91858 0.92084 0.93480 0.92776 0.92967 0.75351 0.92045 0.92195 0.75107 0.82293 0.81636 0.83284 0.86367 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.83 71.98 0.64 -2.01 16 2 C -0.08 -1.32 2.65 -10.79 -0.03 -1.35 16 3 C -0.16 -2.71 8.46 71.98 0.61 -2.10 16 4 C -0.08 -1.49 1.90 -10.79 -0.02 -1.51 16 5 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 6 C 0.08 1.16 6.23 71.98 0.45 1.61 16 7 O -0.58 -7.93 13.11 -148.98 -1.95 -9.88 16 8 C 0.13 3.12 4.26 86.38 0.37 3.48 16 9 N -0.71 -18.94 5.18 -466.36 -2.42 -21.36 16 10 C 0.54 21.16 7.75 86.67 0.67 21.83 16 11 O -0.56 -27.57 13.77 -4.05 -0.06 -27.63 16 12 C -0.18 -6.98 5.89 -19.95 -0.12 -7.10 16 13 C -0.05 -1.43 9.53 22.52 0.21 -1.21 16 14 C -0.16 -3.77 10.02 22.27 0.22 -3.55 16 15 C -0.07 -2.07 10.03 22.29 0.22 -1.85 16 16 C -0.18 -7.28 9.25 22.41 0.21 -7.07 16 17 C -0.07 -3.40 6.14 23.04 0.14 -3.26 16 18 S 0.06 3.70 18.56 -56.49 -1.05 2.65 16 19 C -0.60 -35.47 9.08 67.96 0.62 -34.85 16 20 H 0.10 5.24 4.84 -2.91 -0.01 5.22 16 21 C 0.02 1.40 5.49 84.87 0.47 1.86 16 22 N -0.91 -55.83 13.22 21.65 0.29 -55.54 16 23 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 27 H 0.05 0.94 6.72 -2.38 -0.02 0.92 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.42 7.69 -2.39 -0.02 1.40 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.98 6.48 -2.39 -0.02 0.97 16 33 H 0.05 0.97 6.45 -2.39 -0.02 0.95 16 34 H 0.05 0.72 7.07 -2.39 -0.02 0.70 16 35 H 0.05 0.78 6.36 -2.39 -0.02 0.77 16 36 H 0.40 2.07 9.12 -74.06 -0.68 1.39 16 37 H 0.06 1.71 6.47 -2.39 -0.02 1.70 16 38 H 0.06 1.64 6.65 -2.39 -0.02 1.62 16 39 H 0.41 7.75 5.68 -92.71 -0.53 7.23 16 40 H 0.16 2.63 6.40 -2.92 -0.02 2.61 16 41 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 43 H 0.12 5.31 4.97 -2.91 -0.01 5.30 16 44 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -79.98 362.13 1.35 -78.63 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.15 Total: 24.03 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 4.66 Total: -37.07 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -2.13 Total: -76.90 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -2.01 Total: -37.51 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.05 Total: 2.65 kcal Total: -79.98 1.35 -78.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394180401.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.846 kcal (2) G-P(sol) polarization free energy of solvation -79.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds