Wall clock time and date at job start Tue Mar 31 2020 14:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47006 * 2 1 4 4 C 1.53001 * 109.47168 * 180.72419 * 3 2 1 5 5 H 1.09000 * 109.99459 * 305.73685 * 4 3 2 6 6 C 1.54315 * 109.77308 * 66.89018 * 4 3 2 7 7 C 1.55159 * 102.85902 * 141.88741 * 6 4 3 8 8 C 1.54906 * 101.58166 * 324.30230 * 7 6 4 9 9 N 1.47020 * 109.88134 * 184.64344 * 4 3 2 10 10 S 1.65595 * 125.65108 * 61.67442 * 9 4 3 11 11 O 1.42097 * 106.40434 * 149.38576 * 10 9 4 12 12 O 1.42108 * 106.40049 * 16.46697 * 10 9 4 13 13 C 1.76199 * 107.22248 * 262.92930 * 10 9 4 14 14 C 1.38635 * 119.75116 * 97.57071 * 13 10 9 15 15 C 1.37616 * 120.24834 * 180.02562 * 14 13 10 16 16 C 1.40712 * 119.74671 * 0.02562 * 15 14 13 17 17 C 1.41397 * 120.24582 * 180.02562 * 16 15 14 18 18 H 1.07993 * 119.99788 * 337.91697 * 17 16 15 19 19 C 1.39948 * 119.99989 * 158.19338 * 17 16 15 20 20 N 1.30825 * 119.99985 * 335.04887 * 19 17 16 21 21 Si 1.86797 * 119.99982 * 155.04400 * 19 17 16 22 22 H 1.48500 * 109.47083 * 94.95701 * 21 19 17 23 23 H 1.48494 * 109.47140 * 214.96095 * 21 19 17 24 24 H 1.48501 * 109.46800 * 334.95832 * 21 19 17 25 25 C 1.40720 * 119.51109 * 0.27159 * 16 15 14 26 26 C 1.37623 * 119.74300 * 359.47025 * 25 16 15 27 27 H 1.09003 * 109.46957 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47397 * 299.99538 * 1 2 3 29 29 H 1.09000 * 109.47673 * 60.00159 * 1 2 3 30 30 H 1.09001 * 109.47056 * 240.00567 * 2 1 3 31 31 H 1.08999 * 109.47176 * 119.99671 * 2 1 3 32 32 H 1.08999 * 109.46576 * 60.72318 * 3 2 1 33 33 H 1.09001 * 109.46880 * 300.72236 * 3 2 1 34 34 H 1.08997 * 110.92654 * 23.47223 * 6 4 3 35 35 H 1.08999 * 110.74128 * 260.21481 * 6 4 3 36 36 H 1.09006 * 111.00023 * 206.22897 * 7 6 4 37 37 H 1.08997 * 111.00678 * 82.38221 * 7 6 4 38 38 H 1.09004 * 110.36973 * 278.17232 * 8 7 6 39 39 H 1.09002 * 110.46373 * 155.89739 * 8 7 6 40 40 H 1.07999 * 119.87324 * 0.02562 * 14 13 10 41 41 H 1.08003 * 120.12625 * 179.97438 * 15 14 13 42 42 H 0.96999 * 119.99752 * 180.02562 * 20 19 17 43 43 H 1.07999 * 120.13031 * 179.70887 * 25 16 15 44 44 H 1.08003 * 119.87363 * 180.23334 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0182 5 1 3.9524 0.8409 0.8062 6 6 4.0759 0.8783 -1.3624 7 6 5.3092 1.7689 -1.6684 8 6 4.8458 3.1411 -1.1190 9 7 4.0711 2.8202 0.0935 10 16 3.8141 3.8400 1.3726 11 8 4.9530 4.6867 1.4460 12 8 3.3797 3.0263 2.4536 13 6 2.4517 4.8743 0.9497 14 6 1.1810 4.5589 1.4057 15 6 0.1096 5.3592 1.0811 16 6 0.3075 6.5009 0.2828 17 6 -0.7858 7.3309 -0.0566 18 1 -1.7913 6.9382 -0.0273 19 6 -0.5643 8.6596 -0.4360 20 7 0.5123 9.2842 -0.0330 21 14 -1.8057 9.5414 -1.5180 22 1 -2.7458 10.3125 -0.6654 23 1 -1.0938 10.4684 -2.4339 24 1 -2.5644 8.5440 -2.3147 25 6 1.6007 6.8078 -0.1795 26 6 2.6583 5.9961 0.1619 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6872 1.9525 0.8964 33 1 1.6660 1.9601 -0.8835 34 1 3.3196 0.9868 -2.1396 35 1 4.3709 -0.1656 -1.2562 36 1 5.4972 1.8206 -2.7408 37 1 6.1906 1.4121 -1.1356 38 1 4.2150 3.6486 -1.8489 39 1 5.7063 3.7608 -0.8665 40 1 1.0315 3.6818 2.0178 41 1 -0.8795 5.1114 1.4370 42 1 0.6656 10.2053 -0.2956 43 1 1.7632 7.6790 -0.7967 44 1 3.6523 6.2318 -0.1886 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396777852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:02 Heat of formation + Delta-G solvation = -80.799547 kcal Electronic energy + Delta-G solvation = -26098.610278 eV Core-core repulsion = 22527.339073 eV Total energy + Delta-G solvation = -3571.271205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.78544 -37.55550 -36.51085 -35.09228 -34.47012 -34.06078 -30.75067 -30.26405 -29.67114 -29.44529 -25.82134 -25.40530 -22.09890 -21.72586 -21.45256 -21.07673 -20.38551 -18.28217 -17.62644 -17.24738 -16.46087 -15.99256 -15.46877 -15.10061 -14.73429 -14.16586 -13.84078 -13.62069 -13.47113 -13.29711 -13.23319 -12.99711 -12.64033 -12.43836 -12.20640 -12.00821 -11.69940 -11.65397 -11.46173 -11.40501 -11.35652 -11.24060 -11.21037 -11.06855 -10.87462 -10.85870 -10.75945 -10.61576 -10.48841 -10.27913 -9.72558 -9.58543 -9.42395 -8.58699 -7.97984 -7.69602 -7.21627 -4.78461 1.21459 2.28260 2.84555 2.88225 2.93475 2.95768 3.63605 3.67585 4.20603 4.50676 4.59565 4.68051 4.85924 5.09252 5.10546 5.23559 5.26504 5.38654 5.46440 5.50610 5.65421 5.73877 5.82057 5.85309 5.90467 5.94025 5.99568 6.04892 6.08354 6.10015 6.21756 6.30021 6.35752 6.50798 6.57602 6.64641 6.66812 6.77612 6.98997 7.06554 7.33636 7.44444 7.63118 7.76106 7.96150 8.30298 8.50429 8.65717 9.71627 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.004134 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.881335 B = 6771.769301 C = 7431.779532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.144 4.144 4 C 0.156 3.844 5 H 0.073 0.927 6 C -0.123 4.123 7 C -0.129 4.129 8 C 0.116 3.884 9 N -1.013 6.013 10 S 2.704 3.296 11 O -0.982 6.982 12 O -0.981 6.981 13 C -0.789 4.789 14 C 0.006 3.994 15 C -0.241 4.241 16 C 0.140 3.860 17 C -0.436 4.436 18 H 0.089 0.911 19 C 0.077 3.923 20 N -0.755 5.755 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.255 1.255 25 C -0.189 4.189 26 C -0.011 4.011 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.290 0.710 43 H 0.116 0.884 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.278 -11.940 -5.908 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.183 4.183 4 C 0.050 3.950 5 H 0.091 0.909 6 C -0.162 4.162 7 C -0.168 4.168 8 C -0.009 4.009 9 N -0.848 5.848 10 S 2.806 3.194 11 O -0.973 6.973 12 O -0.972 6.972 13 C -0.885 4.885 14 C -0.014 4.014 15 C -0.261 4.261 16 C 0.136 3.864 17 C -0.463 4.463 18 H 0.107 0.893 19 C -0.147 4.147 20 N -0.376 5.376 21 Si 0.734 3.266 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.209 4.209 26 C -0.032 4.032 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.134 0.866 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.954 -11.662 -5.032 13.302 hybrid contribution -1.121 0.946 -0.830 1.685 sum 2.834 -10.715 -5.862 12.538 Atomic orbital electron populations 1.21767 0.95817 1.01140 1.02303 1.21439 0.95983 0.96362 1.01755 1.22218 0.94765 0.97532 1.03796 1.21242 0.93580 0.82206 0.97943 0.90851 1.22707 0.97709 0.99152 0.96621 1.22754 0.97978 0.95057 1.01050 1.21952 0.95116 0.97258 0.86578 1.58954 1.66117 1.24621 1.35135 1.00907 0.74256 0.72415 0.71865 1.93479 1.50739 1.67212 1.85847 1.93460 1.83576 1.69369 1.50769 1.29159 1.14108 1.17187 1.28094 1.20139 0.91360 0.96202 0.93712 1.20969 0.97205 1.00876 1.07060 1.17799 0.92744 0.90059 0.85755 1.19922 0.95249 0.94635 1.36481 0.89341 1.26155 0.96325 0.98053 0.94211 1.69866 1.24890 1.11911 1.30937 0.86227 0.80654 0.79444 0.80247 1.19045 1.19511 1.17879 1.21200 0.92728 1.01477 1.05525 1.20162 0.97386 0.92169 0.93449 0.93089 0.92459 0.92681 0.92059 0.91987 0.90762 0.90903 0.90478 0.90642 0.90338 0.90902 0.91613 0.90342 0.87798 0.88287 0.89838 0.86610 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.31 5.79 -26.73 -0.15 -1.46 16 3 C -0.14 -2.01 4.72 -26.73 -0.13 -2.14 16 4 C 0.16 2.12 2.83 -66.96 -0.19 1.93 16 5 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.12 -1.25 5.56 -24.90 -0.14 -1.39 16 7 C -0.13 -1.31 7.08 -24.58 -0.17 -1.48 16 8 C 0.12 1.57 7.15 -2.53 -0.02 1.55 16 9 N -1.01 -16.34 3.40 -104.42 -0.35 -16.69 16 10 S 2.70 55.20 5.46 -107.50 -0.59 54.61 16 11 O -0.98 -22.27 16.91 -57.17 -0.97 -23.24 16 12 O -0.98 -21.38 15.89 -57.17 -0.91 -22.29 16 13 C -0.79 -17.78 5.99 -39.29 -0.24 -18.02 16 14 C 0.01 0.14 8.90 -39.66 -0.35 -0.22 16 15 C -0.24 -5.72 9.80 -38.87 -0.38 -6.10 16 16 C 0.14 3.56 5.58 -106.82 -0.60 2.96 16 17 C -0.44 -10.69 9.02 -37.74 -0.34 -11.03 16 18 H 0.09 2.05 7.96 -52.49 -0.42 1.63 16 19 C 0.08 1.76 4.99 -17.34 -0.09 1.67 16 20 N -0.75 -18.08 11.26 55.55 0.63 -17.46 16 21 Si 0.91 16.83 29.62 -169.99 -5.04 11.80 16 22 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 23 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 24 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 25 C -0.19 -4.74 8.74 -38.87 -0.34 -5.08 16 26 C -0.01 -0.27 9.49 -39.66 -0.38 -0.64 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.58 7.44 -51.93 -0.39 0.19 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.21 5.79 -51.93 -0.30 0.91 16 33 H 0.07 1.04 8.03 -51.93 -0.42 0.62 16 34 H 0.08 0.75 7.78 -51.93 -0.40 0.34 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.07 7.82 -51.93 -0.41 0.66 16 40 H 0.10 2.16 6.75 -52.49 -0.35 1.81 16 41 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 42 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 43 H 0.12 2.92 6.26 -52.49 -0.33 2.59 16 44 H 0.10 2.13 7.79 -52.48 -0.41 1.73 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -29.53 364.66 -11.66 -41.19 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.78 Total: 7.32 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: -3.14 Total: -40.75 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.27 Total: -34.15 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -1.88 Total: -45.52 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.04 Total: 11.80 kcal Atomic # 16 Polarization: 55.20 SS G_CDS: -0.59 Total: 54.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.53 -11.66 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396777852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.611 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds