Wall clock time and date at job start Tue Mar 31 2020 14:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47006 * 2 1 4 4 C 1.53001 * 109.47168 * 180.72419 * 3 2 1 5 5 H 1.09000 * 109.99459 * 305.73685 * 4 3 2 6 6 C 1.54315 * 109.77308 * 66.89018 * 4 3 2 7 7 C 1.55159 * 102.85902 * 141.88741 * 6 4 3 8 8 C 1.54906 * 101.58166 * 324.30230 * 7 6 4 9 9 N 1.47020 * 109.88134 * 184.64344 * 4 3 2 10 10 S 1.65595 * 125.65108 * 61.67442 * 9 4 3 11 11 O 1.42097 * 106.40434 * 149.38576 * 10 9 4 12 12 O 1.42108 * 106.40049 * 16.46697 * 10 9 4 13 13 C 1.76199 * 107.22248 * 262.92930 * 10 9 4 14 14 C 1.38635 * 119.75116 * 97.57071 * 13 10 9 15 15 C 1.37616 * 120.24834 * 180.02562 * 14 13 10 16 16 C 1.40712 * 119.74671 * 0.02562 * 15 14 13 17 17 C 1.41397 * 120.24582 * 180.02562 * 16 15 14 18 18 H 1.07993 * 119.99788 * 337.91697 * 17 16 15 19 19 C 1.39948 * 119.99989 * 158.19338 * 17 16 15 20 20 N 1.30825 * 119.99985 * 335.04887 * 19 17 16 21 21 Si 1.86797 * 119.99982 * 155.04400 * 19 17 16 22 22 H 1.48500 * 109.47083 * 94.95701 * 21 19 17 23 23 H 1.48494 * 109.47140 * 214.96095 * 21 19 17 24 24 H 1.48501 * 109.46800 * 334.95832 * 21 19 17 25 25 C 1.40720 * 119.51109 * 0.27159 * 16 15 14 26 26 C 1.37623 * 119.74300 * 359.47025 * 25 16 15 27 27 H 1.09003 * 109.46957 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47397 * 299.99538 * 1 2 3 29 29 H 1.09000 * 109.47673 * 60.00159 * 1 2 3 30 30 H 1.09001 * 109.47056 * 240.00567 * 2 1 3 31 31 H 1.08999 * 109.47176 * 119.99671 * 2 1 3 32 32 H 1.08999 * 109.46576 * 60.72318 * 3 2 1 33 33 H 1.09001 * 109.46880 * 300.72236 * 3 2 1 34 34 H 1.08997 * 110.92654 * 23.47223 * 6 4 3 35 35 H 1.08999 * 110.74128 * 260.21481 * 6 4 3 36 36 H 1.09006 * 111.00023 * 206.22897 * 7 6 4 37 37 H 1.08997 * 111.00678 * 82.38221 * 7 6 4 38 38 H 1.09004 * 110.36973 * 278.17232 * 8 7 6 39 39 H 1.09002 * 110.46373 * 155.89739 * 8 7 6 40 40 H 1.07999 * 119.87324 * 0.02562 * 14 13 10 41 41 H 1.08003 * 120.12625 * 179.97438 * 15 14 13 42 42 H 0.96999 * 119.99752 * 180.02562 * 20 19 17 43 43 H 1.07999 * 120.13031 * 179.70887 * 25 16 15 44 44 H 1.08003 * 119.87363 * 180.23334 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 -0.0182 5 1 3.9524 0.8409 0.8062 6 6 4.0759 0.8783 -1.3624 7 6 5.3092 1.7689 -1.6684 8 6 4.8458 3.1411 -1.1190 9 7 4.0711 2.8202 0.0935 10 16 3.8141 3.8400 1.3726 11 8 4.9530 4.6867 1.4460 12 8 3.3797 3.0263 2.4536 13 6 2.4517 4.8743 0.9497 14 6 1.1810 4.5589 1.4057 15 6 0.1096 5.3592 1.0811 16 6 0.3075 6.5009 0.2828 17 6 -0.7858 7.3309 -0.0566 18 1 -1.7913 6.9382 -0.0273 19 6 -0.5643 8.6596 -0.4360 20 7 0.5123 9.2842 -0.0330 21 14 -1.8057 9.5414 -1.5180 22 1 -2.7458 10.3125 -0.6654 23 1 -1.0938 10.4684 -2.4339 24 1 -2.5644 8.5440 -2.3147 25 6 1.6007 6.8078 -0.1795 26 6 2.6583 5.9961 0.1619 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6872 1.9525 0.8964 33 1 1.6660 1.9601 -0.8835 34 1 3.3196 0.9868 -2.1396 35 1 4.3709 -0.1656 -1.2562 36 1 5.4972 1.8206 -2.7408 37 1 6.1906 1.4121 -1.1356 38 1 4.2150 3.6486 -1.8489 39 1 5.7063 3.7608 -0.8665 40 1 1.0315 3.6818 2.0178 41 1 -0.8795 5.1114 1.4370 42 1 0.6656 10.2053 -0.2956 43 1 1.7632 7.6790 -0.7967 44 1 3.6523 6.2318 -0.1886 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396777852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:01 Heat of formation + Delta-G solvation = -97.381316 kcal Electronic energy + Delta-G solvation = -26099.329318 eV Core-core repulsion = 22527.339073 eV Total energy + Delta-G solvation = -3571.990244 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.84103 -39.39652 -38.22753 -36.83352 -35.86414 -35.44070 -32.13613 -31.78181 -31.34556 -30.61944 -27.64612 -26.40761 -23.44392 -23.09324 -22.96454 -22.53209 -21.42110 -19.77231 -19.44579 -18.76485 -18.10461 -17.32761 -17.00853 -16.43388 -15.92687 -15.83868 -15.31177 -15.03005 -14.84855 -14.69837 -14.41071 -14.15573 -14.06749 -13.98874 -13.59999 -13.48832 -13.19393 -13.07625 -13.02326 -12.95080 -12.92962 -12.66026 -12.54833 -12.49154 -12.07074 -11.98616 -11.79628 -11.72669 -11.57866 -11.47026 -11.34444 -11.25724 -11.17028 -9.92913 -9.78514 -9.58162 -8.96448 -6.65795 -0.39330 0.47824 1.03091 1.33313 1.40278 1.52332 2.08571 2.17261 2.48708 2.89911 3.35026 3.48900 3.65212 3.86545 3.95267 4.19440 4.23110 4.24789 4.28946 4.33099 4.49193 4.59748 4.67836 4.74930 4.81615 4.89780 4.97876 4.98920 5.01233 5.04812 5.08586 5.11100 5.13271 5.21972 5.27630 5.30700 5.42050 5.47667 5.50946 5.55158 5.57294 5.63532 5.76214 5.89401 6.11844 6.44370 6.64345 6.78453 8.00991 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.004134 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.881335 B = 6771.769301 C = 7431.779532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.146 4.146 4 C 0.145 3.855 5 H 0.075 0.925 6 C -0.114 4.114 7 C -0.118 4.118 8 C 0.101 3.899 9 N -1.011 6.011 10 S 2.728 3.272 11 O -1.007 7.007 12 O -0.997 6.997 13 C -0.800 4.800 14 C 0.005 3.995 15 C -0.258 4.258 16 C 0.112 3.888 17 C -0.464 4.464 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.789 5.789 21 Si 0.989 3.011 22 H -0.257 1.257 23 H -0.261 1.261 24 H -0.253 1.253 25 C -0.211 4.211 26 C -0.016 4.016 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.301 0.699 43 H 0.107 0.893 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 -13.595 -7.681 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.185 4.185 4 C 0.040 3.960 5 H 0.094 0.906 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.023 4.023 9 N -0.849 5.849 10 S 2.827 3.173 11 O -0.998 6.998 12 O -0.988 6.988 13 C -0.894 4.894 14 C -0.015 4.015 15 C -0.279 4.279 16 C 0.109 3.891 17 C -0.490 4.490 18 H 0.112 0.888 19 C -0.182 4.182 20 N -0.411 5.411 21 Si 0.808 3.192 22 H -0.182 1.182 23 H -0.185 1.185 24 H -0.176 1.176 25 C -0.231 4.231 26 C -0.036 4.036 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.101 -13.300 -6.791 15.486 hybrid contribution -1.093 1.381 -0.242 1.778 sum 3.008 -11.919 -7.033 14.162 Atomic orbital electron populations 1.21788 0.95970 1.02131 1.01330 1.21432 0.95834 0.94507 1.03211 1.22224 0.95272 0.99170 1.01822 1.21592 0.93293 0.80666 1.00459 0.90647 1.22735 0.97726 1.00489 0.94320 1.22772 0.98087 0.92234 1.02639 1.22283 0.94694 0.99821 0.85522 1.58620 1.66230 1.25004 1.35079 1.00058 0.73031 0.72008 0.72194 1.93441 1.51195 1.68495 1.86626 1.93428 1.83653 1.69359 1.52331 1.29595 1.15103 1.17617 1.27073 1.20334 0.91309 0.96331 0.93487 1.21182 0.98183 1.01031 1.07469 1.18139 0.93326 0.91093 0.86547 1.20231 0.95314 0.95710 1.37765 0.88811 1.27068 0.98264 0.98168 0.94723 1.69889 1.26616 1.12828 1.31721 0.85081 0.77895 0.78093 0.78150 1.18161 1.18547 1.17606 1.21221 0.93432 1.01875 1.06598 1.20347 0.97584 0.92242 0.93460 0.91091 0.94140 0.93020 0.89423 0.91581 0.93880 0.91743 0.89645 0.87662 0.87569 0.90002 0.91534 0.90904 0.86422 0.87238 0.88777 0.87527 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.11 -2.26 5.79 30.60 0.18 -2.08 16 3 C -0.15 -3.94 4.72 30.60 0.14 -3.80 16 4 C 0.15 3.67 2.83 45.34 0.13 3.80 16 5 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 6 C -0.11 -1.88 5.56 31.78 0.18 -1.70 16 7 C -0.12 -1.97 7.08 31.99 0.23 -1.74 16 8 C 0.10 2.59 7.15 86.85 0.62 3.21 16 9 N -1.01 -31.80 3.40 -484.29 -1.65 -33.44 16 10 S 2.73 112.39 5.46 -56.49 -0.31 112.08 16 11 O -1.01 -46.12 16.91 -128.00 -2.16 -48.29 16 12 O -1.00 -43.80 15.89 -128.00 -2.03 -45.83 16 13 C -0.80 -37.02 5.99 22.46 0.13 -36.89 16 14 C 0.01 0.24 8.90 22.22 0.20 0.44 16 15 C -0.26 -12.74 9.80 22.73 0.22 -12.52 16 16 C 0.11 5.93 5.58 -21.29 -0.12 5.81 16 17 C -0.46 -23.35 9.02 23.46 0.21 -23.14 16 18 H 0.09 4.44 7.96 -2.91 -0.02 4.42 16 19 C 0.04 1.81 4.99 85.26 0.43 2.23 16 20 N -0.79 -38.56 11.26 21.83 0.25 -38.31 16 21 Si 0.99 34.23 29.62 68.60 2.03 36.26 16 22 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 23 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 24 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 25 C -0.21 -11.03 8.74 22.73 0.20 -10.83 16 26 C -0.02 -0.79 9.49 22.22 0.21 -0.58 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.32 7.44 -2.39 -0.02 1.31 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.42 5.79 -2.39 -0.01 1.41 16 33 H 0.06 1.81 8.03 -2.39 -0.02 1.79 16 34 H 0.08 1.31 7.78 -2.39 -0.02 1.29 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.93 7.82 -2.39 -0.02 1.91 16 40 H 0.12 5.05 6.75 -2.91 -0.02 5.03 16 41 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 42 H 0.30 12.98 8.30 -92.71 -0.77 12.21 16 43 H 0.11 5.64 6.26 -2.91 -0.02 5.62 16 44 H 0.11 4.92 7.79 -2.91 -0.02 4.90 16 Total: -1.00 -65.74 364.66 0.78 -64.96 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.98 Total: 32.85 kcal Atomic # 6 Polarization: -83.94 SS G_CDS: 3.67 Total: -80.27 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.40 Total: -71.75 kcal Atomic # 8 Polarization: -89.92 SS G_CDS: -4.20 Total: -94.12 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Atomic # 16 Polarization: 112.39 SS G_CDS: -0.31 Total: 112.08 kcal Total: -65.74 0.78 -64.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396777852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.423 kcal (2) G-P(sol) polarization free energy of solvation -65.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds