Wall clock time and date at job start Tue Mar 31 2020 14:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46734 * 2 1 4 4 C 1.53009 * 109.46945 * 184.84559 * 3 2 1 5 5 H 1.09003 * 109.87105 * 55.06987 * 4 3 2 6 6 C 1.54324 * 109.87920 * 294.05635 * 4 3 2 7 7 C 1.55397 * 102.82805 * 218.48083 * 6 4 3 8 8 C 1.54910 * 101.66742 * 35.33763 * 7 6 4 9 9 N 1.47019 * 109.88053 * 176.08896 * 4 3 2 10 10 S 1.65600 * 125.64778 * 298.31760 * 9 4 3 11 11 O 1.42102 * 106.40128 * 208.72460 * 10 9 4 12 12 O 1.42094 * 106.40179 * 341.64398 * 10 9 4 13 13 C 1.76199 * 107.21629 * 95.18568 * 10 9 4 14 14 C 1.38633 * 119.74750 * 264.55689 * 13 10 9 15 15 C 1.37618 * 120.24539 * 179.76244 * 14 13 10 16 16 C 1.40716 * 119.74536 * 0.49286 * 15 14 13 17 17 C 1.41394 * 120.24198 * 179.78810 * 16 15 14 18 18 H 1.08001 * 120.00076 * 333.03730 * 17 16 15 19 19 C 1.39942 * 120.00115 * 153.04293 * 17 16 15 20 20 N 1.30822 * 120.00302 * 160.34487 * 19 17 16 21 21 Si 1.86805 * 119.99846 * 340.34713 * 19 17 16 22 22 H 1.48495 * 109.47485 * 91.12089 * 21 19 17 23 23 H 1.48502 * 109.46805 * 211.12050 * 21 19 17 24 24 H 1.48497 * 109.46897 * 331.11784 * 21 19 17 25 25 C 1.40712 * 119.51038 * 359.76108 * 16 15 14 26 26 C 1.37615 * 119.74697 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.46895 * 299.99642 * 1 2 3 28 28 H 1.09000 * 109.47398 * 60.00231 * 1 2 3 29 29 H 1.09003 * 109.46842 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46895 * 240.00358 * 2 1 3 31 31 H 1.09000 * 109.47250 * 120.00303 * 2 1 3 32 32 H 1.08997 * 109.47265 * 64.84900 * 3 2 1 33 33 H 1.08995 * 109.47568 * 304.84364 * 3 2 1 34 34 H 1.08998 * 110.72125 * 336.74962 * 6 4 3 35 35 H 1.09005 * 110.72134 * 100.02430 * 6 4 3 36 36 H 1.09004 * 110.89356 * 277.27173 * 7 6 4 37 37 H 1.08999 * 111.07410 * 153.48494 * 7 6 4 38 38 H 1.08999 * 110.37157 * 204.23835 * 8 7 6 39 39 H 1.09005 * 110.46198 * 81.95807 * 8 7 6 40 40 H 1.07998 * 119.87410 * 0.02562 * 14 13 10 41 41 H 1.08004 * 120.12820 * 180.27894 * 15 14 13 42 42 H 0.97003 * 120.00077 * 180.02562 * 20 19 17 43 43 H 1.07998 * 120.12349 * 180.02562 * 25 16 15 44 44 H 1.07998 * 119.87823 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5651 1.4443 -0.1219 5 1 3.8669 0.8817 -1.0053 6 6 4.1931 0.8162 1.1402 7 6 5.4478 1.7016 1.3784 8 6 4.9363 3.0953 0.9359 9 7 4.0575 2.8263 -0.2168 10 16 3.6872 3.9023 -1.4199 11 8 4.7986 4.7810 -1.5285 12 8 3.1954 3.1331 -2.5087 13 6 2.3354 4.8779 -0.8492 14 6 1.0396 4.5268 -1.1946 15 6 -0.0241 5.2786 -0.7505 16 6 0.2084 6.4134 0.0485 17 6 -0.8764 7.1960 0.5068 18 1 -1.7970 7.2258 -0.0571 19 6 -0.7572 7.9320 1.6911 20 7 -1.5680 8.9317 1.9244 21 14 0.5600 7.4869 2.9387 22 1 1.7942 8.2617 2.6534 23 1 0.0770 7.8107 4.3052 24 1 0.8556 6.0344 2.8495 25 6 1.5282 6.7632 0.3884 26 6 2.5763 5.9942 -0.0633 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.7492 1.9307 0.9302 33 1 1.6075 1.9808 -0.8434 34 1 3.5085 0.8830 1.9857 35 1 4.4785 -0.2193 0.9545 36 1 6.2789 1.3742 0.7537 37 1 5.7307 1.7054 2.4310 38 1 5.7715 3.7285 0.6366 39 1 4.3726 3.5674 1.7406 40 1 0.8639 3.6576 -1.8110 41 1 -1.0332 5.0008 -1.0170 42 1 -1.4851 9.4421 2.7451 43 1 1.7180 7.6319 1.0014 44 1 3.5902 6.2610 0.1960 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396777854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:05 Heat of formation + Delta-G solvation = -77.259690 kcal Electronic energy + Delta-G solvation = -26338.642879 eV Core-core repulsion = 22767.525174 eV Total energy + Delta-G solvation = -3571.117705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.85065 -37.85138 -36.65084 -35.23090 -34.52421 -34.03162 -30.92581 -30.76743 -29.93192 -29.68540 -25.76557 -25.45803 -22.20468 -21.93132 -21.69795 -21.09803 -20.43823 -18.43617 -17.75114 -17.49061 -16.74270 -16.10586 -15.46457 -15.15715 -14.86477 -14.19978 -13.94627 -13.79778 -13.67396 -13.46227 -13.27275 -13.06143 -12.89614 -12.67366 -12.48594 -12.14699 -12.03359 -11.75922 -11.55800 -11.48192 -11.34727 -11.28911 -11.14690 -11.04831 -10.90142 -10.87929 -10.75106 -10.65507 -10.58549 -10.33236 -9.91526 -9.77543 -9.35748 -8.70017 -8.15433 -7.95739 -7.37425 -4.93636 1.06738 2.03307 2.57071 2.88282 3.00254 3.07788 3.52480 3.69526 4.10314 4.39938 4.49416 4.59211 4.79581 5.01605 5.04031 5.12805 5.18188 5.18641 5.40699 5.43318 5.59893 5.67408 5.75909 5.79029 5.82702 5.83810 5.87997 5.88771 5.95768 6.00275 6.15167 6.26074 6.28110 6.31962 6.43902 6.45924 6.50907 6.55113 6.75940 6.89663 7.15634 7.22583 7.30214 7.57577 7.82038 7.99375 8.33475 8.41967 9.61311 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.004832 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.676607 B = 5793.480654 C = 6168.085316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.146 4.146 4 C 0.156 3.844 5 H 0.075 0.925 6 C -0.123 4.123 7 C -0.129 4.129 8 C 0.115 3.885 9 N -1.013 6.013 10 S 2.706 3.294 11 O -0.980 6.980 12 O -0.977 6.977 13 C -0.793 4.793 14 C 0.008 3.992 15 C -0.223 4.223 16 C 0.116 3.884 17 C -0.413 4.413 18 H 0.099 0.901 19 C 0.081 3.919 20 N -0.776 5.776 21 Si 0.921 3.079 22 H -0.263 1.263 23 H -0.287 1.287 24 H -0.242 1.242 25 C -0.260 4.260 26 C 0.017 3.983 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.294 0.706 43 H 0.108 0.892 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.817 -13.672 3.335 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.185 4.185 4 C 0.049 3.951 5 H 0.093 0.907 6 C -0.162 4.162 7 C -0.168 4.168 8 C -0.010 4.010 9 N -0.849 5.849 10 S 2.806 3.194 11 O -0.971 6.971 12 O -0.968 6.968 13 C -0.888 4.888 14 C -0.012 4.012 15 C -0.243 4.243 16 C 0.112 3.888 17 C -0.439 4.439 18 H 0.117 0.883 19 C -0.143 4.143 20 N -0.397 5.397 21 Si 0.746 3.254 22 H -0.189 1.189 23 H -0.214 1.214 24 H -0.165 1.165 25 C -0.280 4.280 26 C -0.003 4.003 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.125 0.875 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.112 -13.337 2.575 15.821 hybrid contribution -0.255 0.440 1.083 1.197 sum 7.857 -12.896 3.658 15.537 Atomic orbital electron populations 1.21777 0.95743 1.01215 1.02371 1.21431 0.96055 0.96224 1.01765 1.22247 0.94793 0.97704 1.03745 1.21275 0.93480 0.81797 0.98502 0.90719 1.22753 0.97029 0.98980 0.97433 1.22790 0.97717 0.94751 1.01540 1.21971 0.93237 0.97570 0.88224 1.58937 1.60787 1.24022 1.41108 1.00905 0.73968 0.72237 0.72244 1.93485 1.52465 1.65404 1.85731 1.93474 1.81983 1.71178 1.50132 1.29307 1.13428 1.17453 1.28641 1.20217 0.91143 0.96565 0.93257 1.21017 0.97189 0.98245 1.07866 1.17889 0.92163 0.89507 0.89204 1.19871 1.00676 1.17822 1.05566 0.88325 1.26415 0.96378 0.91767 0.99785 1.69683 1.33344 1.11514 1.25164 0.86206 0.79637 0.82371 0.77160 1.18858 1.21415 1.16546 1.21100 0.93099 1.03353 1.10429 1.20156 0.97572 0.91313 0.91233 0.92603 0.92439 0.93037 0.91972 0.92043 0.90849 0.90783 0.90463 0.90498 0.90847 0.90279 0.90248 0.91636 0.87276 0.87575 0.89540 0.87478 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.25 5.69 -26.73 -0.15 -1.41 16 3 C -0.15 -1.96 4.73 -26.73 -0.13 -2.09 16 4 C 0.16 2.02 2.84 -66.95 -0.19 1.82 16 5 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.12 -1.19 5.65 -24.77 -0.14 -1.33 16 7 C -0.13 -1.23 7.09 -24.45 -0.17 -1.41 16 8 C 0.12 1.48 7.14 -2.53 -0.02 1.46 16 9 N -1.01 -15.55 3.40 -104.41 -0.35 -15.90 16 10 S 2.71 52.06 5.45 -107.50 -0.59 51.48 16 11 O -0.98 -20.83 16.81 -57.17 -0.96 -21.79 16 12 O -0.98 -20.17 16.09 -57.17 -0.92 -21.09 16 13 C -0.79 -16.78 5.99 -39.29 -0.24 -17.01 16 14 C 0.01 0.17 8.75 -39.66 -0.35 -0.17 16 15 C -0.22 -5.02 9.80 -38.87 -0.38 -5.40 16 16 C 0.12 2.83 5.17 -106.83 -0.55 2.27 16 17 C -0.41 -10.38 9.57 -37.74 -0.36 -10.74 16 18 H 0.10 2.56 8.06 -52.49 -0.42 2.13 16 19 C 0.08 1.94 5.40 -17.34 -0.09 1.84 16 20 N -0.78 -18.87 13.93 55.55 0.77 -18.10 16 21 Si 0.92 19.28 24.54 -169.99 -4.17 15.11 16 22 H -0.26 -5.37 6.45 56.52 0.36 -5.00 16 23 H -0.29 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.24 -5.19 7.03 56.52 0.40 -4.79 16 25 C -0.26 -6.10 7.31 -38.88 -0.28 -6.38 16 26 C 0.02 0.38 9.49 -39.66 -0.38 0.00 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.56 7.59 -51.93 -0.39 0.17 16 32 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 33 H 0.07 1.15 5.49 -51.93 -0.29 0.86 16 34 H 0.08 0.72 7.79 -51.93 -0.40 0.32 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.01 7.81 -51.93 -0.41 0.61 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.11 2.11 6.56 -52.49 -0.34 1.76 16 41 H 0.11 2.21 8.06 -52.48 -0.42 1.79 16 42 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 43 H 0.11 2.46 4.32 -52.49 -0.23 2.23 16 44 H 0.11 2.09 7.72 -52.49 -0.41 1.68 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -28.80 358.36 -10.59 -39.39 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.71 Total: 5.33 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: -3.06 Total: -39.83 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.42 Total: -34.00 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.88 Total: -42.88 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.17 Total: 15.11 kcal Atomic # 16 Polarization: 52.06 SS G_CDS: -0.59 Total: 51.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.80 -10.59 -39.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396777854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.870 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds