Wall clock time and date at job start Tue Mar 31 2020 14:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46734 * 2 1 4 4 C 1.53009 * 109.46945 * 184.84559 * 3 2 1 5 5 H 1.09003 * 109.87105 * 55.06987 * 4 3 2 6 6 C 1.54324 * 109.87920 * 294.05635 * 4 3 2 7 7 C 1.55397 * 102.82805 * 218.48083 * 6 4 3 8 8 C 1.54910 * 101.66742 * 35.33763 * 7 6 4 9 9 N 1.47019 * 109.88053 * 176.08896 * 4 3 2 10 10 S 1.65600 * 125.64778 * 298.31760 * 9 4 3 11 11 O 1.42102 * 106.40128 * 208.72460 * 10 9 4 12 12 O 1.42094 * 106.40179 * 341.64398 * 10 9 4 13 13 C 1.76199 * 107.21629 * 95.18568 * 10 9 4 14 14 C 1.38633 * 119.74750 * 264.55689 * 13 10 9 15 15 C 1.37618 * 120.24539 * 179.76244 * 14 13 10 16 16 C 1.40716 * 119.74536 * 0.49286 * 15 14 13 17 17 C 1.41394 * 120.24198 * 179.78810 * 16 15 14 18 18 H 1.08001 * 120.00076 * 333.03730 * 17 16 15 19 19 C 1.39942 * 120.00115 * 153.04293 * 17 16 15 20 20 N 1.30822 * 120.00302 * 160.34487 * 19 17 16 21 21 Si 1.86805 * 119.99846 * 340.34713 * 19 17 16 22 22 H 1.48495 * 109.47485 * 91.12089 * 21 19 17 23 23 H 1.48502 * 109.46805 * 211.12050 * 21 19 17 24 24 H 1.48497 * 109.46897 * 331.11784 * 21 19 17 25 25 C 1.40712 * 119.51038 * 359.76108 * 16 15 14 26 26 C 1.37615 * 119.74697 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.46895 * 299.99642 * 1 2 3 28 28 H 1.09000 * 109.47398 * 60.00231 * 1 2 3 29 29 H 1.09003 * 109.46842 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46895 * 240.00358 * 2 1 3 31 31 H 1.09000 * 109.47250 * 120.00303 * 2 1 3 32 32 H 1.08997 * 109.47265 * 64.84900 * 3 2 1 33 33 H 1.08995 * 109.47568 * 304.84364 * 3 2 1 34 34 H 1.08998 * 110.72125 * 336.74962 * 6 4 3 35 35 H 1.09005 * 110.72134 * 100.02430 * 6 4 3 36 36 H 1.09004 * 110.89356 * 277.27173 * 7 6 4 37 37 H 1.08999 * 111.07410 * 153.48494 * 7 6 4 38 38 H 1.08999 * 110.37157 * 204.23835 * 8 7 6 39 39 H 1.09005 * 110.46198 * 81.95807 * 8 7 6 40 40 H 1.07998 * 119.87410 * 0.02562 * 14 13 10 41 41 H 1.08004 * 120.12820 * 180.27894 * 15 14 13 42 42 H 0.97003 * 120.00077 * 180.02562 * 20 19 17 43 43 H 1.07998 * 120.12349 * 180.02562 * 25 16 15 44 44 H 1.07998 * 119.87823 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5651 1.4443 -0.1219 5 1 3.8669 0.8817 -1.0053 6 6 4.1931 0.8162 1.1402 7 6 5.4478 1.7016 1.3784 8 6 4.9363 3.0953 0.9359 9 7 4.0575 2.8263 -0.2168 10 16 3.6872 3.9023 -1.4199 11 8 4.7986 4.7810 -1.5285 12 8 3.1954 3.1331 -2.5087 13 6 2.3354 4.8779 -0.8492 14 6 1.0396 4.5268 -1.1946 15 6 -0.0241 5.2786 -0.7505 16 6 0.2084 6.4134 0.0485 17 6 -0.8764 7.1960 0.5068 18 1 -1.7970 7.2258 -0.0571 19 6 -0.7572 7.9320 1.6911 20 7 -1.5680 8.9317 1.9244 21 14 0.5600 7.4869 2.9387 22 1 1.7942 8.2617 2.6534 23 1 0.0770 7.8107 4.3052 24 1 0.8556 6.0344 2.8495 25 6 1.5282 6.7632 0.3884 26 6 2.5763 5.9942 -0.0633 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.7492 1.9307 0.9302 33 1 1.6075 1.9808 -0.8434 34 1 3.5085 0.8830 1.9857 35 1 4.4785 -0.2193 0.9545 36 1 6.2789 1.3742 0.7537 37 1 5.7307 1.7054 2.4310 38 1 5.7715 3.7285 0.6366 39 1 4.3726 3.5674 1.7406 40 1 0.8639 3.6576 -1.8110 41 1 -1.0332 5.0008 -1.0170 42 1 -1.4851 9.4421 2.7451 43 1 1.7180 7.6319 1.0014 44 1 3.5902 6.2610 0.1960 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396777854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:04 Heat of formation + Delta-G solvation = -94.334783 kcal Electronic energy + Delta-G solvation = -26339.383311 eV Core-core repulsion = 22767.525174 eV Total energy + Delta-G solvation = -3571.858137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.85024 -39.63355 -38.26396 -36.86469 -35.84850 -35.44674 -32.69268 -31.79797 -31.69956 -30.63108 -27.56791 -26.41261 -23.75056 -23.17957 -22.89351 -22.55048 -21.42092 -19.88505 -19.54355 -18.95910 -18.26392 -17.38418 -17.01547 -16.48269 -16.05988 -15.79147 -15.56349 -15.14773 -14.85536 -14.72855 -14.61703 -14.40974 -14.26977 -14.05575 -13.86686 -13.55659 -13.20863 -13.10523 -13.05321 -12.93576 -12.81352 -12.68908 -12.60396 -12.50695 -12.24949 -11.98899 -11.79748 -11.72018 -11.68385 -11.50792 -11.44981 -11.29461 -11.07123 -10.02751 -9.84519 -9.73440 -9.17426 -6.82396 -0.45727 0.26018 0.76873 1.18627 1.31254 1.41000 1.98865 2.07566 2.38199 2.85063 3.27053 3.31856 3.62928 3.85375 3.93334 4.08024 4.13066 4.21195 4.27605 4.30254 4.49415 4.52958 4.58596 4.67635 4.74913 4.75127 4.80031 4.97076 4.99214 5.01020 5.07457 5.09849 5.10911 5.13153 5.26816 5.30103 5.34429 5.41252 5.41531 5.48762 5.51136 5.54580 5.65685 5.70958 5.98463 6.16278 6.48227 6.57650 7.87450 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.004832 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.676607 B = 5793.480654 C = 6168.085316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.149 4.149 4 C 0.145 3.855 5 H 0.078 0.922 6 C -0.115 4.115 7 C -0.119 4.119 8 C 0.100 3.900 9 N -1.011 6.011 10 S 2.728 3.272 11 O -0.999 6.999 12 O -0.992 6.992 13 C -0.795 4.795 14 C 0.011 3.989 15 C -0.238 4.238 16 C 0.105 3.895 17 C -0.450 4.450 18 H 0.072 0.928 19 C 0.052 3.948 20 N -0.809 5.809 21 Si 0.965 3.035 22 H -0.253 1.253 23 H -0.267 1.267 24 H -0.251 1.251 25 C -0.275 4.275 26 C 0.012 3.988 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.305 0.695 43 H 0.111 0.889 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.282 -16.250 4.686 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.188 4.188 4 C 0.040 3.960 5 H 0.096 0.904 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.024 4.024 9 N -0.850 5.850 10 S 2.826 3.174 11 O -0.990 6.990 12 O -0.983 6.983 13 C -0.887 4.887 14 C -0.009 4.009 15 C -0.258 4.258 16 C 0.102 3.898 17 C -0.477 4.477 18 H 0.090 0.910 19 C -0.168 4.168 20 N -0.432 5.432 21 Si 0.787 3.213 22 H -0.178 1.178 23 H -0.193 1.193 24 H -0.175 1.175 25 C -0.295 4.295 26 C -0.008 4.008 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.129 0.871 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.537 -15.879 3.924 19.457 hybrid contribution -0.922 1.079 0.539 1.518 sum 9.615 -14.800 4.463 18.205 Atomic orbital electron populations 1.21804 0.96138 1.02108 1.01329 1.21422 0.95681 0.94573 1.03250 1.22266 0.95334 0.99192 1.01997 1.21599 0.93255 0.80470 1.00677 0.90439 1.22784 0.96837 1.00129 0.95635 1.22809 0.97712 0.92051 1.03221 1.22313 0.92833 1.00069 0.87225 1.58636 1.60901 1.24229 1.41204 1.00162 0.72882 0.71960 0.72375 1.93459 1.52591 1.66613 1.86333 1.93450 1.82133 1.71192 1.51507 1.29872 1.14469 1.17577 1.26778 1.20442 0.90968 0.96627 0.92824 1.21221 0.98212 0.98207 1.08164 1.18054 0.92432 0.89835 0.89508 1.19822 1.00363 1.20461 1.07063 0.90986 1.26998 0.97969 0.91360 1.00516 1.69681 1.34789 1.12371 1.26347 0.85534 0.78023 0.81516 0.76209 1.17826 1.19307 1.17502 1.21243 0.93105 1.03945 1.11176 1.20452 0.98280 0.91156 0.90885 0.93257 0.93934 0.91179 0.91284 0.89643 0.91787 0.93522 0.89787 0.87724 0.89953 0.87681 0.90456 0.91427 0.85556 0.86841 0.88409 0.87140 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.11 -2.10 5.69 30.59 0.17 -1.93 16 3 C -0.15 -3.74 4.73 30.60 0.14 -3.59 16 4 C 0.15 3.35 2.84 45.34 0.13 3.48 16 5 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 6 C -0.12 -1.72 5.65 31.87 0.18 -1.54 16 7 C -0.12 -1.75 7.09 32.07 0.23 -1.53 16 8 C 0.10 2.28 7.14 86.85 0.62 2.90 16 9 N -1.01 -28.81 3.40 -484.24 -1.65 -30.45 16 10 S 2.73 101.45 5.45 -56.49 -0.31 101.14 16 11 O -1.00 -41.07 16.81 -128.00 -2.15 -43.22 16 12 O -0.99 -39.90 16.09 -128.00 -2.06 -41.96 16 13 C -0.79 -33.10 5.99 22.46 0.13 -32.97 16 14 C 0.01 0.47 8.75 22.22 0.19 0.66 16 15 C -0.24 -10.97 9.80 22.73 0.22 -10.75 16 16 C 0.11 5.25 5.17 -21.29 -0.11 5.14 16 17 C -0.45 -23.72 9.57 23.46 0.22 -23.50 16 18 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 19 C 0.05 2.59 5.40 85.26 0.46 3.05 16 20 N -0.81 -40.47 13.93 21.83 0.30 -40.16 16 21 Si 0.96 39.39 24.54 68.60 1.68 41.07 16 22 H -0.25 -9.85 6.45 99.48 0.64 -9.20 16 23 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.25 -10.53 7.03 99.48 0.70 -9.83 16 25 C -0.27 -12.93 7.31 22.73 0.17 -12.76 16 26 C 0.01 0.52 9.49 22.22 0.21 0.73 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.22 7.59 -2.39 -0.02 1.20 16 32 H 0.06 1.69 8.05 -2.39 -0.02 1.68 16 33 H 0.05 1.41 5.49 -2.39 -0.01 1.40 16 34 H 0.08 1.18 7.79 -2.39 -0.02 1.17 16 35 H 0.10 1.05 8.14 -2.38 -0.02 1.04 16 36 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.79 7.81 -2.39 -0.02 1.77 16 39 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.13 4.86 6.56 -2.91 -0.02 4.84 16 41 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 42 H 0.30 13.43 8.30 -92.71 -0.77 12.67 16 43 H 0.11 5.04 4.32 -2.91 -0.01 5.03 16 44 H 0.13 4.83 7.72 -2.91 -0.02 4.81 16 Total: -1.00 -63.19 358.36 0.43 -62.76 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.92 Total: 25.86 kcal Atomic # 6 Polarization: -78.74 SS G_CDS: 3.69 Total: -75.05 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -1.34 Total: -70.62 kcal Atomic # 8 Polarization: -80.96 SS G_CDS: -4.21 Total: -85.18 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 1.68 Total: 41.07 kcal Atomic # 16 Polarization: 101.45 SS G_CDS: -0.31 Total: 101.14 kcal Total: -63.19 0.43 -62.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396777854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.573 kcal (2) G-P(sol) polarization free energy of solvation -63.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds