Wall clock time and date at job start Tue Mar 31 2020 14:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35969 * 117.00135 * 2 1 4 4 C 1.38565 * 120.08447 * 0.27126 * 3 2 1 5 5 C 1.38234 * 120.01398 * 180.30209 * 4 3 2 6 6 C 1.38275 * 120.18201 * 359.71948 * 5 4 3 7 7 C 1.38193 * 120.16283 * 359.97438 * 6 5 4 8 8 C 1.38728 * 119.98923 * 0.02562 * 7 6 5 9 9 N 1.40123 * 120.09341 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99794 * 333.94453 * 9 8 7 11 11 O 1.21292 * 120.00157 * 4.46651 * 10 9 8 12 12 C 1.50701 * 119.99758 * 184.46788 * 10 9 8 13 13 H 1.08999 * 109.47021 * 40.00237 * 12 10 9 14 14 S 1.81398 * 109.46960 * 159.99864 * 12 10 9 15 15 C 1.81399 * 102.99921 * 189.16616 * 14 12 10 16 16 C 1.50702 * 109.47435 * 174.96062 * 15 14 12 17 17 H 1.08004 * 119.99729 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00365 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99711 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00101 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46911 * 90.00431 * 20 18 16 22 22 H 1.48495 * 109.47007 * 210.00424 * 20 18 16 23 23 H 1.48502 * 109.47089 * 330.00666 * 20 18 16 24 24 C 1.52997 * 109.47148 * 279.99920 * 12 10 9 25 25 C 1.52998 * 109.47118 * 65.42085 * 24 12 10 26 26 C 1.53000 * 109.46971 * 305.41889 * 24 12 10 27 27 H 1.09005 * 109.47443 * 300.00290 * 1 2 3 28 28 H 1.09005 * 109.47078 * 60.00584 * 1 2 3 29 29 H 1.09001 * 109.47488 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.98944 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.90876 * 179.74602 * 5 4 3 32 32 H 1.07999 * 119.91820 * 180.02562 * 6 5 4 33 33 H 1.08009 * 120.00634 * 179.97438 * 7 6 5 34 34 H 0.96991 * 119.99625 * 153.94020 * 9 8 7 35 35 H 1.08999 * 109.47121 * 294.95876 * 15 14 12 36 36 H 1.09002 * 109.47460 * 54.96121 * 15 14 12 37 37 H 0.97001 * 119.99747 * 179.97438 * 19 18 16 38 38 H 1.09004 * 109.47162 * 185.42352 * 24 12 10 39 39 H 1.08995 * 109.47185 * 294.67032 * 25 24 12 40 40 H 1.09001 * 109.47113 * 174.67072 * 25 24 12 41 41 H 1.09000 * 109.47341 * 54.67516 * 25 24 12 42 42 H 1.09005 * 109.47149 * 179.97438 * 26 24 12 43 43 H 1.08993 * 109.47546 * 299.99851 * 26 24 12 44 44 H 1.08999 * 109.46845 * 60.00732 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3747 0.0057 5 6 1.9224 3.6056 -0.0006 6 6 3.3031 3.6806 -0.0068 7 6 4.0613 2.5253 -0.0061 8 6 3.4372 1.2863 0.0002 9 7 4.2039 0.1134 0.0015 10 6 5.4485 0.1214 -0.5156 11 8 5.9356 1.1606 -0.9080 12 6 6.2349 -1.1609 -0.6062 13 1 5.5730 -1.9725 -0.9084 14 16 7.5592 -0.9727 -1.8316 15 6 8.1990 -2.6614 -2.0035 16 6 9.2396 -2.6959 -3.0931 17 1 9.4911 -1.7921 -3.6283 18 6 9.8712 -3.8808 -3.4060 19 7 9.5652 -4.9812 -2.7539 20 14 11.1605 -3.9236 -4.7570 21 1 12.4986 -3.6527 -4.1730 22 1 11.1620 -5.2634 -5.3975 23 1 10.8457 -2.8888 -5.7746 24 6 6.8455 -1.4824 0.7593 25 6 5.7273 -1.7740 1.7620 26 6 7.6669 -0.2864 1.2449 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 0.2147 2.3196 0.0105 31 1 1.3339 4.5112 -0.0004 32 1 3.7902 4.6446 -0.0113 33 1 5.1397 2.5868 -0.0113 34 1 3.8388 -0.7041 0.3745 35 1 8.6483 -2.9773 -1.0620 36 1 7.3817 -3.3353 -2.2603 37 1 10.0093 -5.8150 -2.9743 38 1 7.4920 -2.3556 0.6718 39 1 5.1373 -0.8715 1.9209 40 1 6.1626 -2.0948 2.7085 41 1 5.0855 -2.5636 1.3712 42 1 8.1016 -0.5152 2.2180 43 1 8.4635 -0.0787 0.5306 44 1 7.0204 0.5868 1.3325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413012859.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:53 Heat of formation + Delta-G solvation = -70.519768 kcal Electronic energy + Delta-G solvation = -25099.186295 eV Core-core repulsion = 21528.360855 eV Total energy + Delta-G solvation = -3570.825440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.01726 -40.54682 -38.26574 -36.98733 -35.83238 -35.28210 -31.30613 -30.88748 -30.66224 -29.13320 -28.14937 -27.95955 -25.30884 -24.17250 -23.21379 -22.20336 -20.97337 -19.46316 -18.79337 -18.30847 -18.07870 -17.32575 -17.07278 -16.62331 -16.49795 -16.32293 -15.76188 -15.53138 -15.17666 -15.00948 -14.85720 -14.55364 -14.41445 -14.25419 -14.05088 -13.71125 -13.55885 -13.11146 -13.06740 -12.76128 -12.61055 -12.57978 -12.34486 -12.22848 -12.13467 -12.00488 -11.99697 -11.74174 -11.61386 -11.52723 -10.74582 -10.69072 -10.55872 -9.59676 -8.82429 -8.45818 -8.33116 -6.45754 0.24468 0.42142 0.67182 1.39635 1.40590 1.49827 1.53537 1.91190 2.01017 2.31824 2.36916 2.82470 3.01224 3.46796 3.58662 3.81588 3.90542 4.01308 4.07916 4.27699 4.31167 4.40070 4.43822 4.49012 4.53249 4.56115 4.69272 4.77432 4.81631 4.89594 4.91955 4.93479 4.97493 5.09937 5.13838 5.26693 5.30788 5.39182 5.46238 5.57201 5.60320 5.84083 5.89729 6.27327 6.40116 6.60730 6.98320 7.21775 8.78434 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019160 B = 0.002906 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.010551 B = 9631.777737 C = 9726.663994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.092 3.908 4 C -0.188 4.188 5 C -0.095 4.095 6 C -0.143 4.143 7 C -0.121 4.121 8 C 0.095 3.905 9 N -0.647 5.647 10 C 0.547 3.453 11 O -0.530 6.530 12 C -0.079 4.079 13 H 0.110 0.890 14 S -0.256 6.256 15 C 0.089 3.911 16 C -0.537 4.537 17 H 0.058 0.942 18 C 0.019 3.981 19 N -0.921 5.921 20 Si 0.973 3.027 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.268 1.268 24 C -0.082 4.082 25 C -0.149 4.149 26 C -0.143 4.143 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.423 0.577 35 H 0.022 0.978 36 H 0.015 0.985 37 H 0.271 0.729 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.810 11.435 11.535 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.044 3.956 4 C -0.207 4.207 5 C -0.114 4.114 6 C -0.162 4.162 7 C -0.141 4.141 8 C 0.001 3.999 9 N -0.294 5.294 10 C 0.333 3.667 11 O -0.406 6.406 12 C -0.211 4.211 13 H 0.128 0.872 14 S -0.027 6.027 15 C -0.059 4.059 16 C -0.576 4.576 17 H 0.076 0.924 18 C -0.182 4.182 19 N -0.560 5.560 20 Si 0.796 3.204 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.193 1.193 24 C -0.102 4.102 25 C -0.207 4.207 26 C -0.200 4.200 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.178 0.822 31 H 0.175 0.825 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.262 0.738 35 H 0.040 0.960 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.989 12.655 10.706 25.968 hybrid contribution 0.143 -1.827 -0.065 1.834 sum -19.846 10.828 10.642 24.987 Atomic orbital electron populations 1.23353 0.76006 1.05570 1.02468 1.85996 1.23790 1.26168 1.89072 1.18823 0.89795 0.86215 1.00734 1.21406 1.01209 0.91098 1.06973 1.21318 0.94208 0.98183 0.97643 1.21278 0.94545 0.98148 1.02225 1.21554 1.01858 0.90866 0.99811 1.17426 0.87777 0.87035 1.07686 1.43272 1.14021 1.12578 1.59487 1.19833 0.81291 0.89619 0.75908 1.90622 1.69274 1.33139 1.47570 1.23458 0.98762 0.98728 1.00183 0.87211 1.87044 1.42746 1.19198 1.53685 1.20817 0.97491 0.88272 0.99293 1.20942 1.22004 0.95557 1.19089 0.92430 1.25831 0.98933 0.94490 0.98972 1.70042 1.43399 1.00203 1.42361 0.85331 0.78655 0.77876 0.78532 1.19387 1.19816 1.19293 1.21280 0.98213 0.99729 0.91017 1.22028 0.97453 1.02219 0.99041 1.21847 1.00098 0.96470 1.01630 0.91034 0.91792 0.86595 0.82189 0.82524 0.84048 0.84613 0.73848 0.95968 0.96668 0.92032 0.90896 0.91925 0.90051 0.90943 0.90562 0.93062 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.52 9.93 -93.20 -0.93 -7.44 16 3 C 0.09 2.01 6.70 22.60 0.15 2.16 16 4 C -0.19 -3.12 9.04 22.35 0.20 -2.92 16 5 C -0.09 -1.55 10.04 22.28 0.22 -1.32 16 6 C -0.14 -3.02 10.04 22.27 0.22 -2.80 16 7 C -0.12 -3.35 8.80 22.38 0.20 -3.15 16 8 C 0.10 2.58 6.46 38.19 0.25 2.82 16 9 N -0.65 -17.73 4.31 -303.14 -1.31 -19.04 16 10 C 0.55 18.59 5.13 87.66 0.45 19.04 16 11 O -0.53 -21.28 12.68 -3.07 -0.04 -21.32 16 12 C -0.08 -2.81 2.39 29.85 0.07 -2.74 16 13 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 14 S -0.26 -11.96 19.12 -56.49 -1.08 -13.04 16 15 C 0.09 4.77 5.41 71.24 0.39 5.15 16 16 C -0.54 -31.34 9.13 25.60 0.23 -31.11 16 17 H 0.06 3.40 7.71 -2.91 -0.02 3.38 16 18 C 0.02 1.07 5.46 84.65 0.46 1.53 16 19 N -0.92 -54.02 13.29 21.45 0.28 -53.74 16 20 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 C -0.08 -2.50 2.65 -10.80 -0.03 -2.53 16 25 C -0.15 -3.23 8.17 71.98 0.59 -2.64 16 26 C -0.14 -4.45 8.66 71.98 0.62 -3.83 16 27 H 0.07 0.49 7.65 -2.38 -0.02 0.47 16 28 H 0.06 0.55 7.68 -2.38 -0.02 0.53 16 29 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.16 1.59 6.30 -2.91 -0.02 1.57 16 31 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.14 4.43 5.54 -2.91 -0.02 4.42 16 34 H 0.42 9.60 6.97 -92.72 -0.65 8.96 16 35 H 0.02 1.23 7.38 -2.39 -0.02 1.21 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.07 2.52 7.12 -2.38 -0.02 2.51 16 39 H 0.06 1.29 6.29 -2.39 -0.02 1.27 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.05 1.89 7.15 -2.39 -0.02 1.87 16 44 H 0.05 1.50 6.88 -2.39 -0.02 1.48 16 Total: -1.00 -71.78 368.04 4.47 -67.31 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.36 Total: 21.89 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 5.14 Total: -21.01 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -1.02 Total: -72.78 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.96 Total: -28.76 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -11.96 SS G_CDS: -1.08 Total: -13.04 kcal Total: -71.78 4.47 -67.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012859.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.208 kcal (2) G-P(sol) polarization free energy of solvation -71.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds