Wall clock time and date at job start Tue Mar 31 2020 14:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35974 * 116.99875 * 2 1 4 4 C 1.38552 * 120.08189 * 0.25678 * 3 2 1 5 5 C 1.38249 * 120.01409 * 180.29641 * 4 3 2 6 6 C 1.38282 * 120.17609 * 359.69911 * 5 4 3 7 7 C 1.38195 * 120.16630 * 0.02666 * 6 5 4 8 8 C 1.38724 * 119.98307 * 359.97438 * 7 6 5 9 9 N 1.40122 * 120.08926 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99779 * 340.23323 * 9 8 7 11 11 O 1.21291 * 120.00054 * 354.68312 * 10 9 8 12 12 C 1.50703 * 119.99969 * 174.41370 * 10 9 8 13 13 H 1.09005 * 109.46834 * 325.26719 * 12 10 9 14 14 S 1.81403 * 109.47227 * 205.27350 * 12 10 9 15 15 C 1.81390 * 103.00127 * 176.07811 * 14 12 10 16 16 C 1.50705 * 109.47148 * 185.27764 * 15 14 12 17 17 H 1.08001 * 119.99938 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00148 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99904 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46813 * 60.00154 * 20 18 16 22 22 H 1.48502 * 109.47244 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46872 * 300.00198 * 20 18 16 24 24 C 1.52991 * 109.47363 * 85.27024 * 12 10 9 25 25 C 1.53006 * 109.47342 * 298.37189 * 24 12 10 26 26 C 1.52995 * 109.47445 * 58.37663 * 24 12 10 27 27 H 1.08997 * 109.47315 * 299.99706 * 1 2 3 28 28 H 1.08996 * 109.47202 * 59.99705 * 1 2 3 29 29 H 1.08996 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99641 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.90936 * 179.72185 * 5 4 3 32 32 H 1.07998 * 119.91531 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.00833 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00350 * 160.22761 * 9 8 7 35 35 H 1.08999 * 109.47510 * 305.27825 * 15 14 12 36 36 H 1.09006 * 109.47273 * 65.28103 * 15 14 12 37 37 H 0.96999 * 119.99938 * 179.97438 * 19 18 16 38 38 H 1.09008 * 109.47020 * 178.37417 * 24 12 10 39 39 H 1.09000 * 109.46671 * 60.00358 * 25 24 12 40 40 H 1.08998 * 109.47110 * 179.97438 * 25 24 12 41 41 H 1.09000 * 109.47164 * 300.00340 * 25 24 12 42 42 H 1.09003 * 109.47294 * 54.94695 * 26 24 12 43 43 H 1.09001 * 109.47566 * 174.94673 * 26 24 12 44 44 H 1.08997 * 109.47095 * 294.94852 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 0.0054 5 6 1.9224 3.6057 -0.0008 6 6 3.3031 3.6807 -0.0061 7 6 4.0614 2.5254 -0.0058 8 6 3.4372 1.2865 0.0004 9 7 4.2039 0.1136 0.0002 10 6 5.4902 0.1495 -0.4004 11 8 5.9566 1.1743 -0.8514 12 6 6.3508 -1.0820 -0.2823 13 1 6.0687 -1.6380 0.6118 14 16 8.0937 -0.5928 -0.1653 15 6 8.9453 -2.1743 0.0877 16 6 10.4104 -1.9220 0.3353 17 1 10.7911 -0.9113 0.3395 18 6 11.2648 -2.9814 0.5553 19 7 10.8015 -4.2123 0.5486 20 14 13.0808 -2.6688 0.8614 21 1 13.2403 -1.8221 2.0710 22 1 13.7783 -3.9635 1.0674 23 1 13.6677 -1.9721 -0.3114 24 6 6.1505 -1.9644 -1.5160 25 6 4.6889 -2.4103 -1.5923 26 6 6.5079 -1.1707 -2.7742 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2148 2.3195 0.0100 31 1 1.3338 4.5112 -0.0012 32 1 3.7902 4.6446 -0.0105 33 1 5.1396 2.5869 -0.0103 34 1 3.8089 -0.7241 0.2884 35 1 8.5142 -2.6856 0.9484 36 1 8.8287 -2.7959 -0.8001 37 1 11.4027 -4.9577 0.7031 38 1 6.7946 -2.8410 -1.4442 39 1 4.0450 -1.5338 -1.6641 40 1 4.5461 -3.0386 -2.4715 41 1 4.4343 -2.9758 -0.6959 42 1 7.5201 -0.7771 -2.6803 43 1 6.4518 -1.8246 -3.6445 44 1 5.8067 -0.3450 -2.8944 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:56 Heat of formation + Delta-G solvation = -51.334753 kcal Electronic energy + Delta-G solvation = -25130.279114 eV Core-core repulsion = 21560.285598 eV Total energy + Delta-G solvation = -3569.993516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96968 -39.54454 -37.42629 -35.68413 -34.75063 -33.13654 -30.37990 -30.00509 -28.54301 -27.97272 -27.35512 -26.87651 -23.45667 -22.91199 -22.35117 -21.05345 -19.71806 -18.55041 -17.46796 -17.01296 -16.47983 -16.12666 -15.80738 -15.64359 -15.37133 -14.89068 -14.52859 -14.27121 -14.18740 -13.87106 -13.59473 -13.36041 -12.95257 -12.82065 -12.37643 -12.35288 -12.20387 -12.03628 -11.89952 -11.76423 -11.49109 -11.34563 -10.99181 -10.91695 -10.82422 -10.75608 -10.69602 -10.49799 -9.89444 -9.61661 -9.41590 -8.76616 -8.69076 -8.60142 -7.85227 -6.62032 -6.19230 -4.23199 1.16603 1.28364 2.24719 2.74651 2.96124 3.20059 3.29363 3.32165 3.36913 3.72553 3.81680 4.36355 4.59452 4.71486 4.73688 4.84841 4.89280 4.90363 5.08053 5.15811 5.18091 5.20269 5.29030 5.31158 5.46286 5.53061 5.71099 5.74239 5.89560 5.96525 6.04454 6.10266 6.14183 6.27316 6.37281 6.47094 6.50296 6.72823 6.77146 7.07225 7.12132 7.18118 7.38473 7.75364 8.01370 8.18577 8.78461 9.39865 10.91982 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.002930 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.725924 B = 9552.659147 C =10196.975686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.089 3.911 4 C -0.189 4.189 5 C -0.108 4.108 6 C -0.131 4.131 7 C -0.106 4.106 8 C 0.133 3.867 9 N -0.663 5.663 10 C 0.543 3.457 11 O -0.495 6.495 12 C -0.090 4.090 13 H 0.098 0.902 14 S -0.230 6.230 15 C 0.078 3.922 16 C -0.511 4.511 17 H 0.067 0.933 18 C 0.067 3.933 19 N -0.893 5.893 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.085 4.085 25 C -0.155 4.155 26 C -0.150 4.150 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.164 0.836 34 H 0.414 0.586 35 H 0.034 0.966 36 H 0.039 0.961 37 H 0.266 0.734 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.621 7.990 -1.643 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.235 6.235 3 C 0.042 3.958 4 C -0.208 4.208 5 C -0.127 4.127 6 C -0.150 4.150 7 C -0.126 4.126 8 C 0.037 3.963 9 N -0.308 5.308 10 C 0.330 3.670 11 O -0.369 6.369 12 C -0.222 4.222 13 H 0.116 0.884 14 S -0.001 6.001 15 C -0.069 4.069 16 C -0.551 4.551 17 H 0.085 0.915 18 C -0.137 4.137 19 N -0.531 5.531 20 Si 0.733 3.267 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.106 4.106 25 C -0.214 4.214 26 C -0.208 4.208 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.181 0.819 34 H 0.251 0.749 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.629 9.317 -1.989 23.634 hybrid contribution -0.231 -1.606 0.501 1.698 sum -21.860 7.711 -1.488 23.228 Atomic orbital electron populations 1.23018 0.78237 1.03883 1.01257 1.85997 1.21479 1.26572 1.89403 1.18645 0.90267 0.84998 1.01936 1.20982 0.99618 0.91855 1.08326 1.20901 0.94752 0.96799 1.00294 1.21042 0.93545 0.98372 1.02063 1.21691 1.02907 0.89506 0.98533 1.17236 0.86767 0.87502 1.04791 1.43565 1.11550 1.10276 1.65415 1.20082 0.80943 0.89732 0.76201 1.90608 1.72309 1.31917 1.42064 1.23400 0.99353 0.96925 1.02519 0.88382 1.87052 0.96366 1.21387 1.95254 1.21169 0.97455 0.88414 0.99827 1.20606 0.90611 0.93750 1.50119 0.91499 1.24942 0.99302 0.94700 0.94789 1.69943 1.35925 0.98347 1.48897 0.86421 0.83694 0.77489 0.79123 1.19894 1.21087 1.19870 1.21278 0.97412 0.98302 0.93571 1.22061 0.95812 1.01372 1.02168 1.21956 1.04083 0.99236 0.95523 0.92716 0.92722 0.88255 0.85374 0.85946 0.85556 0.81870 0.74893 0.94806 0.94301 0.92474 0.89101 0.92498 0.91935 0.92477 0.89779 0.92956 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.31 9.86 -19.66 -0.19 -3.50 16 3 C 0.09 1.04 6.70 -39.07 -0.26 0.77 16 4 C -0.19 -1.86 9.04 -39.46 -0.36 -2.21 16 5 C -0.11 -1.06 10.04 -39.56 -0.40 -1.46 16 6 C -0.13 -1.50 10.04 -39.58 -0.40 -1.89 16 7 C -0.11 -1.49 8.79 -39.42 -0.35 -1.84 16 8 C 0.13 1.82 6.52 -83.49 -0.54 1.28 16 9 N -0.66 -9.10 4.30 -9.75 -0.04 -9.14 16 10 C 0.54 8.95 5.11 -10.98 -0.06 8.90 16 11 O -0.50 -9.43 12.54 5.55 0.07 -9.36 16 12 C -0.09 -1.55 2.45 -27.89 -0.07 -1.61 16 13 H 0.10 1.56 8.14 -51.92 -0.42 1.13 16 14 S -0.23 -5.05 18.92 -107.50 -2.03 -7.09 16 15 C 0.08 1.99 5.26 36.01 0.19 2.18 16 16 C -0.51 -14.32 9.13 -34.44 -0.31 -14.64 16 17 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 18 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 19 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 20 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.09 -1.33 2.64 -90.62 -0.24 -1.56 16 25 C -0.16 -1.90 8.40 37.16 0.31 -1.59 16 26 C -0.15 -2.43 8.59 37.15 0.32 -2.11 16 27 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 28 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.16 2.62 5.42 -52.49 -0.28 2.34 16 34 H 0.41 4.88 7.32 -40.82 -0.30 4.58 16 35 H 0.03 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.04 1.02 7.31 -51.92 -0.38 0.64 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.09 1.55 6.94 -51.92 -0.36 1.19 16 39 H 0.06 0.69 6.19 -51.93 -0.32 0.37 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.56 6.81 -51.93 -0.35 1.21 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.81 7.10 -51.93 -0.37 0.44 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -31.36 367.43 -8.63 -39.99 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.42 Total: 4.97 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.27 Total: -12.85 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.69 Total: -34.06 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.12 Total: -12.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -5.05 SS G_CDS: -2.03 Total: -7.09 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.36 -8.63 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.342 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds