Wall clock time and date at job start Tue Mar 31 2020 14:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35974 * 116.99875 * 2 1 4 4 C 1.38552 * 120.08189 * 0.25678 * 3 2 1 5 5 C 1.38249 * 120.01409 * 180.29641 * 4 3 2 6 6 C 1.38282 * 120.17609 * 359.69911 * 5 4 3 7 7 C 1.38195 * 120.16630 * 0.02666 * 6 5 4 8 8 C 1.38724 * 119.98307 * 359.97438 * 7 6 5 9 9 N 1.40122 * 120.08926 * 179.97438 * 8 7 6 10 10 C 1.34776 * 119.99779 * 340.23323 * 9 8 7 11 11 O 1.21291 * 120.00054 * 354.68312 * 10 9 8 12 12 C 1.50703 * 119.99969 * 174.41370 * 10 9 8 13 13 H 1.09005 * 109.46834 * 325.26719 * 12 10 9 14 14 S 1.81403 * 109.47227 * 205.27350 * 12 10 9 15 15 C 1.81390 * 103.00127 * 176.07811 * 14 12 10 16 16 C 1.50705 * 109.47148 * 185.27764 * 15 14 12 17 17 H 1.08001 * 119.99938 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00148 * 180.02562 * 16 15 14 19 19 N 1.31524 * 119.99904 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46813 * 60.00154 * 20 18 16 22 22 H 1.48502 * 109.47244 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46872 * 300.00198 * 20 18 16 24 24 C 1.52991 * 109.47363 * 85.27024 * 12 10 9 25 25 C 1.53006 * 109.47342 * 298.37189 * 24 12 10 26 26 C 1.52995 * 109.47445 * 58.37663 * 24 12 10 27 27 H 1.08997 * 109.47315 * 299.99706 * 1 2 3 28 28 H 1.08996 * 109.47202 * 59.99705 * 1 2 3 29 29 H 1.08996 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99641 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.90936 * 179.72185 * 5 4 3 32 32 H 1.07998 * 119.91531 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.00833 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00350 * 160.22761 * 9 8 7 35 35 H 1.08999 * 109.47510 * 305.27825 * 15 14 12 36 36 H 1.09006 * 109.47273 * 65.28103 * 15 14 12 37 37 H 0.96999 * 119.99938 * 179.97438 * 19 18 16 38 38 H 1.09008 * 109.47020 * 178.37417 * 24 12 10 39 39 H 1.09000 * 109.46671 * 60.00358 * 25 24 12 40 40 H 1.08998 * 109.47110 * 179.97438 * 25 24 12 41 41 H 1.09000 * 109.47164 * 300.00340 * 25 24 12 42 42 H 1.09003 * 109.47294 * 54.94695 * 26 24 12 43 43 H 1.09001 * 109.47566 * 174.94673 * 26 24 12 44 44 H 1.08997 * 109.47095 * 294.94852 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 0.0054 5 6 1.9224 3.6057 -0.0008 6 6 3.3031 3.6807 -0.0061 7 6 4.0614 2.5254 -0.0058 8 6 3.4372 1.2865 0.0004 9 7 4.2039 0.1136 0.0002 10 6 5.4902 0.1495 -0.4004 11 8 5.9566 1.1743 -0.8514 12 6 6.3508 -1.0820 -0.2823 13 1 6.0687 -1.6380 0.6118 14 16 8.0937 -0.5928 -0.1653 15 6 8.9453 -2.1743 0.0877 16 6 10.4104 -1.9220 0.3353 17 1 10.7911 -0.9113 0.3395 18 6 11.2648 -2.9814 0.5553 19 7 10.8015 -4.2123 0.5486 20 14 13.0808 -2.6688 0.8614 21 1 13.2403 -1.8221 2.0710 22 1 13.7783 -3.9635 1.0674 23 1 13.6677 -1.9721 -0.3114 24 6 6.1505 -1.9644 -1.5160 25 6 4.6889 -2.4103 -1.5923 26 6 6.5079 -1.1707 -2.7742 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2148 2.3195 0.0100 31 1 1.3338 4.5112 -0.0012 32 1 3.7902 4.6446 -0.0105 33 1 5.1396 2.5869 -0.0103 34 1 3.8089 -0.7241 0.2884 35 1 8.5142 -2.6856 0.9484 36 1 8.8287 -2.7959 -0.8001 37 1 11.4027 -4.9577 0.7031 38 1 6.7946 -2.8410 -1.4442 39 1 4.0450 -1.5338 -1.6641 40 1 4.5461 -3.0386 -2.4715 41 1 4.4343 -2.9758 -0.6959 42 1 7.5201 -0.7771 -2.6803 43 1 6.4518 -1.8246 -3.6445 44 1 5.8067 -0.3450 -2.8944 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413012866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:56 Heat of formation + Delta-G solvation = -69.297889 kcal Electronic energy + Delta-G solvation = -25131.058054 eV Core-core repulsion = 21560.285598 eV Total energy + Delta-G solvation = -3570.772456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.02847 -40.53984 -38.26542 -36.97127 -35.86423 -35.27441 -31.29987 -30.91302 -30.65212 -29.11382 -28.14395 -27.95250 -25.31099 -24.17018 -23.22786 -22.21537 -20.94065 -19.49514 -18.76101 -18.29711 -18.07665 -17.22942 -17.09115 -16.65124 -16.50687 -16.34602 -15.80454 -15.47585 -15.19769 -15.15480 -14.78373 -14.55833 -14.33837 -14.20250 -14.04195 -13.74609 -13.57862 -13.11855 -13.05701 -12.74168 -12.61365 -12.56648 -12.32761 -12.23309 -12.15228 -12.03509 -11.99766 -11.74633 -11.64013 -11.52755 -10.74439 -10.69858 -10.56051 -9.58488 -8.78771 -8.43779 -8.32470 -6.45229 0.21509 0.41923 0.70092 1.39947 1.42745 1.49279 1.51983 1.91220 2.00241 2.32131 2.37257 2.83073 3.01840 3.45413 3.59694 3.80898 3.90393 4.01687 4.08358 4.27414 4.31034 4.41286 4.45639 4.48931 4.53017 4.56186 4.70096 4.78782 4.81662 4.89814 4.92177 4.94239 4.98532 5.08703 5.12385 5.27035 5.30866 5.40700 5.46058 5.57440 5.60771 5.83787 5.90178 6.27891 6.40469 6.61007 6.97402 7.22218 8.78745 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.002930 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.725924 B = 9552.659147 C =10196.975686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.092 3.908 4 C -0.185 4.185 5 C -0.097 4.097 6 C -0.141 4.141 7 C -0.129 4.129 8 C 0.100 3.900 9 N -0.647 5.647 10 C 0.546 3.454 11 O -0.527 6.527 12 C -0.079 4.079 13 H 0.112 0.888 14 S -0.256 6.256 15 C 0.091 3.909 16 C -0.538 4.538 17 H 0.058 0.942 18 C 0.020 3.980 19 N -0.921 5.921 20 Si 0.972 3.028 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.269 1.269 24 C -0.083 4.083 25 C -0.146 4.146 26 C -0.144 4.144 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.423 0.577 35 H 0.016 0.984 36 H 0.022 0.978 37 H 0.271 0.729 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.373 8.378 -1.548 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.044 3.956 4 C -0.204 4.204 5 C -0.116 4.116 6 C -0.160 4.160 7 C -0.149 4.149 8 C 0.005 3.995 9 N -0.293 5.293 10 C 0.333 3.667 11 O -0.403 6.403 12 C -0.211 4.211 13 H 0.130 0.870 14 S -0.027 6.027 15 C -0.057 4.057 16 C -0.577 4.577 17 H 0.076 0.924 18 C -0.182 4.182 19 N -0.560 5.560 20 Si 0.795 3.205 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.193 1.193 24 C -0.104 4.104 25 C -0.205 4.205 26 C -0.202 4.202 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.262 0.738 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -24.424 9.698 -1.882 26.346 hybrid contribution 0.400 -1.671 0.467 1.780 sum -24.024 8.027 -1.415 25.369 Atomic orbital electron populations 1.23352 0.75982 1.05615 1.02429 1.85985 1.23769 1.25964 1.89110 1.18713 0.89540 0.86288 1.01026 1.21406 1.01229 0.91053 1.06742 1.21311 0.94083 0.98274 0.97929 1.21255 0.94599 0.98030 1.02115 1.21557 1.01878 0.91055 1.00442 1.17409 0.87911 0.86955 1.07203 1.43286 1.10446 1.11081 1.64439 1.19821 0.81793 0.88746 0.76336 1.90615 1.73159 1.32744 1.43822 1.23447 0.95546 0.97941 1.04157 0.86968 1.86983 1.00776 1.19603 1.95345 1.20799 0.97059 0.89715 0.98077 1.20920 0.92231 0.93650 1.50911 0.92386 1.25822 1.03895 0.94353 0.94106 1.70035 1.37625 0.99132 1.49177 0.85399 0.78077 0.77844 0.79168 1.19254 1.19876 1.19346 1.21261 0.99705 0.97061 0.92336 1.21991 0.92710 1.01863 1.03886 1.21870 1.02071 0.99524 0.96737 0.91361 0.91593 0.86460 0.82072 0.82544 0.84236 0.84845 0.73805 0.96557 0.95961 0.92034 0.90805 0.92249 0.90339 0.90700 0.92834 0.90987 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.01 9.86 -93.25 -0.92 -6.93 16 3 C 0.09 1.95 6.70 22.60 0.15 2.10 16 4 C -0.19 -3.01 9.04 22.35 0.20 -2.81 16 5 C -0.10 -1.60 10.04 22.28 0.22 -1.37 16 6 C -0.14 -3.07 10.04 22.27 0.22 -2.85 16 7 C -0.13 -3.70 8.79 22.38 0.20 -3.50 16 8 C 0.10 2.70 6.52 38.19 0.25 2.95 16 9 N -0.65 -17.68 4.30 -303.14 -1.30 -18.98 16 10 C 0.55 18.48 5.11 87.66 0.45 18.92 16 11 O -0.53 -21.08 12.54 -3.06 -0.04 -21.12 16 12 C -0.08 -2.78 2.45 29.85 0.07 -2.71 16 13 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 14 S -0.26 -11.85 18.92 -56.49 -1.07 -12.92 16 15 C 0.09 4.85 5.26 71.24 0.37 5.22 16 16 C -0.54 -31.21 9.13 25.60 0.23 -30.98 16 17 H 0.06 3.39 7.71 -2.91 -0.02 3.37 16 18 C 0.02 1.10 5.46 84.65 0.46 1.56 16 19 N -0.92 -53.83 13.29 21.45 0.28 -53.55 16 20 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 C -0.08 -2.61 2.64 -10.80 -0.03 -2.64 16 25 C -0.15 -3.32 8.40 71.98 0.60 -2.72 16 26 C -0.14 -4.77 8.59 71.98 0.62 -4.15 16 27 H 0.07 0.44 7.65 -2.39 -0.02 0.42 16 28 H 0.07 0.45 7.67 -2.39 -0.02 0.44 16 29 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.16 1.50 6.30 -2.91 -0.02 1.49 16 31 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.13 4.61 5.42 -2.91 -0.02 4.59 16 34 H 0.42 9.56 7.32 -92.71 -0.68 8.89 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.02 1.23 7.31 -2.39 -0.02 1.21 16 37 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.07 2.59 6.94 -2.38 -0.02 2.58 16 39 H 0.06 1.34 6.19 -2.39 -0.01 1.33 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 2.09 6.81 -2.39 -0.02 2.07 16 43 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.05 1.56 7.10 -2.39 -0.02 1.54 16 Total: -1.00 -70.96 367.43 4.46 -66.50 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.33 Total: 22.45 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 5.14 Total: -21.67 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.02 Total: -72.53 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.96 Total: -28.05 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -11.85 SS G_CDS: -1.07 Total: -12.92 kcal Total: -70.96 4.46 -66.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.801 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds