Wall clock time and date at job start Tue Mar 31 2020 14:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35967 * 117.00116 * 2 1 4 4 C 1.38729 * 119.98396 * 179.97438 * 3 2 1 5 5 C 1.38081 * 120.01389 * 180.02562 * 4 3 2 6 6 C 1.38846 * 119.98590 * 0.25453 * 5 4 3 7 7 N 1.40112 * 120.01427 * 179.72027 * 6 5 4 8 8 C 1.34778 * 119.99965 * 33.08548 * 7 6 5 9 9 O 1.21284 * 120.00041 * 4.70501 * 8 7 6 10 10 C 1.50703 * 120.00029 * 184.71009 * 8 7 6 11 11 H 1.09007 * 109.46829 * 325.00150 * 10 8 7 12 12 S 1.81398 * 109.47091 * 205.00108 * 10 8 7 13 13 C 1.81391 * 103.00107 * 66.46709 * 12 10 8 14 14 C 1.50703 * 109.47308 * 184.73804 * 13 12 10 15 15 H 1.08003 * 119.99637 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99966 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00222 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99458 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47764 * 60.00046 * 18 16 14 20 20 H 1.48501 * 109.46672 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47311 * 299.99459 * 18 16 14 22 22 C 1.52999 * 109.47198 * 84.99530 * 10 8 7 23 23 C 1.52997 * 109.47182 * 179.67463 * 22 10 8 24 24 C 1.52992 * 109.47496 * 299.67862 * 22 10 8 25 25 C 1.38847 * 119.97159 * 359.44833 * 6 5 4 26 26 C 1.38086 * 119.97968 * 0.57390 * 25 6 5 27 27 H 1.08996 * 109.47649 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47000 * 300.00382 * 1 2 3 29 29 H 1.09002 * 109.46800 * 59.99404 * 1 2 3 30 30 H 1.08003 * 119.98863 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.00771 * 179.97438 * 5 4 3 32 32 H 0.97004 * 120.00193 * 213.08687 * 7 6 5 33 33 H 1.09003 * 109.46964 * 304.73556 * 13 12 10 34 34 H 1.09001 * 109.47657 * 64.73370 * 13 12 10 35 35 H 0.96997 * 120.00190 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.46757 * 59.67745 * 22 10 8 37 37 H 1.09003 * 109.47123 * 62.94474 * 23 22 10 38 38 H 1.09002 * 109.47445 * 182.94270 * 23 22 10 39 39 H 1.09003 * 109.47645 * 302.94406 * 23 22 10 40 40 H 1.09004 * 109.47376 * 60.00085 * 24 22 10 41 41 H 1.09007 * 109.47248 * 179.97438 * 24 22 10 42 42 H 1.08997 * 109.47719 * 299.99696 * 24 22 10 43 43 H 1.07994 * 120.01208 * 180.27764 * 25 6 5 44 44 H 1.07997 * 119.99162 * 179.67829 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4317 1.2837 0.0005 5 6 4.0593 2.5136 0.0011 6 6 3.3034 3.6783 0.0064 7 7 3.9396 4.9267 0.0129 8 6 5.1172 5.0862 -0.6229 9 8 5.5845 4.1742 -1.2718 10 6 5.8535 6.3976 -0.5275 11 1 5.1345 7.2163 -0.4933 12 16 6.9266 6.5954 -1.9765 13 6 5.7433 6.7509 -3.3425 14 6 6.4902 6.8079 -4.6502 15 1 7.5690 6.7563 -4.6585 16 6 5.7964 6.9260 -5.8358 17 7 4.4828 6.9884 -5.8256 18 14 6.7224 6.9974 -7.4566 19 1 7.5168 5.7546 -7.6281 20 1 5.7536 7.1246 -8.5749 21 1 7.6328 8.1707 -7.4553 22 6 6.7048 6.4133 0.7437 23 6 7.4585 7.7415 0.8364 24 6 5.7988 6.2546 1.9663 25 6 1.9169 3.6054 -0.0004 26 6 1.2906 2.3747 -0.0004 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0195 0.3776 0.0005 31 1 5.1378 2.5697 0.0019 32 1 3.5325 5.6761 0.4750 33 1 5.0744 5.8902 -3.3434 34 1 5.1608 7.6635 -3.2167 35 1 3.9947 7.0719 -6.6597 36 1 7.4198 5.5912 0.7122 37 1 6.7435 8.5599 0.9205 38 1 8.1048 7.7321 1.7141 39 1 8.0643 7.8789 -0.0593 40 1 5.2619 5.3083 1.9003 41 1 6.4054 6.2653 2.8719 42 1 5.0837 7.0766 1.9979 43 1 1.3284 4.5109 -0.0007 44 1 0.2121 2.3178 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:02 Heat of formation + Delta-G solvation = -56.077371 kcal Electronic energy + Delta-G solvation = -24884.463696 eV Core-core repulsion = 21314.264525 eV Total energy + Delta-G solvation = -3570.199171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.62998 -39.58602 -37.37567 -35.80484 -34.19166 -33.09661 -31.13760 -29.61409 -28.52471 -27.96345 -27.24577 -26.83343 -23.06339 -22.91726 -22.47695 -20.67780 -19.98606 -18.28221 -17.60125 -17.16660 -16.47061 -16.07556 -15.82249 -15.51932 -15.13105 -14.68173 -14.60261 -14.35359 -13.86295 -13.71322 -13.38210 -13.10916 -12.95448 -12.83941 -12.73658 -12.38116 -12.23078 -12.11967 -12.06930 -11.94829 -11.53436 -11.23446 -11.10364 -10.93365 -10.82400 -10.76278 -10.61900 -9.91091 -9.85799 -9.52558 -9.50459 -8.98998 -8.85745 -8.56165 -7.68190 -6.61819 -6.14653 -4.18507 1.31193 1.34592 2.33889 2.86673 3.11984 3.25451 3.31645 3.34239 3.39190 3.79623 3.89261 4.39512 4.66008 4.73559 4.79773 4.82468 4.93505 4.96798 5.01490 5.22479 5.22875 5.24603 5.28818 5.40766 5.41836 5.57674 5.59052 5.71540 5.82928 5.90107 5.92917 5.97169 6.07277 6.25119 6.29494 6.35083 6.48787 6.50050 6.88160 7.10562 7.18377 7.32760 7.47182 7.78712 8.05461 8.34839 8.82185 9.43917 10.96774 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.003832 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.457292 B = 7304.974883 C = 9489.282424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.104 3.896 4 C -0.130 4.130 5 C -0.081 4.081 6 C 0.122 3.878 7 N -0.675 5.675 8 C 0.515 3.485 9 O -0.485 6.485 10 C -0.085 4.085 11 H 0.097 0.903 12 S -0.236 6.236 13 C 0.083 3.917 14 C -0.510 4.510 15 H 0.066 0.934 16 C 0.066 3.934 17 N -0.893 5.893 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.066 4.066 23 C -0.147 4.147 24 C -0.155 4.155 25 C -0.109 4.109 26 C -0.188 4.188 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.407 0.593 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.128 0.872 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.262 -5.978 18.316 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.059 3.941 4 C -0.149 4.149 5 C -0.101 4.101 6 C 0.028 3.972 7 N -0.322 5.322 8 C 0.299 3.701 9 O -0.356 6.356 10 C -0.217 4.217 11 H 0.115 0.885 12 S -0.006 6.006 13 C -0.064 4.064 14 C -0.549 4.549 15 H 0.085 0.915 16 C -0.138 4.138 17 N -0.531 5.531 18 Si 0.733 3.267 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.085 4.085 23 C -0.204 4.204 24 C -0.214 4.214 25 C -0.130 4.130 26 C -0.207 4.207 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.161 0.839 32 H 0.243 0.757 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.145 0.855 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.796 -6.726 17.650 19.758 hybrid contribution -1.700 0.598 -0.787 1.966 sum -7.496 -6.128 16.864 19.446 Atomic orbital electron populations 1.23019 0.78738 1.03692 1.01273 1.86070 1.21091 1.27003 1.89161 1.18976 0.92310 0.84059 0.98756 1.20310 0.91186 0.98331 1.05075 1.21014 1.01020 0.90000 0.98110 1.17689 0.91219 0.85582 1.02718 1.43701 1.22788 1.10918 1.54775 1.20922 0.80511 0.90760 0.77910 1.90772 1.65632 1.42062 1.37166 1.23501 1.00740 0.96623 1.00865 0.88526 1.86552 1.18398 1.94888 1.00751 1.21120 0.94016 0.99666 0.91564 1.20591 0.93511 1.51779 0.89032 0.91547 1.24949 0.94946 0.94678 0.99216 1.69944 1.06110 1.49380 1.27701 0.86419 0.79382 0.78961 0.81940 1.19846 1.21081 1.19907 1.20803 0.96667 1.00395 0.90661 1.21900 1.00360 0.95478 1.02694 1.22054 0.99858 1.01980 0.97474 1.20676 0.92559 0.97827 1.01891 1.20960 0.99792 0.91708 1.08261 0.88461 0.92835 0.92671 0.84948 0.83949 0.75702 0.94552 0.94905 0.92537 0.89991 0.92581 0.92693 0.90442 0.92272 0.91913 0.92343 0.85456 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.82 10.50 -19.64 -0.21 -4.02 16 3 C 0.10 1.36 6.69 -39.22 -0.26 1.10 16 4 C -0.13 -1.80 9.98 -39.46 -0.39 -2.19 16 5 C -0.08 -1.23 8.66 -39.41 -0.34 -1.57 16 6 C 0.12 1.76 6.29 -83.62 -0.53 1.23 16 7 N -0.67 -9.36 4.02 -9.83 -0.04 -9.40 16 8 C 0.52 9.04 5.64 -10.98 -0.06 8.98 16 9 O -0.49 -10.57 13.78 5.55 0.08 -10.50 16 10 C -0.09 -1.40 2.21 -27.88 -0.06 -1.46 16 11 H 0.10 1.46 8.14 -51.92 -0.42 1.03 16 12 S -0.24 -5.17 18.83 -107.50 -2.02 -7.19 16 13 C 0.08 2.24 5.54 36.01 0.20 2.44 16 14 C -0.51 -14.86 9.13 -34.44 -0.31 -15.18 16 15 H 0.07 1.93 7.71 -52.48 -0.40 1.52 16 16 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 17 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 18 Si 0.91 22.02 29.54 -169.99 -5.02 16.99 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.07 -0.86 2.50 -90.63 -0.23 -1.08 16 23 C -0.15 -1.78 9.01 37.16 0.33 -1.44 16 24 C -0.15 -1.53 8.52 37.15 0.32 -1.22 16 25 C -0.11 -1.35 9.96 -39.41 -0.39 -1.74 16 26 C -0.19 -2.21 9.03 -39.46 -0.36 -2.57 16 27 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.14 2.31 6.38 -52.49 -0.33 1.97 16 32 H 0.41 4.27 8.43 -40.82 -0.34 3.93 16 33 H 0.04 1.07 7.92 -51.92 -0.41 0.66 16 34 H 0.03 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.10 6.79 -51.93 -0.35 0.75 16 40 H 0.06 0.61 6.30 -51.93 -0.33 0.28 16 41 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.13 1.17 6.29 -52.49 -0.33 0.84 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -34.10 374.39 -8.69 -42.79 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.66 Total: 3.37 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.19 Total: -11.69 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.70 Total: -35.40 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.13 Total: -14.52 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -2.02 Total: -7.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.10 -8.69 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.284 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds