Wall clock time and date at job start Tue Mar 31 2020 14:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35967 * 117.00116 * 2 1 4 4 C 1.38729 * 119.98396 * 179.97438 * 3 2 1 5 5 C 1.38081 * 120.01389 * 180.02562 * 4 3 2 6 6 C 1.38846 * 119.98590 * 0.25453 * 5 4 3 7 7 N 1.40112 * 120.01427 * 179.72027 * 6 5 4 8 8 C 1.34778 * 119.99965 * 33.08548 * 7 6 5 9 9 O 1.21284 * 120.00041 * 4.70501 * 8 7 6 10 10 C 1.50703 * 120.00029 * 184.71009 * 8 7 6 11 11 H 1.09007 * 109.46829 * 325.00150 * 10 8 7 12 12 S 1.81398 * 109.47091 * 205.00108 * 10 8 7 13 13 C 1.81391 * 103.00107 * 66.46709 * 12 10 8 14 14 C 1.50703 * 109.47308 * 184.73804 * 13 12 10 15 15 H 1.08003 * 119.99637 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99966 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00222 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99458 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47764 * 60.00046 * 18 16 14 20 20 H 1.48501 * 109.46672 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47311 * 299.99459 * 18 16 14 22 22 C 1.52999 * 109.47198 * 84.99530 * 10 8 7 23 23 C 1.52997 * 109.47182 * 179.67463 * 22 10 8 24 24 C 1.52992 * 109.47496 * 299.67862 * 22 10 8 25 25 C 1.38847 * 119.97159 * 359.44833 * 6 5 4 26 26 C 1.38086 * 119.97968 * 0.57390 * 25 6 5 27 27 H 1.08996 * 109.47649 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47000 * 300.00382 * 1 2 3 29 29 H 1.09002 * 109.46800 * 59.99404 * 1 2 3 30 30 H 1.08003 * 119.98863 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.00771 * 179.97438 * 5 4 3 32 32 H 0.97004 * 120.00193 * 213.08687 * 7 6 5 33 33 H 1.09003 * 109.46964 * 304.73556 * 13 12 10 34 34 H 1.09001 * 109.47657 * 64.73370 * 13 12 10 35 35 H 0.96997 * 120.00190 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.46757 * 59.67745 * 22 10 8 37 37 H 1.09003 * 109.47123 * 62.94474 * 23 22 10 38 38 H 1.09002 * 109.47445 * 182.94270 * 23 22 10 39 39 H 1.09003 * 109.47645 * 302.94406 * 23 22 10 40 40 H 1.09004 * 109.47376 * 60.00085 * 24 22 10 41 41 H 1.09007 * 109.47248 * 179.97438 * 24 22 10 42 42 H 1.08997 * 109.47719 * 299.99696 * 24 22 10 43 43 H 1.07994 * 120.01208 * 180.27764 * 25 6 5 44 44 H 1.07997 * 119.99162 * 179.67829 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4317 1.2837 0.0005 5 6 4.0593 2.5136 0.0011 6 6 3.3034 3.6783 0.0064 7 7 3.9396 4.9267 0.0129 8 6 5.1172 5.0862 -0.6229 9 8 5.5845 4.1742 -1.2718 10 6 5.8535 6.3976 -0.5275 11 1 5.1345 7.2163 -0.4933 12 16 6.9266 6.5954 -1.9765 13 6 5.7433 6.7509 -3.3425 14 6 6.4902 6.8079 -4.6502 15 1 7.5690 6.7563 -4.6585 16 6 5.7964 6.9260 -5.8358 17 7 4.4828 6.9884 -5.8256 18 14 6.7224 6.9974 -7.4566 19 1 7.5168 5.7546 -7.6281 20 1 5.7536 7.1246 -8.5749 21 1 7.6328 8.1707 -7.4553 22 6 6.7048 6.4133 0.7437 23 6 7.4585 7.7415 0.8364 24 6 5.7988 6.2546 1.9663 25 6 1.9169 3.6054 -0.0004 26 6 1.2906 2.3747 -0.0004 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0195 0.3776 0.0005 31 1 5.1378 2.5697 0.0019 32 1 3.5325 5.6761 0.4750 33 1 5.0744 5.8902 -3.3434 34 1 5.1608 7.6635 -3.2167 35 1 3.9947 7.0719 -6.6597 36 1 7.4198 5.5912 0.7122 37 1 6.7435 8.5599 0.9205 38 1 8.1048 7.7321 1.7141 39 1 8.0643 7.8789 -0.0593 40 1 5.2619 5.3083 1.9003 41 1 6.4054 6.2653 2.8719 42 1 5.0837 7.0766 1.9979 43 1 1.3284 4.5109 -0.0007 44 1 0.2121 2.3178 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:01 Heat of formation + Delta-G solvation = -76.994081 kcal Electronic energy + Delta-G solvation = -24885.370712 eV Core-core repulsion = 21314.264525 eV Total energy + Delta-G solvation = -3571.106188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80436 -40.65525 -38.41686 -36.98301 -35.38404 -35.30972 -32.14472 -30.90313 -30.49599 -29.04706 -28.10232 -27.73143 -25.23299 -23.97475 -23.55292 -21.79983 -21.19769 -19.25853 -18.87087 -18.53814 -18.39049 -17.21099 -17.07449 -16.61803 -16.52420 -16.30363 -15.81230 -15.40746 -15.30513 -14.72513 -14.65811 -14.49449 -14.38573 -14.14285 -13.95521 -13.78719 -13.69241 -13.53323 -12.96988 -12.91665 -12.76809 -12.68068 -12.41599 -12.32679 -12.14806 -11.89119 -11.84443 -11.74255 -11.45082 -11.08453 -10.82240 -10.76609 -10.67145 -10.03896 -8.74898 -8.42894 -8.34728 -6.48942 0.25036 0.29792 0.77739 1.36116 1.40598 1.46942 1.51369 1.80949 2.13717 2.34390 2.39652 2.75496 2.98732 3.49176 3.63605 3.80052 3.88652 3.89851 4.20837 4.23961 4.28845 4.32682 4.42295 4.45107 4.54588 4.62279 4.73106 4.84162 4.86851 4.88548 4.91641 4.95088 4.97824 5.03404 5.18638 5.25708 5.28339 5.35623 5.41196 5.49555 5.53260 5.79731 5.86166 6.32800 6.42912 6.57482 7.07186 7.18665 8.76440 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.003832 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.457292 B = 7304.974883 C = 9489.282424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.103 3.897 4 C -0.147 4.147 5 C -0.098 4.098 6 C 0.097 3.903 7 N -0.654 5.654 8 C 0.513 3.487 9 O -0.538 6.538 10 C -0.073 4.073 11 H 0.117 0.883 12 S -0.247 6.247 13 C 0.090 3.910 14 C -0.538 4.538 15 H 0.061 0.939 16 C 0.014 3.986 17 N -0.925 5.925 18 Si 0.976 3.024 19 H -0.271 1.271 20 H -0.273 1.273 21 H -0.261 1.261 22 C -0.061 4.061 23 C -0.144 4.144 24 C -0.147 4.147 25 C -0.103 4.103 26 C -0.184 4.184 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.121 0.879 32 H 0.425 0.575 33 H -0.002 1.002 34 H 0.017 0.983 35 H 0.270 0.730 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.155 0.845 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 -5.408 19.665 22.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.058 3.942 4 C -0.166 4.166 5 C -0.118 4.118 6 C 0.003 3.997 7 N -0.302 5.302 8 C 0.297 3.703 9 O -0.413 6.413 10 C -0.205 4.205 11 H 0.135 0.865 12 S -0.017 6.017 13 C -0.057 4.057 14 C -0.577 4.577 15 H 0.079 0.921 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.798 3.202 19 H -0.196 1.196 20 H -0.198 1.198 21 H -0.185 1.185 22 C -0.081 4.081 23 C -0.201 4.201 24 C -0.206 4.206 25 C -0.123 4.123 26 C -0.203 4.203 27 H 0.137 0.863 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.139 0.861 32 H 0.264 0.736 33 H 0.016 0.984 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.173 0.827 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.334 -6.140 19.035 21.303 hybrid contribution -1.349 0.311 -1.066 1.747 sum -8.683 -5.828 17.970 20.791 Atomic orbital electron populations 1.23366 0.76382 1.05622 1.02370 1.86058 1.23545 1.26488 1.88859 1.19098 0.92118 0.85121 0.97910 1.20413 0.92264 0.98080 1.05824 1.20930 1.00247 0.91180 0.99442 1.17885 0.92236 0.85180 1.04383 1.43426 1.21482 1.11627 1.53685 1.21041 0.81325 0.90344 0.77549 1.90756 1.67189 1.43664 1.39724 1.23677 1.00698 0.96845 0.99301 0.86482 1.86341 1.18705 1.94998 1.01629 1.20715 0.94291 0.96995 0.93698 1.20950 0.93520 1.52527 0.90692 0.92100 1.25931 0.95883 0.93722 1.03100 1.70053 1.07649 1.49680 1.28942 0.85344 0.78317 0.79323 0.77176 1.19585 1.19821 1.18513 1.20867 0.96595 1.00522 0.90140 1.21878 1.00620 0.95129 1.02507 1.22015 0.99847 1.02564 0.96175 1.20999 0.91667 0.99324 1.00353 1.21327 1.01380 0.90824 1.06773 0.86347 0.91082 0.92071 0.84581 0.86105 0.73594 0.98380 0.96443 0.92113 0.91749 0.91100 0.90198 0.93116 0.92888 0.89844 0.90081 0.82714 0.82072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.54 10.50 -93.18 -0.98 -8.52 16 3 C 0.10 2.60 6.69 22.50 0.15 2.75 16 4 C -0.15 -4.18 9.98 22.35 0.22 -3.96 16 5 C -0.10 -3.09 8.66 22.38 0.19 -2.90 16 6 C 0.10 2.78 6.29 38.11 0.24 3.02 16 7 N -0.65 -17.94 4.02 -303.39 -1.22 -19.16 16 8 C 0.51 18.48 5.64 87.66 0.49 18.98 16 9 O -0.54 -24.86 13.78 -3.04 -0.04 -24.91 16 10 C -0.07 -2.41 2.21 29.85 0.07 -2.34 16 11 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 12 S -0.25 -11.23 18.83 -56.49 -1.06 -12.29 16 13 C 0.09 5.11 5.54 71.24 0.39 5.50 16 14 C -0.54 -32.51 9.13 25.60 0.23 -32.27 16 15 H 0.06 3.65 7.71 -2.91 -0.02 3.63 16 16 C 0.01 0.85 5.46 84.66 0.46 1.31 16 17 N -0.92 -56.54 13.29 21.45 0.28 -56.26 16 18 Si 0.98 45.56 29.54 68.60 2.03 47.59 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 C -0.06 -1.54 2.50 -10.80 -0.03 -1.56 16 23 C -0.14 -3.23 9.01 71.98 0.65 -2.58 16 24 C -0.15 -2.52 8.52 71.98 0.61 -1.90 16 25 C -0.10 -2.37 9.96 22.38 0.22 -2.15 16 26 C -0.18 -3.92 9.03 22.35 0.20 -3.72 16 27 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.67 7.66 -2.38 -0.02 0.65 16 29 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 30 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.12 4.28 6.38 -2.91 -0.02 4.26 16 32 H 0.42 8.16 8.43 -92.70 -0.78 7.38 16 33 H 0.00 -0.13 7.92 -2.39 -0.02 -0.15 16 34 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 1.42 6.79 -2.39 -0.02 1.40 16 40 H 0.05 0.99 6.30 -2.39 -0.02 0.98 16 41 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 44 H 0.16 2.32 6.29 -2.91 -0.02 2.30 16 Total: -1.00 -78.56 374.39 4.46 -74.11 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.22 Total: 19.94 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 5.23 Total: -20.50 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -0.94 Total: -75.41 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.02 Total: -33.42 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: -11.23 SS G_CDS: -1.06 Total: -12.29 kcal Total: -78.56 4.46 -74.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.888 kcal (2) G-P(sol) polarization free energy of solvation -78.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds