Wall clock time and date at job start Tue Mar 31 2020 13:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47076 * 2 1 4 4 C 1.38309 * 119.95966 * 270.02068 * 3 2 1 5 5 C 1.38268 * 120.14903 * 180.02562 * 4 3 2 6 6 C 1.38125 * 120.07619 * 359.97438 * 5 4 3 7 7 C 1.38895 * 119.92475 * 359.97123 * 6 5 4 8 8 N 1.39673 * 120.07823 * 180.02562 * 7 6 5 9 9 C 1.46498 * 119.99900 * 154.99855 * 8 7 6 10 10 S 1.65594 * 119.99964 * 335.00887 * 8 7 6 11 11 O 1.42098 * 104.27781 * 206.06631 * 10 8 7 12 12 O 1.42105 * 104.27889 * 333.91966 * 10 8 7 13 13 C 1.81401 * 104.45328 * 89.99234 * 10 8 7 14 14 C 1.53002 * 109.47033 * 173.86693 * 13 10 8 15 15 C 1.50698 * 115.54864 * 65.20065 * 14 13 10 16 16 H 1.08001 * 120.00392 * 264.78023 * 15 14 13 17 17 C 1.37884 * 120.00189 * 84.78398 * 15 14 13 18 18 N 1.31516 * 119.99670 * 352.22302 * 17 15 14 19 19 Si 1.86795 * 120.00016 * 172.22860 * 17 15 14 20 20 H 1.48501 * 109.47409 * 59.99798 * 19 17 15 21 21 H 1.48507 * 109.46946 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47217 * 299.99304 * 19 17 15 23 23 C 1.52997 * 117.50325 * 279.52729 * 14 13 10 24 24 C 1.52996 * 117.49848 * 210.86598 * 14 13 10 25 25 C 1.38082 * 119.96481 * 90.00075 * 3 2 1 26 26 H 1.09005 * 109.47159 * 299.99962 * 1 2 3 27 27 H 1.08999 * 109.47283 * 59.99695 * 1 2 3 28 28 H 1.08999 * 109.47055 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47502 * 240.00022 * 2 1 3 30 30 H 1.09005 * 109.47376 * 119.99862 * 2 1 3 31 31 H 1.07994 * 119.92777 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.96315 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.04009 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.46714 * 90.00568 * 9 8 7 35 35 H 1.09001 * 109.46916 * 210.00532 * 9 8 7 36 36 H 1.09002 * 109.47392 * 330.00441 * 9 8 7 37 37 H 1.08996 * 109.47088 * 293.86780 * 13 10 8 38 38 H 1.09000 * 109.46950 * 53.87376 * 13 10 8 39 39 H 0.97001 * 119.99956 * 185.02654 * 18 17 15 40 40 H 1.08998 * 117.49459 * 0.02562 * 23 14 13 41 41 H 1.08996 * 117.49823 * 145.01743 * 23 14 13 42 42 H 1.09005 * 117.50108 * 214.98156 * 24 14 13 43 43 H 1.09001 * 117.50057 * 359.97438 * 24 14 13 44 44 H 1.07995 * 120.04044 * 359.72478 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0722 -1.1983 5 6 2.7235 3.3756 -1.2029 6 6 2.9560 4.0318 -0.0099 7 6 2.7251 3.3810 1.1953 8 7 2.9586 4.0417 2.4035 9 6 2.2434 3.6296 3.6138 10 16 4.0436 5.2911 2.4679 11 8 4.4872 5.3008 3.8178 12 8 4.9458 5.0269 1.4022 13 6 3.0538 6.7691 2.1124 14 6 3.9192 8.0179 2.2929 15 6 5.0661 8.1593 1.3256 16 1 6.0517 7.8156 1.6027 17 6 4.8571 8.7274 0.0867 18 7 3.6349 9.0056 -0.3114 19 14 6.3099 9.1018 -1.0261 20 1 7.0403 7.8443 -1.3267 21 1 5.8211 9.7046 -2.2922 22 1 7.2232 10.0539 -0.3444 23 6 4.1301 8.5312 3.7186 24 6 3.2225 9.2994 2.7547 25 6 2.2622 2.0711 1.1962 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0808 1.5616 -2.1325 32 1 2.9015 3.8815 -2.1403 33 1 3.3167 5.0497 -0.0141 34 1 2.8187 2.8625 4.1322 35 1 2.1124 4.4906 4.2693 36 1 1.2672 3.2291 3.3405 37 1 2.6900 6.7244 1.0859 38 1 2.2066 6.8122 2.7967 39 1 3.4812 9.3371 -1.2099 40 1 3.6528 7.9790 4.5281 41 1 5.0984 8.9715 3.9569 42 1 3.5940 10.2448 2.3592 43 1 2.1476 9.2529 2.9295 44 1 2.0780 1.5635 2.1316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416527891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:04 Heat of formation + Delta-G solvation = -24.248415 kcal Electronic energy + Delta-G solvation = -26165.328926 eV Core-core repulsion = 22596.509962 eV Total energy + Delta-G solvation = -3568.818964 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.60798 -36.83192 -36.50959 -36.21967 -35.19257 -33.67173 -32.08668 -29.86971 -29.35158 -28.26358 -26.23621 -25.49490 -23.93365 -21.89220 -21.31859 -21.23811 -19.50957 -18.43418 -17.21753 -16.87226 -16.49930 -15.79543 -15.46935 -14.93936 -14.82298 -14.62854 -14.18184 -13.98811 -13.87568 -13.63618 -13.45251 -13.15150 -13.01406 -12.47604 -12.22335 -12.06367 -11.89696 -11.79864 -11.61262 -11.46161 -11.38131 -11.18317 -11.09771 -10.93401 -10.90328 -10.67206 -10.57545 -10.50122 -10.23765 -10.08753 -9.68376 -9.01848 -8.60648 -8.59116 -8.20747 -7.79686 -6.17772 -4.29153 0.82227 1.55744 1.60304 3.09651 3.30693 3.32821 3.39587 3.91902 4.34401 4.48502 4.65274 4.70143 4.81480 4.89939 5.08438 5.13461 5.15638 5.25513 5.33255 5.39263 5.45482 5.52559 5.54578 5.59232 5.68637 5.71557 5.75697 5.84540 5.96699 6.03502 6.05807 6.18045 6.26880 6.33295 6.50429 6.54070 6.66542 6.71149 6.77946 6.84715 6.94104 7.17624 7.28095 7.34033 7.76521 8.14891 8.76479 9.42506 10.89673 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.004657 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.417215 B = 6010.658247 C = 7098.549015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.064 4.064 4 C -0.149 4.149 5 C -0.079 4.079 6 C -0.154 4.154 7 C 0.182 3.818 8 N -0.954 5.954 9 C 0.086 3.914 10 S 2.592 3.408 11 O -0.962 6.962 12 O -0.932 6.932 13 C -0.550 4.550 14 C 0.042 3.958 15 C -0.519 4.519 16 H 0.068 0.932 17 C 0.084 3.916 18 N -0.873 5.873 19 Si 0.890 3.110 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.208 4.208 24 C -0.139 4.139 25 C -0.154 4.154 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.265 0.735 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 -13.618 1.679 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.064 4.064 4 C -0.168 4.168 5 C -0.098 4.098 6 C -0.175 4.175 7 C 0.086 3.914 8 N -0.777 5.777 9 C -0.059 4.059 10 S 2.692 3.308 11 O -0.952 6.952 12 O -0.922 6.922 13 C -0.683 4.683 14 C 0.040 3.960 15 C -0.556 4.556 16 H 0.086 0.914 17 C -0.121 4.121 18 N -0.508 5.508 19 Si 0.716 3.284 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.246 4.246 24 C -0.178 4.178 25 C -0.176 4.176 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.156 0.844 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.155 0.845 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.498 -13.588 1.851 15.630 hybrid contribution 0.010 0.590 -0.760 0.962 sum -7.488 -12.998 1.091 15.041 Atomic orbital electron populations 1.21742 0.94849 1.01389 1.02326 1.20514 0.96040 0.92751 1.02675 1.19626 0.98369 0.95757 0.92689 1.20901 1.03326 0.95329 0.97227 1.20922 0.96919 0.94371 0.97568 1.21306 1.03159 1.01765 0.91251 1.17505 0.97463 0.91881 0.84571 1.56085 1.59132 1.49626 1.12838 1.21587 0.97094 1.01831 0.85349 1.05933 0.75073 0.75331 0.74492 1.93506 1.78818 1.86571 1.36317 1.93586 1.59594 1.82904 1.56121 1.30046 1.11294 1.15928 1.11069 1.18285 0.96157 0.89196 0.92379 1.20481 0.93631 1.42173 0.99335 0.91358 1.24943 0.95875 0.93719 0.97602 1.69965 1.19704 1.42967 1.18194 0.86665 0.82857 0.79251 0.79602 1.19379 1.21041 1.19842 1.23211 1.01446 1.06469 0.93448 1.22562 0.95389 0.97491 1.02352 1.20641 1.05948 0.92893 0.98084 0.92582 0.92472 0.92653 0.91057 0.91221 0.86316 0.85444 0.84398 0.91891 0.90315 0.90608 0.84487 0.88190 0.92567 0.90701 0.89396 0.89437 0.91453 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.77 6.06 -27.88 -0.17 -0.93 16 3 C -0.06 -0.80 5.13 -104.65 -0.54 -1.34 16 4 C -0.15 -1.93 9.70 -39.54 -0.38 -2.32 16 5 C -0.08 -1.21 10.04 -39.61 -0.40 -1.60 16 6 C -0.15 -2.76 8.42 -39.38 -0.33 -3.09 16 7 C 0.18 3.05 6.04 -83.78 -0.51 2.55 16 8 N -0.95 -16.05 3.32 -65.39 -0.22 -16.27 16 9 C 0.09 1.09 9.20 59.85 0.55 1.64 16 10 S 2.59 54.18 4.47 -107.50 -0.48 53.70 16 11 O -0.96 -21.27 17.09 -57.54 -0.98 -22.25 16 12 O -0.93 -22.51 14.83 -57.54 -0.85 -23.36 16 13 C -0.55 -11.58 5.92 37.16 0.22 -11.36 16 14 C 0.04 1.02 1.32 -155.66 -0.21 0.81 16 15 C -0.52 -14.02 8.18 -34.44 -0.28 -14.30 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C 0.08 2.25 5.38 -17.82 -0.10 2.16 16 18 N -0.87 -23.56 12.98 55.43 0.72 -22.84 16 19 Si 0.89 21.10 29.55 -169.99 -5.02 16.08 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.21 -4.52 9.96 -26.70 -0.27 -4.78 16 24 C -0.14 -3.11 9.49 -26.70 -0.25 -3.36 16 25 C -0.15 -2.14 8.79 -39.38 -0.35 -2.49 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.14 2.78 5.11 -52.49 -0.27 2.51 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.93 7.79 -51.93 -0.40 0.52 16 36 H 0.08 0.76 7.47 -51.93 -0.39 0.37 16 37 H 0.14 3.00 7.14 -51.93 -0.37 2.63 16 38 H 0.10 1.77 8.09 -51.92 -0.42 1.35 16 39 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 40 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 42 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.12 1.43 7.13 -52.49 -0.37 1.05 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -31.76 373.37 -10.68 -42.45 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.84 Total: 6.10 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: -2.63 Total: -39.23 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.50 Total: -39.11 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.84 Total: -45.61 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 54.18 SS G_CDS: -0.48 Total: 53.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.76 -10.68 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416527891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.198 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds