Wall clock time and date at job start Tue Mar 31 2020 13:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47076 * 2 1 4 4 C 1.38309 * 119.95966 * 270.02068 * 3 2 1 5 5 C 1.38268 * 120.14903 * 180.02562 * 4 3 2 6 6 C 1.38125 * 120.07619 * 359.97438 * 5 4 3 7 7 C 1.38895 * 119.92475 * 359.97123 * 6 5 4 8 8 N 1.39673 * 120.07823 * 180.02562 * 7 6 5 9 9 C 1.46498 * 119.99900 * 154.99855 * 8 7 6 10 10 S 1.65594 * 119.99964 * 335.00887 * 8 7 6 11 11 O 1.42098 * 104.27781 * 206.06631 * 10 8 7 12 12 O 1.42105 * 104.27889 * 333.91966 * 10 8 7 13 13 C 1.81401 * 104.45328 * 89.99234 * 10 8 7 14 14 C 1.53002 * 109.47033 * 173.86693 * 13 10 8 15 15 C 1.50698 * 115.54864 * 65.20065 * 14 13 10 16 16 H 1.08001 * 120.00392 * 264.78023 * 15 14 13 17 17 C 1.37884 * 120.00189 * 84.78398 * 15 14 13 18 18 N 1.31516 * 119.99670 * 352.22302 * 17 15 14 19 19 Si 1.86795 * 120.00016 * 172.22860 * 17 15 14 20 20 H 1.48501 * 109.47409 * 59.99798 * 19 17 15 21 21 H 1.48507 * 109.46946 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47217 * 299.99304 * 19 17 15 23 23 C 1.52997 * 117.50325 * 279.52729 * 14 13 10 24 24 C 1.52996 * 117.49848 * 210.86598 * 14 13 10 25 25 C 1.38082 * 119.96481 * 90.00075 * 3 2 1 26 26 H 1.09005 * 109.47159 * 299.99962 * 1 2 3 27 27 H 1.08999 * 109.47283 * 59.99695 * 1 2 3 28 28 H 1.08999 * 109.47055 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47502 * 240.00022 * 2 1 3 30 30 H 1.09005 * 109.47376 * 119.99862 * 2 1 3 31 31 H 1.07994 * 119.92777 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.96315 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.04009 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.46714 * 90.00568 * 9 8 7 35 35 H 1.09001 * 109.46916 * 210.00532 * 9 8 7 36 36 H 1.09002 * 109.47392 * 330.00441 * 9 8 7 37 37 H 1.08996 * 109.47088 * 293.86780 * 13 10 8 38 38 H 1.09000 * 109.46950 * 53.87376 * 13 10 8 39 39 H 0.97001 * 119.99956 * 185.02654 * 18 17 15 40 40 H 1.08998 * 117.49459 * 0.02562 * 23 14 13 41 41 H 1.08996 * 117.49823 * 145.01743 * 23 14 13 42 42 H 1.09005 * 117.50108 * 214.98156 * 24 14 13 43 43 H 1.09001 * 117.50057 * 359.97438 * 24 14 13 44 44 H 1.07995 * 120.04044 * 359.72478 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0722 -1.1983 5 6 2.7235 3.3756 -1.2029 6 6 2.9560 4.0318 -0.0099 7 6 2.7251 3.3810 1.1953 8 7 2.9586 4.0417 2.4035 9 6 2.2434 3.6296 3.6138 10 16 4.0436 5.2911 2.4679 11 8 4.4872 5.3008 3.8178 12 8 4.9458 5.0269 1.4022 13 6 3.0538 6.7691 2.1124 14 6 3.9192 8.0179 2.2929 15 6 5.0661 8.1593 1.3256 16 1 6.0517 7.8156 1.6027 17 6 4.8571 8.7274 0.0867 18 7 3.6349 9.0056 -0.3114 19 14 6.3099 9.1018 -1.0261 20 1 7.0403 7.8443 -1.3267 21 1 5.8211 9.7046 -2.2922 22 1 7.2232 10.0539 -0.3444 23 6 4.1301 8.5312 3.7186 24 6 3.2225 9.2994 2.7547 25 6 2.2622 2.0711 1.1962 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0808 1.5616 -2.1325 32 1 2.9015 3.8815 -2.1403 33 1 3.3167 5.0497 -0.0141 34 1 2.8187 2.8625 4.1322 35 1 2.1124 4.4906 4.2693 36 1 1.2672 3.2291 3.3405 37 1 2.6900 6.7244 1.0859 38 1 2.2066 6.8122 2.7967 39 1 3.4812 9.3371 -1.2099 40 1 3.6528 7.9790 4.5281 41 1 5.0984 8.9715 3.9569 42 1 3.5940 10.2448 2.3592 43 1 2.1476 9.2529 2.9295 44 1 2.0780 1.5635 2.1316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416527891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:03 Heat of formation + Delta-G solvation = -42.449298 kcal Electronic energy + Delta-G solvation = -26166.118175 eV Core-core repulsion = 22596.509962 eV Total energy + Delta-G solvation = -3569.608213 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73641 -38.63590 -38.20544 -37.37632 -36.88718 -34.60384 -34.12238 -30.96218 -30.38154 -29.90074 -27.58752 -27.25350 -24.82078 -23.10518 -23.00905 -22.34844 -21.31248 -19.90178 -18.68858 -18.37362 -18.08491 -17.08264 -16.92551 -16.74770 -16.30134 -15.94627 -15.64578 -15.35644 -15.09929 -14.84981 -14.61640 -14.32759 -14.06492 -13.79975 -13.71849 -13.62548 -13.28663 -13.24114 -13.06657 -12.98823 -12.88210 -12.72466 -12.48348 -12.45779 -12.34860 -12.28016 -11.98437 -11.71889 -11.66599 -11.60703 -11.20756 -10.91780 -10.58415 -10.00265 -9.69721 -9.00263 -8.22479 -6.37774 -0.77606 0.42013 0.46980 1.36756 1.38692 1.45786 1.66240 2.37058 2.71255 2.92863 3.02679 3.17929 3.33837 3.51290 3.82834 3.93449 4.00776 4.11532 4.21373 4.36842 4.41157 4.43104 4.49011 4.54188 4.58236 4.62064 4.68004 4.75151 4.77188 4.80424 4.87422 4.93655 5.13251 5.16654 5.17398 5.20572 5.38210 5.40327 5.48201 5.55003 5.56333 5.67332 5.68270 5.74786 6.15345 6.17713 6.67914 7.34850 8.84328 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.004657 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.417215 B = 6010.658247 C = 7098.549015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.058 4.058 4 C -0.143 4.143 5 C -0.093 4.093 6 C -0.191 4.191 7 C 0.161 3.839 8 N -0.950 5.950 9 C 0.070 3.930 10 S 2.608 3.392 11 O -0.978 6.978 12 O -0.976 6.976 13 C -0.546 4.546 14 C 0.009 3.991 15 C -0.538 4.538 16 H 0.048 0.952 17 C 0.046 3.954 18 N -0.890 5.890 19 Si 0.933 3.067 20 H -0.278 1.278 21 H -0.272 1.272 22 H -0.267 1.267 23 C -0.195 4.195 24 C -0.135 4.135 25 C -0.151 4.151 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.266 0.734 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.056 -15.970 2.146 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.059 4.059 4 C -0.162 4.162 5 C -0.111 4.111 6 C -0.212 4.212 7 C 0.066 3.934 8 N -0.775 5.775 9 C -0.073 4.073 10 S 2.708 3.292 11 O -0.969 6.969 12 O -0.966 6.966 13 C -0.679 4.679 14 C 0.007 3.993 15 C -0.575 4.575 16 H 0.066 0.934 17 C -0.157 4.157 18 N -0.525 5.525 19 Si 0.758 3.242 20 H -0.204 1.204 21 H -0.197 1.197 22 H -0.191 1.191 23 C -0.233 4.233 24 C -0.174 4.174 25 C -0.173 4.173 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.167 0.833 32 H 0.151 0.849 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.227 -15.923 2.329 18.551 hybrid contribution 0.502 1.215 -0.909 1.598 sum -8.726 -14.709 1.419 17.161 Atomic orbital electron populations 1.21733 0.93810 1.02544 1.02041 1.20602 0.96757 0.90317 1.04066 1.20106 0.96552 0.97310 0.91896 1.21254 1.01772 0.94223 0.98983 1.21118 0.97381 0.95652 0.96974 1.21253 1.05724 1.00987 0.93286 1.17700 0.98824 0.93096 0.83815 1.55647 1.59046 1.48505 1.14327 1.22015 0.98464 1.02818 0.84002 1.05132 0.75118 0.75664 0.73308 1.93468 1.79633 1.87076 1.36712 1.93524 1.61963 1.83667 1.57450 1.29904 1.11891 1.15083 1.11060 1.18396 0.96527 0.91049 0.93360 1.20647 0.93965 1.42327 1.00560 0.93410 1.25491 0.97806 0.93790 0.98623 1.70012 1.20576 1.43471 1.18479 0.86001 0.80710 0.78705 0.78827 1.20387 1.19662 1.19147 1.23269 1.01382 1.05592 0.93022 1.22525 0.96623 0.96030 1.02251 1.20961 1.04871 0.91575 0.99906 0.92866 0.92836 0.90816 0.89624 0.89991 0.83299 0.84905 0.87881 0.90598 0.89466 0.87470 0.86019 0.84836 0.92434 0.88142 0.89733 0.91302 0.89264 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 71.98 0.71 -1.08 16 2 C -0.08 -1.16 6.06 29.85 0.18 -0.98 16 3 C -0.06 -1.29 5.13 -19.88 -0.10 -1.39 16 4 C -0.14 -3.45 9.70 22.29 0.22 -3.24 16 5 C -0.09 -2.86 10.04 22.25 0.22 -2.63 16 6 C -0.19 -7.14 8.42 22.40 0.19 -6.95 16 7 C 0.16 5.36 6.04 38.22 0.23 5.59 16 8 N -0.95 -31.40 3.32 -360.81 -1.20 -32.60 16 9 C 0.07 1.61 9.20 127.77 1.18 2.79 16 10 S 2.61 111.09 4.47 -56.49 -0.25 110.83 16 11 O -0.98 -43.24 17.09 -127.65 -2.18 -45.42 16 12 O -0.98 -49.59 14.83 -127.65 -1.89 -51.49 16 13 C -0.55 -23.31 5.92 71.98 0.43 -22.89 16 14 C 0.01 0.44 1.32 -52.93 -0.07 0.37 16 15 C -0.54 -30.09 8.18 25.60 0.21 -29.88 16 16 H 0.05 2.78 7.83 -2.91 -0.02 2.76 16 17 C 0.05 2.56 5.38 84.66 0.46 3.01 16 18 N -0.89 -49.18 12.98 21.45 0.28 -48.90 16 19 Si 0.93 44.30 29.55 68.60 2.03 46.33 16 20 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 C -0.20 -8.37 9.96 30.62 0.30 -8.07 16 24 C -0.14 -6.04 9.49 30.62 0.29 -5.75 16 25 C -0.15 -3.86 8.79 22.40 0.20 -3.67 16 26 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.08 1.04 8.08 -2.38 -0.02 1.02 16 31 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 33 H 0.10 4.52 5.11 -2.91 -0.01 4.50 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.85 7.79 -2.39 -0.02 1.83 16 36 H 0.11 1.78 7.47 -2.39 -0.02 1.76 16 37 H 0.12 5.59 7.14 -2.39 -0.02 5.57 16 38 H 0.13 4.59 8.09 -2.39 -0.02 4.57 16 39 H 0.27 14.02 8.32 -92.71 -0.77 13.25 16 40 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 41 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 42 H 0.07 3.30 8.14 -2.38 -0.02 3.28 16 43 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 44 H 0.15 2.92 7.13 -2.91 -0.02 2.90 16 Total: -1.00 -71.15 373.37 2.40 -68.75 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.98 Total: 27.28 kcal Atomic # 6 Polarization: -79.41 SS G_CDS: 4.64 Total: -74.77 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -0.92 Total: -81.51 kcal Atomic # 8 Polarization: -92.84 SS G_CDS: -4.07 Total: -96.91 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 111.09 SS G_CDS: -0.25 Total: 110.83 kcal Total: -71.15 2.40 -68.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416527891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.300 kcal (2) G-P(sol) polarization free energy of solvation -71.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds