Wall clock time and date at job start Tue Mar 31 2020 14:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00467 * 2 1 4 4 C 1.52992 * 109.46930 * 121.50117 * 3 2 1 5 5 H 1.09000 * 109.47543 * 303.51046 * 4 3 2 6 6 C 1.53002 * 109.47007 * 183.50823 * 4 3 2 7 7 C 1.50699 * 109.47274 * 175.00231 * 6 4 3 8 8 C 1.38240 * 120.00227 * 269.72622 * 7 6 4 9 9 C 1.38232 * 119.99970 * 179.76413 * 8 7 6 10 10 C 1.38228 * 120.00295 * 0.50660 * 9 8 7 11 11 C 1.38240 * 119.99919 * 359.74888 * 10 9 8 12 12 C 1.38231 * 120.00049 * 359.97438 * 11 10 9 13 13 N 1.46497 * 109.47230 * 63.50895 * 4 3 2 14 14 S 1.65603 * 120.00073 * 235.73137 * 13 4 3 15 15 O 1.42102 * 104.27644 * 181.56178 * 14 13 4 16 16 O 1.42102 * 104.27610 * 309.41905 * 14 13 4 17 17 C 1.81398 * 104.45064 * 65.49325 * 14 13 4 18 18 C 1.52995 * 109.47441 * 185.34176 * 17 14 13 19 19 C 1.50694 * 109.47329 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00312 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00280 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00354 * 180.02562 * 21 19 18 23 23 Si 1.86810 * 119.99693 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47247 * 90.00230 * 23 21 19 25 25 H 1.48501 * 109.46892 * 210.00343 * 23 21 19 26 26 H 1.48502 * 109.46985 * 330.00195 * 23 21 19 27 27 H 1.07996 * 120.00503 * 180.27329 * 1 2 3 28 28 H 1.08006 * 119.99706 * 0.26930 * 1 2 3 29 29 H 1.08006 * 119.99706 * 179.73070 * 2 1 3 30 30 H 1.08996 * 109.47017 * 241.50716 * 3 2 1 31 31 H 1.09005 * 109.46455 * 1.50520 * 3 2 1 32 32 H 1.09001 * 109.47318 * 294.99779 * 6 4 3 33 33 H 1.09000 * 109.47386 * 55.00358 * 6 4 3 34 34 H 1.07997 * 119.99664 * 359.97438 * 8 7 6 35 35 H 1.08006 * 119.99819 * 180.22894 * 9 8 7 36 36 H 1.08005 * 120.00352 * 179.72005 * 10 9 8 37 37 H 1.08000 * 120.00060 * 179.97438 * 11 10 9 38 38 H 1.07994 * 120.00426 * 179.97438 * 12 11 10 39 39 H 0.97007 * 120.00334 * 55.73164 * 13 4 3 40 40 H 1.09001 * 109.47045 * 305.34044 * 17 14 13 41 41 H 1.09004 * 109.47222 * 65.34114 * 17 14 13 42 42 H 1.09000 * 109.47287 * 300.00324 * 18 17 14 43 43 H 1.09004 * 109.46963 * 59.99780 * 18 17 14 44 44 H 0.97004 * 120.00137 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9713 1.3698 1.2299 5 1 2.3723 1.2378 2.1309 6 6 3.6704 2.7299 1.2768 7 6 4.4683 2.8410 2.5503 8 6 3.8849 3.3669 3.6879 9 6 4.6154 3.4642 4.8574 10 6 5.9324 3.0454 4.8867 11 6 6.5174 2.5244 3.7477 12 6 5.7853 2.4218 2.5797 13 7 3.9762 0.3067 1.1516 14 16 4.1260 -0.7838 2.3889 15 8 5.2013 -1.6223 1.9887 16 8 4.2200 0.0212 3.5561 17 6 2.5624 -1.7032 2.3738 18 6 2.5226 -2.6616 3.5657 19 6 1.2233 -3.4248 3.5535 20 1 0.4985 -3.2448 2.7734 21 6 0.9598 -4.3531 4.5383 22 7 -0.1739 -5.0196 4.5274 23 14 2.2138 -4.6652 5.8874 24 1 1.9529 -3.7496 7.0271 25 1 2.1052 -6.0727 6.3481 26 1 3.5801 -4.4212 5.3592 27 1 -0.5401 -0.9352 0.0045 28 1 -0.5400 0.9354 -0.0044 29 1 1.8500 -0.9354 0.0044 30 1 2.6698 1.3745 -0.9032 31 1 1.3555 2.1334 0.0270 32 1 4.3380 2.8251 0.4204 33 1 2.9238 3.5235 1.2455 34 1 2.8574 3.6985 3.6638 35 1 4.1584 3.8717 5.7472 36 1 6.5045 3.1257 5.7992 37 1 7.5465 2.1976 3.7704 38 1 6.2424 2.0151 1.6898 39 1 4.5539 0.2415 0.3751 40 1 1.7290 -1.0039 2.4420 41 1 2.4843 -2.2722 1.4473 42 1 3.3559 -3.3609 3.4976 43 1 2.6007 -2.0925 4.4922 44 1 -0.3594 -5.6724 5.2205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416625533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:21 Heat of formation + Delta-G solvation = -64.766103 kcal Electronic energy + Delta-G solvation = -26073.320847 eV Core-core repulsion = 22502.744905 eV Total energy + Delta-G solvation = -3570.575943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.22510 -38.31975 -37.94965 -36.90578 -35.92416 -34.60976 -33.44795 -32.93453 -31.59798 -30.01842 -27.89146 -26.97891 -23.38755 -23.26575 -23.07421 -21.70899 -20.61439 -20.30377 -19.39615 -18.44475 -17.62515 -17.22850 -16.95572 -16.48606 -16.22805 -16.19035 -15.76955 -15.59147 -15.21488 -14.97447 -14.83277 -14.19917 -14.15502 -14.01857 -13.80189 -13.45733 -13.18727 -13.14976 -13.05888 -12.97196 -12.90760 -12.65220 -12.41415 -12.28063 -12.15056 -11.98500 -11.82406 -11.74591 -11.68330 -11.61193 -11.28777 -10.85547 -10.48955 -10.06930 -9.62022 -9.33882 -8.37626 -6.42502 -0.63414 0.64259 0.69063 1.28998 1.30970 1.40803 1.47127 1.88675 2.27535 2.82941 2.96326 3.04043 3.32901 3.76802 3.89927 4.00669 4.05368 4.07799 4.22981 4.26712 4.33325 4.39405 4.43468 4.50665 4.56819 4.63875 4.73366 4.80207 4.92321 5.05441 5.06149 5.06974 5.12955 5.19242 5.26764 5.36335 5.39014 5.46666 5.71781 5.77540 5.84346 5.87678 5.99552 6.16711 6.26106 6.33878 6.63129 7.21654 8.77995 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011762 B = 0.004935 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.044826 B = 5672.447333 C = 6966.326785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C -0.092 4.092 4 C 0.160 3.840 5 H 0.079 0.921 6 C -0.084 4.084 7 C -0.078 4.078 8 C -0.125 4.125 9 C -0.130 4.130 10 C -0.140 4.140 11 C -0.136 4.136 12 C -0.126 4.126 13 N -1.097 6.097 14 S 2.614 3.386 15 O -1.002 7.002 16 O -0.965 6.965 17 C -0.595 4.595 18 C -0.012 4.012 19 C -0.523 4.523 20 H 0.050 0.950 21 C 0.016 3.984 22 N -0.939 5.939 23 Si 0.920 3.080 24 H -0.261 1.261 25 H -0.273 1.273 26 H -0.253 1.253 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.426 0.574 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.024 0.976 43 H 0.030 0.970 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.324 20.574 -9.125 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.192 4.192 3 C -0.131 4.131 4 C 0.053 3.947 5 H 0.097 0.903 6 C -0.123 4.123 7 C -0.078 4.078 8 C -0.143 4.143 9 C -0.148 4.148 10 C -0.158 4.158 11 C -0.154 4.154 12 C -0.144 4.144 13 N -0.858 5.858 14 S 2.708 3.292 15 O -0.992 6.992 16 O -0.954 6.954 17 C -0.725 4.725 18 C -0.051 4.051 19 C -0.562 4.562 20 H 0.068 0.932 21 C -0.182 4.182 22 N -0.579 5.579 23 Si 0.743 3.257 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.177 1.177 27 H 0.099 0.901 28 H 0.134 0.866 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.263 0.737 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.042 0.958 43 H 0.049 0.951 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.875 20.379 -8.317 23.733 hybrid contribution -0.253 -1.216 0.378 1.298 sum 8.622 19.164 -7.939 22.464 Atomic orbital electron populations 1.24021 0.96369 1.02226 1.00637 1.23169 0.96223 0.99449 1.00363 1.21156 0.98438 0.95331 0.98153 1.20944 0.87885 0.86467 0.99428 0.90250 1.21063 0.99759 0.96594 0.94848 1.19968 0.94181 0.97483 0.96209 1.21275 1.00198 0.99938 0.92875 1.21342 0.94690 1.00171 0.98628 1.21298 0.96070 0.99892 0.98532 1.21330 1.00437 0.99750 0.93905 1.21186 0.94861 1.00053 0.98265 1.55338 1.49019 1.42936 1.38542 1.04671 0.76106 0.74130 0.74295 1.93508 1.52682 1.70062 1.82938 1.93597 1.86167 1.66717 1.48950 1.30476 1.22268 1.12252 1.07499 1.19307 0.97879 0.94667 0.93276 1.21149 1.02073 1.21268 1.11692 0.93202 1.25813 0.97052 0.95242 1.00107 1.70000 1.25368 1.26681 1.35822 0.86094 0.80752 0.78584 0.80231 1.18518 1.19768 1.17679 0.90125 0.86627 0.88387 0.88051 0.87939 0.88295 0.87300 0.84695 0.85261 0.85594 0.85916 0.85736 0.73688 0.84622 0.85042 0.95759 0.95138 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.16 14.32 67.78 0.97 -3.19 16 2 C -0.17 -3.46 7.91 25.65 0.20 -3.26 16 3 C -0.09 -1.19 5.35 29.85 0.16 -1.03 16 4 C 0.16 2.70 2.15 44.99 0.10 2.80 16 5 H 0.08 1.61 7.56 -2.39 -0.02 1.59 16 6 C -0.08 -1.16 5.03 29.85 0.15 -1.01 16 7 C -0.08 -1.69 4.02 -19.86 -0.08 -1.77 16 8 C -0.12 -2.86 9.70 22.27 0.22 -2.64 16 9 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 10 C -0.14 -3.55 10.05 22.27 0.22 -3.33 16 11 C -0.14 -3.51 10.05 22.27 0.22 -3.28 16 12 C -0.13 -3.02 8.51 22.27 0.19 -2.83 16 13 N -1.10 -22.70 4.31 -169.40 -0.73 -23.43 16 14 S 2.61 84.72 5.32 -56.49 -0.30 84.42 16 15 O -1.00 -38.54 18.08 -127.65 -2.31 -40.85 16 16 O -0.96 -35.47 15.91 -127.65 -2.03 -37.50 16 17 C -0.59 -21.73 4.78 71.98 0.34 -21.39 16 18 C -0.01 -0.59 4.05 29.84 0.12 -0.47 16 19 C -0.52 -29.78 9.66 25.60 0.25 -29.53 16 20 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 21 C 0.02 0.96 5.47 84.66 0.46 1.42 16 22 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 23 Si 0.92 44.50 27.47 68.60 1.88 46.39 16 24 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.25 -11.74 6.54 99.48 0.65 -11.09 16 27 H 0.08 2.01 8.06 -2.91 -0.02 1.99 16 28 H 0.12 1.91 7.83 -2.91 -0.02 1.89 16 29 H 0.10 2.19 6.36 -2.91 -0.02 2.18 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.93 7.79 -2.38 -0.02 0.91 16 32 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.11 1.00 8.08 -2.39 -0.02 0.98 16 34 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 36 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.12 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.43 6.62 8.92 -96.74 -0.86 5.76 16 40 H 0.14 4.56 7.19 -2.39 -0.02 4.55 16 41 H 0.13 4.49 7.26 -2.39 -0.02 4.47 16 42 H 0.02 1.17 7.20 -2.39 -0.02 1.15 16 43 H 0.03 1.44 7.57 -2.38 -0.02 1.42 16 44 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -76.77 373.54 0.63 -76.14 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.06 Total: 24.99 kcal Atomic # 6 Polarization: -76.22 SS G_CDS: 3.75 Total: -72.47 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -0.43 Total: -81.11 kcal Atomic # 8 Polarization: -74.01 SS G_CDS: -4.34 Total: -78.35 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 16 Polarization: 84.72 SS G_CDS: -0.30 Total: 84.42 kcal Total: -76.77 0.63 -76.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416625533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.371 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds