Wall clock time and date at job start Tue Mar 31 2020 14:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.52997 * 109.46882 * 240.00248 * 2 1 3 5 5 C 1.50700 * 109.47471 * 59.99722 * 4 2 1 6 6 H 1.08006 * 119.99835 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00074 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00054 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47487 * 90.00207 * 9 7 5 11 11 H 1.48501 * 109.47222 * 210.00249 * 9 7 5 12 12 H 1.48500 * 109.47294 * 329.99814 * 9 7 5 13 13 C 1.52996 * 109.47270 * 120.00307 * 2 1 3 14 14 N 1.46499 * 109.46942 * 299.99570 * 13 2 1 15 15 C 1.39675 * 120.00138 * 179.97438 * 14 13 2 16 16 C 1.38930 * 120.50755 * 0.27122 * 15 14 13 17 17 C 1.37451 * 120.35842 * 180.51836 * 16 15 14 18 18 C 1.39901 * 121.16930 * 359.76931 * 17 16 15 19 19 C 1.38336 * 117.74709 * 359.59755 * 18 17 16 20 20 C 1.37856 * 121.56759 * 0.48262 * 19 18 17 21 21 S 1.77626 * 107.83368 * 180.71166 * 19 18 17 22 22 O 1.42096 * 105.49593 * 129.47660 * 21 19 18 23 23 O 1.42105 * 105.49346 * 259.92734 * 21 19 18 24 24 C 1.83520 * 97.20896 * 14.69923 * 21 19 18 25 25 C 1.50933 * 126.49282 * 179.30571 * 18 17 16 26 26 H 1.09003 * 109.46772 * 300.00457 * 1 2 3 27 27 H 1.09000 * 109.46934 * 59.99759 * 1 2 3 28 28 H 1.08993 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46968 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47474 * 299.99911 * 3 2 1 31 31 H 1.08998 * 109.47499 * 60.00548 * 3 2 1 32 32 H 1.08998 * 109.47090 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.46883 * 299.99951 * 4 2 1 34 34 H 0.97002 * 120.00365 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47094 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47256 * 59.99582 * 13 2 1 37 37 H 0.97005 * 120.00112 * 0.02562 * 14 13 2 38 38 H 1.07994 * 119.82344 * 0.22350 * 16 15 14 39 39 H 1.08004 * 119.41907 * 179.78280 * 17 16 15 40 40 H 1.08002 * 119.91211 * 179.78610 * 20 19 18 41 41 H 1.08997 * 111.19581 * 93.66937 * 24 21 19 42 42 H 1.09000 * 111.19567 * 217.97900 * 24 21 19 43 43 H 1.08999 * 109.20655 * 39.46932 * 25 18 17 44 44 H 1.09002 * 109.13585 * 280.17233 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 2.2272 1.4412 -5.6609 11 1 1.0842 -0.5794 -6.3617 12 1 -0.0593 1.0369 -4.9616 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4453 15 6 1.8888 -0.5082 3.7139 16 6 2.6910 -1.6339 3.8537 17 6 3.0120 -2.1073 5.1035 18 6 2.5478 -1.4715 6.2599 19 6 1.7612 -0.3443 6.1035 20 6 1.4318 0.1383 4.8549 21 16 1.3409 0.2546 7.7221 22 8 1.6640 1.6383 7.7107 23 8 0.0206 -0.2101 7.9678 24 6 2.5831 -0.7197 8.6579 25 6 2.8126 -1.8940 7.6845 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6766 -1.7488 -1.2493 34 1 2.8615 -1.8822 -4.7337 35 1 3.1301 -0.7217 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9939 0.7578 2.3564 38 1 3.0605 -2.1424 2.9755 39 1 3.6338 -2.9857 5.1944 40 1 0.8129 1.0187 4.7639 41 1 3.4990 -0.1486 8.8095 42 1 2.1769 -1.0677 9.6076 43 1 3.8442 -2.2353 7.7714 44 1 2.1413 -2.7123 7.9451 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419784450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:09 Heat of formation + Delta-G solvation = -53.225647 kcal Electronic energy + Delta-G solvation = -24789.832209 eV Core-core repulsion = 21219.756698 eV Total energy + Delta-G solvation = -3570.075511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.87870 -37.86623 -37.28530 -36.15269 -35.56689 -33.29894 -32.14628 -31.17257 -28.76578 -27.04589 -26.56336 -26.13158 -24.26570 -23.35522 -22.70132 -21.19900 -19.12692 -18.37524 -17.61431 -16.98643 -16.44813 -16.39502 -15.97143 -15.45010 -15.09615 -14.69050 -14.53856 -14.49956 -14.12158 -13.72268 -13.40463 -13.19701 -13.11238 -12.87016 -12.64709 -12.34057 -12.25961 -12.22077 -12.11690 -12.02238 -11.81396 -11.28085 -11.06972 -10.94788 -10.89527 -10.70566 -10.50608 -10.41098 -10.30268 -10.13703 -9.79593 -9.34197 -9.28126 -9.00525 -8.42169 -7.36060 -6.06616 -4.07736 -0.16195 0.86596 1.31058 2.46905 3.27095 3.29203 3.34341 3.36335 3.50002 3.58804 3.82882 4.04569 4.26723 4.40435 4.64371 4.72473 5.00688 5.05434 5.18195 5.22835 5.29275 5.30418 5.39521 5.49511 5.51108 5.66731 5.72442 5.91673 6.03381 6.09276 6.11642 6.19093 6.24761 6.30358 6.54156 6.57697 6.62639 6.97040 7.00737 7.03432 7.36331 7.54352 7.66692 7.78620 7.91755 8.33988 8.96755 9.55943 11.04891 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.032137 B = 0.002365 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.070212 B =11835.674060 C =12333.079816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.129 3.871 14 N -0.731 5.731 15 C 0.217 3.783 16 C -0.153 4.153 17 C -0.063 4.063 18 C -0.124 4.124 19 C -0.576 4.576 20 C -0.086 4.086 21 S 2.468 3.532 22 O -0.936 6.936 23 O -0.931 6.931 24 C -0.573 4.573 25 C -0.077 4.077 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.402 0.598 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.099 0.901 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 -0.697 24.182 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.005 3.995 14 N -0.359 5.359 15 C 0.109 3.891 16 C -0.176 4.176 17 C -0.083 4.083 18 C -0.128 4.128 19 C -0.664 4.664 20 C -0.110 4.110 21 S 2.649 3.351 22 O -0.933 6.933 23 O -0.928 6.928 24 C -0.703 4.703 25 C -0.115 4.115 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.239 0.761 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.118 0.882 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.970 -0.262 24.113 24.133 hybrid contribution 0.233 -0.044 -1.498 1.517 sum 1.203 -0.305 22.615 22.649 Atomic orbital electron populations 1.21756 0.95174 1.01154 1.00360 1.20871 0.95568 0.95908 0.94771 1.21754 1.00464 0.95863 1.00363 1.19091 0.96243 0.95172 0.89571 1.21175 1.31231 1.12086 0.90496 0.92256 1.25003 0.95273 0.95055 0.99123 1.69951 1.37000 1.23027 1.23512 0.86640 0.79237 0.79431 0.82972 1.20731 1.21296 1.19917 1.21689 0.98281 0.95896 0.83606 1.45094 1.56040 1.32644 1.02075 1.17945 0.92755 0.92567 0.85806 1.20739 1.01431 0.97381 0.98058 1.20625 0.98226 0.98804 0.90599 1.20058 1.01147 0.96809 0.94784 1.29908 1.10896 1.08368 1.17260 1.19557 1.02068 1.00384 0.89029 1.06558 0.76412 0.75323 0.76797 1.93601 1.85035 1.29001 1.85700 1.93637 1.32464 1.82329 1.84399 1.30293 1.18056 1.11849 1.10122 1.20495 1.05780 0.97108 0.88110 0.95143 0.91418 0.93399 0.93402 0.91435 0.95122 0.96419 0.96405 0.93007 0.92317 0.92314 0.76143 0.84911 0.85735 0.85512 0.83794 0.83775 0.88235 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.28 0.54 -154.51 -0.08 -1.36 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.30 7.65 -34.44 -0.26 -13.56 16 6 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.13 2.00 3.82 -4.04 -0.02 1.99 16 14 N -0.73 -10.05 5.14 -58.64 -0.30 -10.35 16 15 C 0.22 2.91 6.66 -83.79 -0.56 2.35 16 16 C -0.15 -1.88 9.29 -39.61 -0.37 -2.25 16 17 C -0.06 -0.65 9.96 -39.25 -0.39 -1.05 16 18 C -0.12 -1.23 5.97 -103.85 -0.62 -1.85 16 19 C -0.58 -6.70 6.15 -39.68 -0.24 -6.94 16 20 C -0.09 -1.12 9.89 -39.48 -0.39 -1.51 16 21 S 2.47 24.12 6.15 -107.50 -0.66 23.46 16 22 O -0.94 -12.07 18.01 -57.36 -1.03 -13.10 16 23 O -0.93 -11.97 18.01 -57.36 -1.03 -13.00 16 24 C -0.57 -2.87 7.66 37.81 0.29 -2.58 16 25 C -0.08 -0.47 6.25 -27.11 -0.17 -0.64 16 26 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 27 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 35 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 36 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 37 H 0.40 5.21 6.19 -40.82 -0.25 4.96 16 38 H 0.13 1.56 6.78 -52.49 -0.36 1.20 16 39 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.14 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.14 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -33.69 362.00 -10.78 -44.47 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.50 Total: 1.27 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: -2.43 Total: -29.02 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.44 Total: -35.46 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -2.07 Total: -26.11 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 24.12 SS G_CDS: -0.66 Total: 23.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.69 -10.78 -44.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419784450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.754 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds