Wall clock time and date at job start Tue Mar 31 2020 14:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.52997 * 109.46882 * 240.00248 * 2 1 3 5 5 C 1.50700 * 109.47471 * 59.99722 * 4 2 1 6 6 H 1.08006 * 119.99835 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00074 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00054 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47487 * 90.00207 * 9 7 5 11 11 H 1.48501 * 109.47222 * 210.00249 * 9 7 5 12 12 H 1.48500 * 109.47294 * 329.99814 * 9 7 5 13 13 C 1.52996 * 109.47270 * 120.00307 * 2 1 3 14 14 N 1.46499 * 109.46942 * 299.99570 * 13 2 1 15 15 C 1.39675 * 120.00138 * 179.97438 * 14 13 2 16 16 C 1.38930 * 120.50755 * 0.27122 * 15 14 13 17 17 C 1.37451 * 120.35842 * 180.51836 * 16 15 14 18 18 C 1.39901 * 121.16930 * 359.76931 * 17 16 15 19 19 C 1.38336 * 117.74709 * 359.59755 * 18 17 16 20 20 C 1.37856 * 121.56759 * 0.48262 * 19 18 17 21 21 S 1.77626 * 107.83368 * 180.71166 * 19 18 17 22 22 O 1.42096 * 105.49593 * 129.47660 * 21 19 18 23 23 O 1.42105 * 105.49346 * 259.92734 * 21 19 18 24 24 C 1.83520 * 97.20896 * 14.69923 * 21 19 18 25 25 C 1.50933 * 126.49282 * 179.30571 * 18 17 16 26 26 H 1.09003 * 109.46772 * 300.00457 * 1 2 3 27 27 H 1.09000 * 109.46934 * 59.99759 * 1 2 3 28 28 H 1.08993 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46968 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47474 * 299.99911 * 3 2 1 31 31 H 1.08998 * 109.47499 * 60.00548 * 3 2 1 32 32 H 1.08998 * 109.47090 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.46883 * 299.99951 * 4 2 1 34 34 H 0.97002 * 120.00365 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47094 * 179.97438 * 13 2 1 36 36 H 1.09001 * 109.47256 * 59.99582 * 13 2 1 37 37 H 0.97005 * 120.00112 * 0.02562 * 14 13 2 38 38 H 1.07994 * 119.82344 * 0.22350 * 16 15 14 39 39 H 1.08004 * 119.41907 * 179.78280 * 17 16 15 40 40 H 1.08002 * 119.91211 * 179.78610 * 20 19 18 41 41 H 1.08997 * 111.19581 * 93.66937 * 24 21 19 42 42 H 1.09000 * 111.19567 * 217.97900 * 24 21 19 43 43 H 1.08999 * 109.20655 * 39.46932 * 25 18 17 44 44 H 1.09002 * 109.13585 * 280.17233 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 2.2272 1.4412 -5.6609 11 1 1.0842 -0.5794 -6.3617 12 1 -0.0593 1.0369 -4.9616 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4453 15 6 1.8888 -0.5082 3.7139 16 6 2.6910 -1.6339 3.8537 17 6 3.0120 -2.1073 5.1035 18 6 2.5478 -1.4715 6.2599 19 6 1.7612 -0.3443 6.1035 20 6 1.4318 0.1383 4.8549 21 16 1.3409 0.2546 7.7221 22 8 1.6640 1.6383 7.7107 23 8 0.0206 -0.2101 7.9678 24 6 2.5831 -0.7197 8.6579 25 6 2.8126 -1.8940 7.6845 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6766 -1.7488 -1.2493 34 1 2.8615 -1.8822 -4.7337 35 1 3.1301 -0.7217 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9939 0.7578 2.3564 38 1 3.0605 -2.1424 2.9755 39 1 3.6338 -2.9857 5.1944 40 1 0.8129 1.0187 4.7639 41 1 3.4990 -0.1486 8.8095 42 1 2.1769 -1.0677 9.6076 43 1 3.8442 -2.2353 7.7714 44 1 2.1413 -2.7123 7.9451 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419784450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:09 Heat of formation + Delta-G solvation = -76.053748 kcal Electronic energy + Delta-G solvation = -24790.822110 eV Core-core repulsion = 21219.756698 eV Total energy + Delta-G solvation = -3571.065412 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.78995 -39.15357 -38.13593 -37.00412 -36.58221 -34.73460 -33.59289 -32.03428 -29.83765 -28.76718 -28.01555 -27.32033 -25.34011 -24.29752 -24.10388 -22.05339 -19.97053 -19.79105 -18.54440 -18.39142 -17.77107 -17.13192 -17.02280 -16.58035 -16.28024 -15.89224 -15.84671 -15.28509 -15.14519 -14.82329 -14.53703 -14.48575 -14.27274 -13.97758 -13.82733 -13.65287 -13.22601 -13.19950 -13.08761 -12.97786 -12.82020 -12.76188 -12.64584 -12.40986 -12.36685 -12.22999 -11.98891 -11.67381 -11.58882 -11.22778 -10.99993 -10.89676 -10.87629 -10.52798 -10.21535 -8.34927 -8.16713 -6.23345 -0.84254 -0.01587 0.44762 1.39946 1.40705 1.50496 1.73860 2.37551 2.46382 2.58669 2.74282 3.18064 3.28136 3.49149 3.69075 3.83260 3.95162 4.06518 4.11468 4.20513 4.22316 4.41617 4.52723 4.64382 4.67718 4.71053 4.72293 4.85432 4.88714 4.92510 4.96800 5.07175 5.07477 5.10319 5.26027 5.37237 5.40254 5.45765 5.48094 5.52564 5.74762 5.77429 5.87780 6.25110 6.35477 6.75290 6.91159 7.44127 8.95499 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.032137 B = 0.002365 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.070212 B =11835.674060 C =12333.079816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.043 3.957 5 C -0.516 4.516 6 H 0.066 0.934 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.264 1.264 13 C 0.146 3.854 14 N -0.734 5.734 15 C 0.195 3.805 16 C -0.166 4.166 17 C -0.068 4.068 18 C -0.112 4.112 19 C -0.600 4.600 20 C -0.109 4.109 21 S 2.458 3.542 22 O -0.979 6.979 23 O -0.972 6.972 24 C -0.525 4.525 25 C -0.084 4.084 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.060 0.940 32 H -0.009 1.009 33 H -0.009 1.009 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.404 0.596 38 H 0.131 0.869 39 H 0.157 0.843 40 H 0.125 0.875 41 H 0.172 0.828 42 H 0.184 0.816 43 H 0.134 0.866 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -1.108 27.088 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.005 3.995 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.188 1.188 13 C 0.021 3.979 14 N -0.363 5.363 15 C 0.089 3.911 16 C -0.189 4.189 17 C -0.087 4.087 18 C -0.116 4.116 19 C -0.687 4.687 20 C -0.133 4.133 21 S 2.644 3.356 22 O -0.976 6.976 23 O -0.970 6.970 24 C -0.660 4.660 25 C -0.122 4.122 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.241 0.759 38 H 0.149 0.851 39 H 0.174 0.826 40 H 0.143 0.857 41 H 0.190 0.810 42 H 0.202 0.798 43 H 0.152 0.848 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.647 -0.636 27.015 27.073 hybrid contribution 0.091 -0.008 -2.226 2.228 sum 1.738 -0.644 24.789 24.858 Atomic orbital electron populations 1.21674 0.94321 1.00875 1.00968 1.20675 0.96159 0.96107 0.93553 1.21673 1.00002 0.95165 1.00993 1.18947 0.94470 0.94225 0.91839 1.21582 1.30441 1.11995 0.91374 0.91595 1.25862 0.95689 0.95852 1.02446 1.70085 1.38678 1.24752 1.24110 0.85612 0.79049 0.78251 0.79137 1.20177 1.21311 1.18846 1.21290 0.97833 0.95349 0.83378 1.44814 1.56890 1.32919 1.01681 1.18075 0.94033 0.93530 0.85485 1.20957 1.01470 0.97244 0.99242 1.21009 0.98178 0.99629 0.89928 1.20660 0.98744 0.95173 0.96991 1.30252 1.11352 1.09502 1.17596 1.19712 1.02851 1.00886 0.89815 1.06810 0.77040 0.75090 0.76627 1.93540 1.85631 1.32282 1.86171 1.93579 1.36109 1.82607 1.84656 1.30200 1.16038 1.09567 1.10220 1.20758 1.08434 0.97723 0.85260 0.92176 0.93048 0.94139 0.94082 0.93026 0.92154 0.99032 0.99066 0.93097 0.92799 0.92902 0.75886 0.85107 0.82579 0.85704 0.81010 0.79811 0.84800 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 2 C -0.06 -2.39 0.54 -52.18 -0.03 -2.42 16 3 C -0.12 -4.20 8.05 71.98 0.58 -3.62 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.52 -27.47 7.65 25.60 0.20 -27.27 16 6 H 0.07 3.36 5.68 -2.91 -0.02 3.35 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 8 N -0.94 -55.64 13.29 21.45 0.28 -55.35 16 9 Si 0.95 43.53 29.54 68.60 2.03 45.55 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 13 C 0.15 4.66 3.82 86.38 0.33 4.99 16 14 N -0.73 -20.39 5.14 -339.44 -1.74 -22.14 16 15 C 0.19 5.26 6.66 38.21 0.25 5.52 16 16 C -0.17 -4.02 9.29 22.25 0.21 -3.81 16 17 C -0.07 -1.26 9.96 22.49 0.22 -1.03 16 18 C -0.11 -1.88 5.97 -19.36 -0.12 -2.00 16 19 C -0.60 -13.41 6.15 22.20 0.14 -13.27 16 20 C -0.11 -2.88 9.89 22.33 0.22 -2.66 16 21 S 2.46 44.80 6.15 -56.49 -0.35 44.45 16 22 O -0.98 -25.18 18.01 -127.82 -2.30 -27.49 16 23 O -0.97 -24.61 18.01 -127.82 -2.30 -26.92 16 24 C -0.53 -2.42 7.66 72.41 0.55 -1.87 16 25 C -0.08 -0.55 6.25 30.35 0.19 -0.36 16 26 H 0.06 1.73 6.86 -2.39 -0.02 1.71 16 27 H 0.05 1.94 6.62 -2.39 -0.02 1.93 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 31 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.05 1.75 7.96 -2.39 -0.02 1.73 16 36 H 0.05 1.73 7.98 -2.39 -0.02 1.71 16 37 H 0.40 10.45 6.19 -92.70 -0.57 9.88 16 38 H 0.13 3.10 6.78 -2.91 -0.02 3.08 16 39 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.17 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.18 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -77.47 362.00 -0.04 -77.51 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.44 Total: 13.22 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 3.91 Total: -48.84 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -1.46 Total: -77.49 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -4.60 Total: -54.40 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 44.80 SS G_CDS: -0.35 Total: 44.45 kcal Total: -77.47 -0.04 -77.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419784450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.452 kcal (2) G-P(sol) polarization free energy of solvation -77.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds