Wall clock time and date at job start Tue Mar 31 2020 14:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47306 * 2 1 4 4 C 1.53003 * 109.46785 * 119.99729 * 2 1 3 5 5 C 1.53001 * 109.47311 * 304.99704 * 4 2 1 6 6 C 1.53003 * 109.46899 * 184.99602 * 4 2 1 7 7 O 1.42898 * 109.47444 * 300.00201 * 6 4 2 8 8 N 1.46493 * 109.47060 * 64.99884 * 4 2 1 9 9 C 1.34783 * 120.00266 * 179.97438 * 8 4 2 10 10 O 1.21554 * 119.99505 * 0.02562 * 9 8 4 11 11 C 1.47857 * 120.00551 * 180.02562 * 9 8 4 12 12 C 1.39683 * 120.10031 * 0.02562 * 11 9 8 13 13 C 1.38039 * 120.04013 * 179.97438 * 12 11 9 14 14 C 1.38176 * 120.24026 * 359.67736 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.59964 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76206 * 100.00127 * 265.25129 * 16 15 14 18 18 H 1.07994 * 120.00039 * 5.12620 * 17 16 15 19 19 C 1.38732 * 119.99565 * 185.12088 * 17 16 15 20 20 N 1.31631 * 119.99351 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00533 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46962 * 89.99756 * 21 19 17 23 23 H 1.48502 * 109.47274 * 210.00026 * 21 19 17 24 24 H 1.48499 * 109.47299 * 330.00015 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08996 * 109.46725 * 59.99810 * 1 2 3 27 27 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46903 * 300.00208 * 1 2 3 29 29 H 1.08995 * 109.46787 * 239.99273 * 2 1 3 30 30 H 1.09001 * 109.47358 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46869 * 299.99793 * 3 2 1 32 32 H 1.08998 * 109.47255 * 59.99369 * 3 2 1 33 33 H 1.08998 * 109.47202 * 180.02562 * 5 4 2 34 34 H 1.08996 * 109.46977 * 300.00554 * 5 4 2 35 35 H 1.08996 * 109.46715 * 60.00455 * 5 4 2 36 36 H 1.09005 * 109.46510 * 60.00349 * 6 4 2 37 37 H 1.08998 * 109.47101 * 180.02562 * 6 4 2 38 38 H 0.96698 * 114.00087 * 179.97438 * 7 6 4 39 39 H 0.97000 * 120.00523 * 0.02562 * 8 4 2 40 40 H 1.08002 * 119.97685 * 359.97438 * 12 11 9 41 41 H 1.07999 * 119.87763 * 179.97438 * 13 12 11 42 42 H 1.08006 * 119.89818 * 180.31426 * 14 13 12 43 43 H 0.96995 * 120.00040 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.12344 * 180.29777 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4299 -0.0761 2.4954 6 6 3.5648 -0.6134 1.3137 7 8 4.1346 -1.2158 0.1500 8 7 1.6524 -2.1327 1.1907 9 6 1.9963 -2.9682 2.1909 10 8 2.6277 -2.5503 3.1418 11 6 1.6056 -4.3930 2.1315 12 6 0.8804 -4.8756 1.0396 13 6 0.5168 -6.2061 0.9851 14 6 0.8732 -7.0672 2.0053 15 6 1.5907 -6.5959 3.1008 16 16 2.0357 -7.6966 4.4028 17 6 0.6957 -7.4159 5.5121 18 1 -0.1220 -6.7740 5.2197 19 6 0.6913 -8.0196 6.7612 20 7 -0.3099 -7.8103 7.5897 21 14 2.1061 -9.1293 7.2673 22 1 3.1552 -8.3195 7.9373 23 1 1.6092 -10.1687 8.2044 24 1 2.6786 -9.7820 6.0626 25 6 1.9605 -5.2588 3.1645 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.7936 -0.5896 3.3854 34 1 1.7183 0.9741 2.5389 35 1 0.3437 -0.1531 2.4494 36 1 3.8532 0.4370 1.3574 37 1 3.9282 -1.1275 2.2035 38 1 5.1007 -1.1836 0.1233 39 1 1.1488 -2.4664 0.4317 40 1 0.6042 -4.2073 0.2374 41 1 -0.0442 -6.5764 0.1398 42 1 0.5901 -8.1083 1.9546 43 1 -0.3129 -8.2320 8.4632 44 1 2.5214 -4.8913 4.0110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427386326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:14 Heat of formation + Delta-G solvation = -70.006095 kcal Electronic energy + Delta-G solvation = -25203.803580 eV Core-core repulsion = 21633.000414 eV Total energy + Delta-G solvation = -3570.803166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62589 -38.72254 -37.33360 -35.92404 -33.46827 -32.48993 -31.27651 -30.59409 -29.66683 -27.78575 -26.12229 -25.67085 -24.17366 -22.95318 -22.24087 -20.23825 -19.22546 -18.31242 -17.45529 -17.37118 -16.25897 -15.98131 -15.38990 -15.28309 -15.06691 -14.92615 -14.45991 -14.41581 -13.78992 -13.58731 -13.41281 -13.20382 -13.02068 -12.89311 -12.67435 -12.44341 -12.23960 -12.10573 -11.90128 -11.67980 -11.37991 -11.33103 -11.17511 -11.09349 -10.93065 -10.66294 -10.60507 -10.17579 -9.90655 -9.46540 -9.18415 -9.07074 -9.05509 -8.60539 -8.13315 -7.12231 -6.32148 -4.07388 1.14760 1.62375 2.86911 3.09252 3.13077 3.27709 3.39281 3.51526 4.02579 4.11148 4.27110 4.35847 4.56513 4.74369 4.83090 4.91342 5.05822 5.06081 5.08194 5.13485 5.21152 5.26350 5.35684 5.36588 5.48268 5.58400 5.60634 5.63335 5.69863 5.73660 5.81511 5.83867 5.93548 5.95444 6.03154 6.21335 6.29844 6.51868 6.56561 6.60715 6.85638 7.14224 7.46626 7.58506 7.92135 8.35241 8.45590 9.11797 10.77353 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.002980 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.743459 B = 9393.549880 C = 9654.669220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.188 3.812 5 C -0.171 4.171 6 C 0.058 3.942 7 O -0.568 6.568 8 N -0.714 5.714 9 C 0.569 3.431 10 O -0.536 6.536 11 C -0.151 4.151 12 C -0.085 4.085 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.085 4.085 16 S -0.113 6.113 17 C -0.508 4.508 18 H 0.091 0.909 19 C 0.095 3.905 20 N -0.876 5.876 21 Si 0.858 3.142 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.017 4.017 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.376 0.624 39 H 0.398 0.602 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.272 0.728 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.011 15.546 -17.990 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.204 4.204 4 C 0.102 3.898 5 C -0.228 4.228 6 C -0.020 4.020 7 O -0.372 6.372 8 N -0.366 5.366 9 C 0.358 3.642 10 O -0.414 6.414 11 C -0.156 4.156 12 C -0.104 4.104 13 C -0.159 4.159 14 C -0.074 4.074 15 C -0.196 4.196 16 S 0.121 5.879 17 C -0.655 4.655 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.513 5.513 21 Si 0.683 3.317 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.039 4.039 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.222 0.778 39 H 0.234 0.766 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.150 0.850 43 H 0.082 0.918 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.651 14.976 -17.099 23.201 hybrid contribution -0.333 0.334 0.063 0.476 sum 4.318 15.310 -17.036 23.308 Atomic orbital electron populations 1.21972 0.94842 1.02050 1.02214 1.21260 0.95895 0.96660 0.97442 1.21910 1.01375 0.95058 1.02054 1.20307 0.92461 0.80976 0.96037 1.22306 1.01467 1.00667 0.98389 1.22747 0.93380 0.96863 0.89040 1.86431 1.24877 1.82543 1.43394 1.45867 1.58249 1.08746 1.23758 1.18290 0.78476 0.85597 0.81815 1.90688 1.39981 1.77401 1.33347 1.19869 1.04806 0.93185 0.97746 1.21178 0.96855 0.95914 0.96470 1.21040 1.01979 0.93412 0.99502 1.21883 0.93250 1.00110 0.92125 1.22175 1.01024 0.96915 0.99481 1.83059 1.37829 1.50917 1.16131 1.22245 1.05820 1.36042 1.01387 0.89109 1.24745 0.96120 0.95623 0.94918 1.69930 1.30681 1.42489 1.08157 0.86730 0.82740 0.81358 0.80915 1.19045 1.19816 1.16331 1.21872 0.94124 0.91640 0.96236 0.92419 0.92611 0.91913 0.89899 0.92173 0.92359 0.92235 0.89889 0.91607 0.91440 0.93025 0.91124 0.77781 0.76605 0.86440 0.85678 0.84967 0.91826 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.58 37.16 0.32 -0.82 16 2 C -0.09 -0.77 2.10 -90.62 -0.19 -0.96 16 3 C -0.15 -1.02 8.46 37.16 0.31 -0.70 16 4 C 0.19 1.99 0.32 -131.82 -0.04 1.95 16 5 C -0.17 -1.86 7.67 37.16 0.28 -1.58 16 6 C 0.06 0.63 5.25 37.16 0.19 0.83 16 7 O -0.57 -5.92 12.94 -35.23 -0.46 -6.38 16 8 N -0.71 -8.64 4.65 -48.53 -0.23 -8.86 16 9 C 0.57 9.12 7.19 -12.32 -0.09 9.03 16 10 O -0.54 -10.03 12.55 5.32 0.07 -9.97 16 11 C -0.15 -2.56 5.87 -105.00 -0.62 -3.17 16 12 C -0.09 -1.19 9.54 -39.12 -0.37 -1.56 16 13 C -0.14 -2.00 10.02 -39.68 -0.40 -2.40 16 14 C -0.05 -0.93 9.79 -39.25 -0.38 -1.32 16 15 C -0.09 -1.80 5.45 -39.00 -0.21 -2.01 16 16 S -0.11 -2.77 19.38 -107.50 -2.08 -4.85 16 17 C -0.51 -14.67 10.01 30.91 0.31 -14.36 16 18 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 19 C 0.09 2.75 5.50 -17.45 -0.10 2.65 16 20 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 21 Si 0.86 21.14 27.74 -169.99 -4.71 16.42 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 25 C -0.02 -0.35 9.34 -38.92 -0.36 -0.71 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.42 7.18 -51.93 -0.37 0.05 16 28 H 0.06 0.47 6.35 -51.93 -0.33 0.15 16 29 H 0.08 0.74 7.84 -51.93 -0.41 0.34 16 30 H 0.06 0.42 6.35 -51.93 -0.33 0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 33 H 0.08 1.16 6.17 -51.93 -0.32 0.84 16 34 H 0.07 0.58 6.56 -51.93 -0.34 0.24 16 35 H 0.07 0.71 6.34 -51.93 -0.33 0.38 16 36 H 0.05 0.45 6.35 -51.93 -0.33 0.13 16 37 H 0.07 0.96 6.16 -51.93 -0.32 0.64 16 38 H 0.38 2.52 9.12 45.56 0.42 2.94 16 39 H 0.40 4.03 5.68 -40.82 -0.23 3.80 16 40 H 0.12 1.20 6.40 -52.49 -0.34 0.86 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.13 2.21 8.06 -52.48 -0.42 1.78 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.14 3.02 7.65 -52.49 -0.40 2.62 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -33.35 360.68 -7.79 -41.13 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.24 Total: 7.87 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.34 Total: -15.14 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.55 Total: -34.52 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.39 Total: -16.35 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.42 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.08 Total: -4.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.35 -7.79 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427386326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.874 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds