Wall clock time and date at job start Tue Mar 31 2020 14:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47306 * 2 1 4 4 C 1.53003 * 109.46785 * 119.99729 * 2 1 3 5 5 C 1.53001 * 109.47311 * 304.99704 * 4 2 1 6 6 C 1.53003 * 109.46899 * 184.99602 * 4 2 1 7 7 O 1.42898 * 109.47444 * 300.00201 * 6 4 2 8 8 N 1.46493 * 109.47060 * 64.99884 * 4 2 1 9 9 C 1.34783 * 120.00266 * 179.97438 * 8 4 2 10 10 O 1.21554 * 119.99505 * 0.02562 * 9 8 4 11 11 C 1.47857 * 120.00551 * 180.02562 * 9 8 4 12 12 C 1.39683 * 120.10031 * 0.02562 * 11 9 8 13 13 C 1.38039 * 120.04013 * 179.97438 * 12 11 9 14 14 C 1.38176 * 120.24026 * 359.67736 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.59964 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76206 * 100.00127 * 265.25129 * 16 15 14 18 18 H 1.07994 * 120.00039 * 5.12620 * 17 16 15 19 19 C 1.38732 * 119.99565 * 185.12088 * 17 16 15 20 20 N 1.31631 * 119.99351 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00533 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46962 * 89.99756 * 21 19 17 23 23 H 1.48502 * 109.47274 * 210.00026 * 21 19 17 24 24 H 1.48499 * 109.47299 * 330.00015 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08996 * 109.46725 * 59.99810 * 1 2 3 27 27 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46903 * 300.00208 * 1 2 3 29 29 H 1.08995 * 109.46787 * 239.99273 * 2 1 3 30 30 H 1.09001 * 109.47358 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46869 * 299.99793 * 3 2 1 32 32 H 1.08998 * 109.47255 * 59.99369 * 3 2 1 33 33 H 1.08998 * 109.47202 * 180.02562 * 5 4 2 34 34 H 1.08996 * 109.46977 * 300.00554 * 5 4 2 35 35 H 1.08996 * 109.46715 * 60.00455 * 5 4 2 36 36 H 1.09005 * 109.46510 * 60.00349 * 6 4 2 37 37 H 1.08998 * 109.47101 * 180.02562 * 6 4 2 38 38 H 0.96698 * 114.00087 * 179.97438 * 7 6 4 39 39 H 0.97000 * 120.00523 * 0.02562 * 8 4 2 40 40 H 1.08002 * 119.97685 * 359.97438 * 12 11 9 41 41 H 1.07999 * 119.87763 * 179.97438 * 13 12 11 42 42 H 1.08006 * 119.89818 * 180.31426 * 14 13 12 43 43 H 0.96995 * 120.00040 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.12344 * 180.29777 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4299 -0.0761 2.4954 6 6 3.5648 -0.6134 1.3137 7 8 4.1346 -1.2158 0.1500 8 7 1.6524 -2.1327 1.1907 9 6 1.9963 -2.9682 2.1909 10 8 2.6277 -2.5503 3.1418 11 6 1.6056 -4.3930 2.1315 12 6 0.8804 -4.8756 1.0396 13 6 0.5168 -6.2061 0.9851 14 6 0.8732 -7.0672 2.0053 15 6 1.5907 -6.5959 3.1008 16 16 2.0357 -7.6966 4.4028 17 6 0.6957 -7.4159 5.5121 18 1 -0.1220 -6.7740 5.2197 19 6 0.6913 -8.0196 6.7612 20 7 -0.3099 -7.8103 7.5897 21 14 2.1061 -9.1293 7.2673 22 1 3.1552 -8.3195 7.9373 23 1 1.6092 -10.1687 8.2044 24 1 2.6786 -9.7820 6.0626 25 6 1.9605 -5.2588 3.1645 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.7936 -0.5896 3.3854 34 1 1.7183 0.9741 2.5389 35 1 0.3437 -0.1531 2.4494 36 1 3.8532 0.4370 1.3574 37 1 3.9282 -1.1275 2.2035 38 1 5.1007 -1.1836 0.1233 39 1 1.1488 -2.4664 0.4317 40 1 0.6042 -4.2073 0.2374 41 1 -0.0442 -6.5764 0.1398 42 1 0.5901 -8.1083 1.9546 43 1 -0.3129 -8.2320 8.4632 44 1 2.5214 -4.8913 4.0110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427386326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:13 Heat of formation + Delta-G solvation = -94.172956 kcal Electronic energy + Delta-G solvation = -25204.851534 eV Core-core repulsion = 21633.000414 eV Total energy + Delta-G solvation = -3571.851119 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71815 -39.88363 -38.51000 -36.72242 -34.72760 -34.51848 -32.41927 -31.95383 -30.66802 -28.41856 -27.93112 -26.94462 -25.29254 -24.04702 -23.48616 -21.45312 -20.22972 -19.92682 -18.93079 -18.26755 -17.35712 -17.15664 -17.13439 -16.67171 -16.25079 -15.99866 -15.76483 -15.58697 -15.03422 -14.94360 -14.71357 -14.35131 -14.04726 -13.84398 -13.76431 -13.60390 -13.39990 -13.19374 -13.08571 -12.96394 -12.93601 -12.64126 -12.37241 -12.29144 -12.00150 -11.86323 -11.66790 -11.40188 -11.23319 -11.11858 -10.99558 -10.52325 -10.19239 -9.91363 -9.75175 -9.15432 -8.54854 -6.29064 -0.20359 0.20168 1.05399 1.30419 1.43150 1.64706 1.80859 2.07203 2.20895 2.59947 2.83267 2.96508 3.25961 3.54608 3.74850 3.84275 3.90471 3.98438 4.12623 4.30313 4.32616 4.41334 4.42199 4.53516 4.56132 4.64952 4.69466 4.73368 4.86226 4.88805 4.95619 5.00920 5.05364 5.15762 5.20184 5.26153 5.29315 5.40758 5.43303 5.52961 5.58612 5.67917 5.82154 6.09094 6.53016 6.81585 6.87514 7.18902 8.58898 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.002980 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.743459 B = 9393.549880 C = 9654.669220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 C -0.146 4.146 4 C 0.182 3.818 5 C -0.168 4.168 6 C 0.061 3.939 7 O -0.576 6.576 8 N -0.695 5.695 9 C 0.565 3.435 10 O -0.572 6.572 11 C -0.158 4.158 12 C -0.062 4.062 13 C -0.121 4.121 14 C -0.060 4.060 15 C -0.118 4.118 16 S -0.115 6.115 17 C -0.524 4.524 18 H 0.045 0.955 19 C 0.041 3.959 20 N -0.920 5.920 21 Si 0.922 3.078 22 H -0.262 1.262 23 H -0.257 1.257 24 H -0.226 1.226 25 C -0.043 4.043 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.391 0.609 39 H 0.410 0.590 40 H 0.168 0.832 41 H 0.176 0.824 42 H 0.140 0.860 43 H 0.278 0.722 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 16.366 -21.613 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 C -0.204 4.204 4 C 0.096 3.904 5 C -0.226 4.226 6 C -0.017 4.017 7 O -0.383 6.383 8 N -0.347 5.347 9 C 0.353 3.647 10 O -0.453 6.453 11 C -0.163 4.163 12 C -0.081 4.081 13 C -0.141 4.141 14 C -0.081 4.081 15 C -0.229 4.229 16 S 0.119 5.881 17 C -0.670 4.670 18 H 0.063 0.937 19 C -0.164 4.164 20 N -0.557 5.557 21 Si 0.743 3.257 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.150 1.150 25 C -0.064 4.064 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.240 0.760 39 H 0.248 0.752 40 H 0.186 0.814 41 H 0.194 0.806 42 H 0.158 0.842 43 H 0.088 0.912 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.538 15.811 -20.770 26.495 hybrid contribution -0.360 0.261 1.010 1.103 sum 4.178 16.072 -19.760 25.811 Atomic orbital electron populations 1.21991 0.94006 1.02273 1.02879 1.21206 0.96484 0.97039 0.95552 1.21922 1.01347 0.94153 1.02946 1.20543 0.92539 0.80047 0.97253 1.22271 1.01626 1.01607 0.97052 1.22648 0.93524 0.97679 0.87871 1.86377 1.26493 1.82659 1.42811 1.45759 1.57048 1.09087 1.22773 1.18274 0.78464 0.85674 0.82258 1.90688 1.41694 1.77894 1.34992 1.20041 1.05016 0.93391 0.97803 1.21722 0.93832 0.96633 0.95908 1.21549 1.00406 0.92765 0.99348 1.22075 0.92713 1.01354 0.91961 1.22067 1.04492 0.96679 0.99695 1.82601 1.36139 1.52593 1.16772 1.22369 1.06505 1.35178 1.02993 0.93672 1.25734 0.98874 0.97077 0.94747 1.70034 1.32810 1.43976 1.08907 0.85765 0.79178 0.79621 0.81150 1.18711 1.18075 1.14986 1.21622 0.95621 0.92224 0.96975 0.90886 0.92631 0.92172 0.89973 0.92275 0.90982 0.91883 0.93507 0.89422 0.90997 0.90781 0.94595 0.75992 0.75152 0.81435 0.80620 0.84169 0.91242 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.58 71.98 0.62 -1.15 16 2 C -0.08 -1.13 2.10 -10.79 -0.02 -1.15 16 3 C -0.15 -1.56 8.46 71.98 0.61 -0.96 16 4 C 0.18 3.56 0.32 3.61 0.00 3.56 16 5 C -0.17 -3.55 7.67 71.98 0.55 -3.00 16 6 C 0.06 1.27 5.25 71.98 0.38 1.65 16 7 O -0.58 -10.99 12.94 -148.98 -1.93 -12.92 16 8 N -0.69 -15.59 4.65 -425.74 -1.98 -17.57 16 9 C 0.57 18.15 7.19 86.79 0.62 18.77 16 10 O -0.57 -22.62 12.55 -3.89 -0.05 -22.67 16 11 C -0.16 -5.27 5.87 -20.11 -0.12 -5.39 16 12 C -0.06 -1.52 9.54 22.57 0.22 -1.30 16 13 C -0.12 -3.00 10.02 22.21 0.22 -2.78 16 14 C -0.06 -2.07 9.79 22.48 0.22 -1.85 16 15 C -0.12 -5.14 5.45 22.65 0.12 -5.02 16 16 S -0.11 -5.82 19.38 -56.49 -1.09 -6.92 16 17 C -0.52 -31.86 10.01 67.94 0.68 -31.18 16 18 H 0.04 3.05 8.02 -2.91 -0.02 3.02 16 19 C 0.04 2.44 5.50 84.84 0.47 2.91 16 20 N -0.92 -57.64 13.97 21.64 0.30 -57.34 16 21 Si 0.92 44.53 27.74 68.60 1.90 46.43 16 22 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.23 -10.39 6.74 99.48 0.67 -9.72 16 25 C -0.04 -1.81 9.34 22.70 0.21 -1.60 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.64 7.18 -2.39 -0.02 0.62 16 28 H 0.06 0.74 6.35 -2.38 -0.02 0.72 16 29 H 0.08 1.17 7.84 -2.39 -0.02 1.15 16 30 H 0.06 0.65 6.35 -2.39 -0.02 0.64 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.64 6.56 -2.39 -0.02 0.62 16 33 H 0.05 1.36 6.17 -2.39 -0.01 1.34 16 34 H 0.09 1.42 6.56 -2.39 -0.02 1.40 16 35 H 0.07 1.43 6.34 -2.39 -0.02 1.41 16 36 H 0.07 1.18 6.35 -2.38 -0.02 1.17 16 37 H 0.04 1.01 6.16 -2.39 -0.01 0.99 16 38 H 0.39 4.65 9.12 -74.06 -0.68 3.97 16 39 H 0.41 6.85 5.68 -92.71 -0.53 6.32 16 40 H 0.17 2.40 6.40 -2.91 -0.02 2.38 16 41 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.28 15.99 8.31 -92.71 -0.77 15.21 16 44 H 0.11 5.10 7.65 -2.91 -0.02 5.08 16 Total: -1.00 -79.12 360.68 1.74 -77.38 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.20 Total: 22.09 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 4.78 Total: -28.49 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -1.68 Total: -74.91 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.98 Total: -35.59 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -1.09 Total: -6.92 kcal Total: -79.12 1.74 -77.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427386326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.788 kcal (2) G-P(sol) polarization free energy of solvation -79.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds