Wall clock time and date at job start Tue Mar 31 2020 14:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46979 * 2 1 4 4 C 1.52996 * 109.47148 * 119.99882 * 2 1 3 5 5 C 1.52998 * 109.47351 * 294.99979 * 4 2 1 6 6 C 1.53002 * 109.47052 * 55.00316 * 4 2 1 7 7 O 1.42898 * 109.47396 * 64.99657 * 6 4 2 8 8 N 1.46504 * 109.47147 * 174.99784 * 4 2 1 9 9 C 1.34771 * 120.00323 * 180.02562 * 8 4 2 10 10 O 1.21555 * 119.99823 * 0.02562 * 9 8 4 11 11 C 1.47864 * 120.00404 * 180.02562 * 9 8 4 12 12 C 1.39675 * 120.09808 * 359.72567 * 11 9 8 13 13 C 1.38036 * 120.03793 * 179.78648 * 12 11 9 14 14 C 1.38179 * 120.24493 * 0.47150 * 13 12 11 15 15 C 1.39183 * 120.19899 * 359.77914 * 14 13 12 16 16 S 1.76203 * 120.01776 * 179.97438 * 15 14 13 17 17 C 1.76201 * 99.99834 * 265.53244 * 16 15 14 18 18 H 1.08000 * 120.00341 * 5.11699 * 17 16 15 19 19 C 1.38733 * 119.99902 * 185.12161 * 17 16 15 20 20 N 1.31628 * 119.99797 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00118 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46639 * 90.00169 * 21 19 17 23 23 H 1.48501 * 109.47192 * 209.99718 * 21 19 17 24 24 H 1.48501 * 109.47196 * 330.00222 * 21 19 17 25 25 C 1.38873 * 119.96129 * 359.97438 * 15 14 13 26 26 H 1.09003 * 109.46679 * 299.99920 * 1 2 3 27 27 H 1.09000 * 109.47152 * 59.99998 * 1 2 3 28 28 H 1.08995 * 109.46925 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46941 * 240.00519 * 2 1 3 30 30 H 1.09000 * 109.47180 * 299.99984 * 3 2 1 31 31 H 1.09000 * 109.46860 * 60.00469 * 3 2 1 32 32 H 1.09007 * 109.46892 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47139 * 180.02562 * 5 4 2 34 34 H 1.08998 * 109.46956 * 299.99657 * 5 4 2 35 35 H 1.09002 * 109.47162 * 60.00181 * 5 4 2 36 36 H 1.08997 * 109.47045 * 304.99520 * 6 4 2 37 37 H 1.09006 * 109.46877 * 184.99946 * 6 4 2 38 38 H 0.96694 * 114.00022 * 180.02562 * 7 6 4 39 39 H 0.96997 * 119.99911 * 0.02562 * 8 4 2 40 40 H 1.07998 * 119.97836 * 359.97438 * 12 11 9 41 41 H 1.08006 * 119.87811 * 180.21164 * 13 12 11 42 42 H 1.08000 * 119.90042 * 179.76382 * 14 13 12 43 43 H 0.97003 * 119.99780 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.12519 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 0.0689 2.4953 6 6 1.4300 -2.1229 1.3136 7 8 1.9015 -2.8988 0.2102 8 7 3.5001 -0.8264 1.1905 9 6 4.1731 -1.4291 2.1906 10 8 3.5686 -1.8859 3.1411 11 6 5.6468 -1.5348 2.1316 12 6 6.3431 -1.0157 1.0377 13 6 7.7191 -1.1111 0.9860 14 6 8.4130 -1.7280 2.0094 15 6 7.7289 -2.2534 3.1018 16 16 8.6184 -3.0396 4.4038 17 6 8.5143 -4.7175 3.8758 18 1 8.0661 -4.9569 2.9228 19 6 9.0079 -5.7310 4.6843 20 7 9.5537 -5.4393 5.8461 21 14 8.8970 -7.5098 4.1249 22 1 10.1185 -7.8648 3.3586 23 1 8.7820 -8.3956 5.3112 24 1 7.7023 -7.6831 3.2600 25 6 6.3449 -2.1575 3.1648 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.9991 -0.4447 3.3853 34 1 2.0700 1.0674 2.4494 35 1 0.5490 0.1471 2.5390 36 1 0.3435 -2.0487 1.2678 37 1 1.7223 -2.6037 2.2472 38 1 1.5543 -3.8010 0.1869 39 1 3.9825 -0.4622 0.4319 40 1 5.8047 -0.5367 0.2333 41 1 8.2552 -0.7058 0.1405 42 1 9.4893 -1.8029 1.9615 43 1 9.8992 -6.1479 6.4112 44 1 5.8115 -2.5639 4.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427386327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:17 Heat of formation + Delta-G solvation = -70.648042 kcal Electronic energy + Delta-G solvation = -25219.907984 eV Core-core repulsion = 21649.076981 eV Total energy + Delta-G solvation = -3570.831003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58621 -38.65502 -37.26867 -35.89369 -33.43654 -32.48960 -31.21477 -30.49574 -29.62910 -27.81623 -26.10349 -25.55155 -24.12412 -22.88805 -22.13481 -20.16702 -19.20320 -18.22987 -17.43963 -17.37825 -16.21493 -15.93122 -15.34524 -15.20321 -15.00154 -14.83532 -14.43670 -14.33804 -13.78765 -13.58581 -13.37580 -13.19499 -13.07268 -12.83619 -12.64219 -12.39382 -12.19582 -12.06564 -11.70246 -11.59593 -11.38990 -11.13598 -11.10328 -11.06498 -10.92890 -10.69373 -10.64203 -10.12252 -9.91307 -9.41391 -9.14291 -9.04606 -8.95617 -8.53143 -7.99711 -6.69167 -6.26969 -4.00588 1.22477 1.71141 3.10280 3.12163 3.21773 3.25494 3.29831 3.50021 4.07562 4.12778 4.29237 4.35364 4.55695 4.73891 4.88050 5.05263 5.09285 5.13758 5.14795 5.26053 5.28066 5.34086 5.37141 5.47757 5.49824 5.57868 5.59684 5.63721 5.72403 5.78158 5.83203 5.91294 5.93937 5.98542 6.05914 6.26507 6.31238 6.54945 6.64540 6.68423 6.97249 7.23860 7.52445 7.59349 7.62668 8.34641 8.40029 9.18908 10.79789 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018086 B = 0.003124 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.790401 B = 8960.901277 C = 9649.334200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.153 4.153 4 C 0.188 3.812 5 C -0.170 4.170 6 C 0.058 3.942 7 O -0.567 6.567 8 N -0.713 5.713 9 C 0.570 3.430 10 O -0.537 6.537 11 C -0.153 4.153 12 C -0.089 4.089 13 C -0.142 4.142 14 C -0.056 4.056 15 C -0.107 4.107 16 S -0.036 6.036 17 C -0.518 4.518 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.871 5.871 21 Si 0.920 3.080 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.271 1.271 25 C -0.019 4.019 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.377 0.623 39 H 0.398 0.602 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.269 0.731 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.922 12.310 -13.296 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.210 4.210 4 C 0.102 3.898 5 C -0.227 4.227 6 C -0.021 4.021 7 O -0.371 6.371 8 N -0.366 5.366 9 C 0.359 3.641 10 O -0.415 6.415 11 C -0.157 4.157 12 C -0.108 4.108 13 C -0.161 4.161 14 C -0.078 4.078 15 C -0.218 4.218 16 S 0.198 5.802 17 C -0.666 4.666 18 H 0.094 0.906 19 C -0.136 4.136 20 N -0.506 5.506 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.196 1.196 25 C -0.041 4.041 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.223 0.777 39 H 0.233 0.767 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.424 12.889 -11.591 23.203 hybrid contribution -0.737 -1.958 -1.739 2.721 sum -16.161 10.931 -13.330 23.630 Atomic orbital electron populations 1.21932 0.94298 1.02186 1.02081 1.21281 0.96537 0.96078 0.97509 1.21962 1.01147 0.95699 1.02167 1.20298 0.80038 0.93557 0.95898 1.22303 1.01517 1.00483 0.98435 1.22757 0.96778 0.91970 0.90560 1.86432 1.73973 1.28123 1.48619 1.45843 1.06457 1.60463 1.23802 1.18312 0.87207 0.76783 0.81818 1.90684 1.69608 1.47656 1.33580 1.19895 0.92236 1.05747 0.97868 1.21132 0.94641 0.98611 0.96443 1.21049 0.93905 1.01751 0.99420 1.21944 1.00420 0.93702 0.91690 1.22834 0.96142 1.01575 1.01217 1.83588 1.66729 1.03884 1.25955 1.22839 1.46240 0.90150 1.07363 0.90643 1.25002 0.94564 0.99607 0.94417 1.69992 1.37119 1.33628 1.09875 0.86125 0.78791 0.82120 0.78318 1.20164 1.20659 1.19565 1.21924 0.93355 0.92254 0.96548 0.92204 0.92323 0.92131 0.89950 0.92437 0.91938 0.92609 0.89914 0.91529 0.91637 0.93032 0.91254 0.77698 0.76651 0.86655 0.85936 0.85140 0.92083 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.47 37.16 0.31 -0.70 16 2 C -0.10 -0.79 2.16 -90.62 -0.20 -0.98 16 3 C -0.15 -1.09 8.58 37.16 0.32 -0.77 16 4 C 0.19 2.01 0.31 -131.82 -0.04 1.97 16 5 C -0.17 -1.78 7.67 37.16 0.28 -1.50 16 6 C 0.06 0.66 5.31 37.16 0.20 0.85 16 7 O -0.57 -6.55 13.05 -35.23 -0.46 -7.01 16 8 N -0.71 -8.80 4.55 -48.53 -0.22 -9.02 16 9 C 0.57 9.31 7.19 -12.32 -0.09 9.22 16 10 O -0.54 -10.22 12.60 5.32 0.07 -10.15 16 11 C -0.15 -2.65 5.87 -105.00 -0.62 -3.26 16 12 C -0.09 -1.28 9.54 -39.12 -0.37 -1.66 16 13 C -0.14 -2.10 10.02 -39.68 -0.40 -2.50 16 14 C -0.06 -1.03 9.79 -39.25 -0.38 -1.42 16 15 C -0.11 -2.33 5.45 -39.00 -0.21 -2.54 16 16 S -0.04 -0.94 21.41 -107.50 -2.30 -3.24 16 17 C -0.52 -14.80 9.46 30.92 0.29 -14.51 16 18 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 19 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 20 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 21 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.02 -0.40 9.34 -38.92 -0.36 -0.76 16 26 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.43 6.23 -51.93 -0.32 0.11 16 29 H 0.08 0.75 7.96 -51.93 -0.41 0.34 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.44 6.34 -51.93 -0.33 0.11 16 32 H 0.05 0.40 7.18 -51.92 -0.37 0.03 16 33 H 0.08 1.11 6.17 -51.92 -0.32 0.79 16 34 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 35 H 0.06 0.56 6.57 -51.93 -0.34 0.21 16 36 H 0.05 0.47 6.06 -51.93 -0.31 0.15 16 37 H 0.07 0.98 6.31 -51.93 -0.33 0.66 16 38 H 0.38 3.01 9.12 45.56 0.42 3.43 16 39 H 0.40 4.14 5.68 -40.82 -0.23 3.91 16 40 H 0.12 1.23 6.40 -52.49 -0.34 0.89 16 41 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 42 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.14 3.09 7.65 -52.49 -0.40 2.69 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -33.29 363.44 -8.29 -41.58 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.20 Total: 7.25 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -1.36 Total: -16.58 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.51 Total: -33.94 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.39 Total: -17.16 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.30 Total: -3.24 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.29 -8.29 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427386327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.068 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds