Wall clock time and date at job start Tue Mar 31 2020 14:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46979 * 2 1 4 4 C 1.52996 * 109.47148 * 119.99882 * 2 1 3 5 5 C 1.52998 * 109.47351 * 294.99979 * 4 2 1 6 6 C 1.53002 * 109.47052 * 55.00316 * 4 2 1 7 7 O 1.42898 * 109.47396 * 64.99657 * 6 4 2 8 8 N 1.46504 * 109.47147 * 174.99784 * 4 2 1 9 9 C 1.34771 * 120.00323 * 180.02562 * 8 4 2 10 10 O 1.21555 * 119.99823 * 0.02562 * 9 8 4 11 11 C 1.47864 * 120.00404 * 180.02562 * 9 8 4 12 12 C 1.39675 * 120.09808 * 359.72567 * 11 9 8 13 13 C 1.38036 * 120.03793 * 179.78648 * 12 11 9 14 14 C 1.38179 * 120.24493 * 0.47150 * 13 12 11 15 15 C 1.39183 * 120.19899 * 359.77914 * 14 13 12 16 16 S 1.76203 * 120.01776 * 179.97438 * 15 14 13 17 17 C 1.76201 * 99.99834 * 265.53244 * 16 15 14 18 18 H 1.08000 * 120.00341 * 5.11699 * 17 16 15 19 19 C 1.38733 * 119.99902 * 185.12161 * 17 16 15 20 20 N 1.31628 * 119.99797 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00118 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46639 * 90.00169 * 21 19 17 23 23 H 1.48501 * 109.47192 * 209.99718 * 21 19 17 24 24 H 1.48501 * 109.47196 * 330.00222 * 21 19 17 25 25 C 1.38873 * 119.96129 * 359.97438 * 15 14 13 26 26 H 1.09003 * 109.46679 * 299.99920 * 1 2 3 27 27 H 1.09000 * 109.47152 * 59.99998 * 1 2 3 28 28 H 1.08995 * 109.46925 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46941 * 240.00519 * 2 1 3 30 30 H 1.09000 * 109.47180 * 299.99984 * 3 2 1 31 31 H 1.09000 * 109.46860 * 60.00469 * 3 2 1 32 32 H 1.09007 * 109.46892 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47139 * 180.02562 * 5 4 2 34 34 H 1.08998 * 109.46956 * 299.99657 * 5 4 2 35 35 H 1.09002 * 109.47162 * 60.00181 * 5 4 2 36 36 H 1.08997 * 109.47045 * 304.99520 * 6 4 2 37 37 H 1.09006 * 109.46877 * 184.99946 * 6 4 2 38 38 H 0.96694 * 114.00022 * 180.02562 * 7 6 4 39 39 H 0.96997 * 119.99911 * 0.02562 * 8 4 2 40 40 H 1.07998 * 119.97836 * 359.97438 * 12 11 9 41 41 H 1.08006 * 119.87811 * 180.21164 * 13 12 11 42 42 H 1.08000 * 119.90042 * 179.76382 * 14 13 12 43 43 H 0.97003 * 119.99780 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.12519 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 0.0689 2.4953 6 6 1.4300 -2.1229 1.3136 7 8 1.9015 -2.8988 0.2102 8 7 3.5001 -0.8264 1.1905 9 6 4.1731 -1.4291 2.1906 10 8 3.5686 -1.8859 3.1411 11 6 5.6468 -1.5348 2.1316 12 6 6.3431 -1.0157 1.0377 13 6 7.7191 -1.1111 0.9860 14 6 8.4130 -1.7280 2.0094 15 6 7.7289 -2.2534 3.1018 16 16 8.6184 -3.0396 4.4038 17 6 8.5143 -4.7175 3.8758 18 1 8.0661 -4.9569 2.9228 19 6 9.0079 -5.7310 4.6843 20 7 9.5537 -5.4393 5.8461 21 14 8.8970 -7.5098 4.1249 22 1 10.1185 -7.8648 3.3586 23 1 8.7820 -8.3956 5.3112 24 1 7.7023 -7.6831 3.2600 25 6 6.3449 -2.1575 3.1648 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.9991 -0.4447 3.3853 34 1 2.0700 1.0674 2.4494 35 1 0.5490 0.1471 2.5390 36 1 0.3435 -2.0487 1.2678 37 1 1.7223 -2.6037 2.2472 38 1 1.5543 -3.8010 0.1869 39 1 3.9825 -0.4622 0.4319 40 1 5.8047 -0.5367 0.2333 41 1 8.2552 -0.7058 0.1405 42 1 9.4893 -1.8029 1.9615 43 1 9.8992 -6.1479 6.4112 44 1 5.8115 -2.5639 4.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427386327.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:16 Heat of formation + Delta-G solvation = -94.189808 kcal Electronic energy + Delta-G solvation = -25220.928831 eV Core-core repulsion = 21649.076981 eV Total energy + Delta-G solvation = -3571.851850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.69228 -39.84753 -38.48212 -36.74445 -34.66501 -34.49945 -32.37799 -31.89764 -30.64547 -28.43546 -27.75613 -26.92501 -25.26137 -23.98640 -23.43369 -21.40023 -20.20142 -19.87774 -18.91465 -18.30485 -17.31794 -17.11579 -16.94558 -16.67409 -16.24324 -15.97248 -15.73643 -15.62704 -15.11615 -14.78638 -14.62243 -14.33035 -13.96776 -13.81720 -13.69058 -13.40242 -13.26939 -13.10041 -12.99868 -12.97460 -12.94916 -12.60148 -12.39768 -12.35615 -11.99657 -11.75754 -11.65819 -11.40617 -11.24572 -11.09418 -10.78603 -10.51211 -10.16954 -9.88068 -9.69883 -8.81471 -8.40373 -6.20402 -0.16340 0.25560 1.28367 1.36235 1.44869 1.64778 1.83815 2.09230 2.23828 2.81801 2.92485 3.27215 3.40788 3.55257 3.76299 3.84789 3.94002 4.01100 4.13009 4.31522 4.35524 4.42767 4.45697 4.54118 4.57552 4.67871 4.70616 4.74455 4.87312 4.92182 4.96319 5.02075 5.05655 5.17159 5.23206 5.27199 5.32123 5.37251 5.41948 5.50214 5.54361 5.59435 5.86555 6.14607 6.55241 6.78617 6.99860 7.21554 8.66805 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018086 B = 0.003124 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.790401 B = 8960.901277 C = 9649.334200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.153 4.153 4 C 0.181 3.819 5 C -0.166 4.166 6 C 0.059 3.941 7 O -0.579 6.579 8 N -0.694 5.694 9 C 0.566 3.434 10 O -0.573 6.573 11 C -0.156 4.156 12 C -0.066 4.066 13 C -0.121 4.121 14 C -0.065 4.065 15 C -0.128 4.128 16 S -0.095 6.095 17 C -0.536 4.536 18 H 0.066 0.934 19 C 0.020 3.980 20 N -0.906 5.906 21 Si 0.992 3.008 22 H -0.261 1.261 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.045 4.045 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.390 0.610 39 H 0.410 0.590 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.135 0.865 43 H 0.274 0.726 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.192 13.673 -17.249 27.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.210 4.210 4 C 0.096 3.904 5 C -0.224 4.224 6 C -0.020 4.020 7 O -0.385 6.385 8 N -0.345 5.345 9 C 0.354 3.646 10 O -0.454 6.454 11 C -0.161 4.161 12 C -0.085 4.085 13 C -0.140 4.140 14 C -0.085 4.085 15 C -0.240 4.240 16 S 0.140 5.860 17 C -0.683 4.683 18 H 0.084 0.916 19 C -0.185 4.185 20 N -0.542 5.542 21 Si 0.814 3.186 22 H -0.186 1.186 23 H -0.196 1.196 24 H -0.194 1.194 25 C -0.067 4.067 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.239 0.761 39 H 0.248 0.752 40 H 0.185 0.815 41 H 0.192 0.808 42 H 0.153 0.847 43 H 0.083 0.917 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.702 14.277 -15.578 26.934 hybrid contribution -0.449 -2.253 -0.611 2.377 sum -17.151 12.024 -16.189 26.473 Atomic orbital electron populations 1.21945 0.93111 1.02324 1.03097 1.21230 0.97435 0.96369 0.95446 1.21979 1.01234 0.94798 1.02976 1.20556 0.78746 0.93649 0.97446 1.22266 1.02943 1.00346 0.96836 1.22728 0.98283 0.92009 0.88960 1.86377 1.74535 1.29298 1.48334 1.45730 1.07370 1.58690 1.22760 1.18269 0.86891 0.77127 0.82300 1.90687 1.70106 1.49341 1.35251 1.20053 0.93092 1.05221 0.97746 1.21676 0.94766 0.96114 0.95896 1.21536 0.94077 0.99286 0.99094 1.22062 1.00929 0.93963 0.91595 1.22495 0.96184 1.03821 1.01451 1.83458 1.68319 1.04139 1.30074 1.23052 1.46425 0.91586 1.07260 0.91625 1.26010 0.93841 1.04320 0.94376 1.70111 1.37886 1.35222 1.11023 0.85048 0.79157 0.76217 0.78201 1.18590 1.19602 1.19418 1.21601 0.93160 0.94612 0.97305 0.91631 0.90921 0.92440 0.90304 0.90943 0.91878 0.92522 0.93435 0.90593 0.89472 0.90543 0.94886 0.76112 0.75193 0.81515 0.80786 0.84689 0.91666 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.47 71.98 0.61 -0.92 16 2 C -0.09 -1.13 2.16 -10.79 -0.02 -1.16 16 3 C -0.15 -1.59 8.58 71.98 0.62 -0.97 16 4 C 0.18 3.55 0.31 3.60 0.00 3.55 16 5 C -0.17 -3.31 7.67 71.98 0.55 -2.76 16 6 C 0.06 1.28 5.31 71.98 0.38 1.66 16 7 O -0.58 -12.50 13.05 -148.98 -1.94 -14.44 16 8 N -0.69 -15.69 4.55 -425.74 -1.94 -17.63 16 9 C 0.57 18.43 7.19 86.79 0.62 19.05 16 10 O -0.57 -22.98 12.60 -3.89 -0.05 -23.03 16 11 C -0.16 -5.34 5.87 -20.11 -0.12 -5.46 16 12 C -0.07 -1.64 9.54 22.57 0.22 -1.43 16 13 C -0.12 -3.09 10.02 22.21 0.22 -2.87 16 14 C -0.06 -2.32 9.79 22.48 0.22 -2.10 16 15 C -0.13 -5.82 5.45 22.65 0.12 -5.70 16 16 S -0.09 -5.27 21.41 -56.49 -1.21 -6.48 16 17 C -0.54 -32.07 9.46 67.94 0.64 -31.42 16 18 H 0.07 3.90 7.79 -2.91 -0.02 3.88 16 19 C 0.02 1.15 5.49 84.84 0.47 1.62 16 20 N -0.91 -55.32 13.22 21.64 0.29 -55.04 16 21 Si 0.99 45.27 29.55 68.60 2.03 47.30 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 25 C -0.04 -1.97 9.34 22.70 0.21 -1.76 16 26 H 0.06 0.62 6.56 -2.39 -0.02 0.60 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.64 6.23 -2.39 -0.01 0.63 16 29 H 0.08 1.15 7.96 -2.39 -0.02 1.13 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.67 6.34 -2.39 -0.02 0.65 16 32 H 0.06 0.58 7.18 -2.38 -0.02 0.56 16 33 H 0.05 1.31 6.17 -2.38 -0.01 1.30 16 34 H 0.08 1.35 6.34 -2.39 -0.02 1.33 16 35 H 0.09 1.32 6.57 -2.39 -0.02 1.30 16 36 H 0.08 1.26 6.06 -2.39 -0.01 1.25 16 37 H 0.03 0.97 6.31 -2.38 -0.02 0.96 16 38 H 0.39 5.81 9.12 -74.06 -0.68 5.13 16 39 H 0.41 6.93 5.68 -92.71 -0.53 6.40 16 40 H 0.17 2.47 6.40 -2.91 -0.02 2.45 16 41 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 42 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 44 H 0.10 5.08 7.65 -2.91 -0.02 5.06 16 Total: -1.00 -78.95 363.44 1.76 -77.19 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.16 Total: 22.79 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 4.75 Total: -30.66 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.65 Total: -72.67 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.99 Total: -37.47 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -1.21 Total: -6.48 kcal Total: -78.95 1.76 -77.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427386327.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.001 kcal (2) G-P(sol) polarization free energy of solvation -78.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds