Wall clock time and date at job start Tue Mar 31 2020 13:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46966 * 2 1 4 4 C 1.38231 * 120.00277 * 89.99889 * 3 2 1 5 5 C 1.38233 * 120.00274 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99638 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99876 * 179.97438 * 6 5 4 8 8 S 1.81404 * 109.47118 * 89.99826 * 7 6 5 9 9 O 1.42101 * 110.53936 * 68.37605 * 8 7 6 10 10 O 1.42096 * 110.54262 * 291.63017 * 8 7 6 11 11 N 1.65595 * 104.44979 * 180.02562 * 8 7 6 12 12 C 1.46493 * 120.00439 * 65.00030 * 11 8 7 13 13 C 1.52998 * 109.47606 * 159.13435 * 12 11 8 14 14 C 1.50697 * 115.54853 * 294.33524 * 13 12 11 15 15 H 1.08006 * 120.00233 * 95.26759 * 14 13 12 16 16 C 1.37880 * 119.99729 * 274.98797 * 14 13 12 17 17 N 1.31512 * 120.00301 * 355.55829 * 16 14 13 18 18 Si 1.86800 * 119.99867 * 175.56287 * 16 14 13 19 19 H 1.48498 * 109.47435 * 59.99578 * 18 16 14 20 20 H 1.48502 * 109.47455 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47119 * 300.00011 * 18 16 14 22 22 C 1.52999 * 117.49664 * 79.99852 * 13 12 11 23 23 C 1.52998 * 117.50307 * 148.65912 * 13 12 11 24 24 C 1.38231 * 120.00277 * 0.25112 * 6 5 4 25 25 C 1.38234 * 119.99634 * 270.02447 * 3 2 1 26 26 H 1.08998 * 109.47128 * 299.99856 * 1 2 3 27 27 H 1.09002 * 109.47304 * 59.99979 * 1 2 3 28 28 H 1.08995 * 109.46727 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47128 * 240.00143 * 2 1 3 30 30 H 1.08995 * 109.47680 * 119.99467 * 2 1 3 31 31 H 1.08001 * 119.99800 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.99947 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47159 * 330.00305 * 7 6 5 34 34 H 1.09001 * 109.47183 * 209.99705 * 7 6 5 35 35 H 0.97003 * 119.99510 * 245.00095 * 11 8 7 36 36 H 1.09001 * 109.47056 * 39.13288 * 12 11 8 37 37 H 1.09003 * 109.47415 * 279.13868 * 12 11 8 38 38 H 0.97001 * 120.00377 * 185.00136 * 17 16 14 39 39 H 1.09001 * 117.50026 * 215.00196 * 22 13 12 40 40 H 1.08999 * 117.50119 * 0.03166 * 22 13 12 41 41 H 1.09004 * 117.49455 * 359.97438 * 23 13 12 42 42 H 1.09002 * 117.49844 * 144.97219 * 23 13 12 43 43 H 1.08003 * 120.00151 * 179.72796 * 24 6 5 44 44 H 1.07996 * 120.00663 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7229 3.3761 1.1971 6 6 2.9523 4.0280 -0.0001 7 6 3.4535 5.4492 -0.0002 8 16 5.2675 5.4507 -0.0009 9 8 5.7660 4.9608 -1.2381 10 8 5.7670 4.9605 1.2358 11 7 5.6795 7.0546 -0.0002 12 6 5.3429 7.8969 1.1502 13 6 6.2427 9.1342 1.1571 14 6 7.7091 8.8701 1.3828 15 1 8.3766 8.7733 0.5392 16 6 8.1997 8.7579 2.6665 17 7 7.4066 8.9676 3.6943 18 14 9.9911 8.3081 2.9457 19 1 10.8627 9.3328 2.3168 20 1 10.2659 8.2513 4.4040 21 1 10.2690 6.9818 2.3382 22 6 5.8681 10.2854 0.2215 23 6 5.6612 10.4275 1.7315 24 6 2.7165 3.3783 -1.1972 25 6 2.2622 2.0726 -1.1972 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 2.0831 1.5633 2.1324 32 1 2.9025 3.8853 2.1324 33 1 3.0902 5.9627 0.8900 34 1 3.0894 5.9629 -0.8900 35 1 6.1437 7.4364 -0.7615 36 1 5.4941 7.3325 2.0703 37 1 4.3000 8.2064 1.0811 38 1 7.7672 8.9603 4.5948 39 1 6.6822 10.8518 -0.2306 40 1 4.9802 10.1615 -0.3985 41 1 4.6373 10.3970 2.1041 42 1 6.3392 11.0872 2.2732 43 1 2.8915 3.8891 -2.1325 44 1 2.0815 1.5639 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429983776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:27 Heat of formation + Delta-G solvation = -38.823096 kcal Electronic energy + Delta-G solvation = -24935.359034 eV Core-core repulsion = 21365.908065 eV Total energy + Delta-G solvation = -3569.450969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.69718 -37.09882 -36.61356 -35.49987 -35.03256 -33.30607 -31.88645 -31.42411 -31.09561 -27.16436 -25.97117 -24.85092 -23.42134 -22.92268 -21.16108 -20.83883 -19.37768 -18.84779 -17.25919 -16.63870 -16.46145 -15.97569 -15.76580 -15.32670 -15.17470 -14.59846 -14.24327 -14.03966 -13.97484 -13.55705 -13.53068 -13.24010 -13.17001 -12.63442 -12.61598 -12.21197 -12.03505 -12.02073 -11.67794 -11.53219 -11.46375 -11.24872 -11.15376 -11.01487 -10.91821 -10.88288 -10.76670 -10.49494 -10.22528 -9.53719 -9.18466 -9.07781 -8.75954 -8.50722 -8.41940 -8.14612 -6.02076 -4.09285 0.45181 1.24444 1.25310 3.22548 3.34843 3.39646 3.44347 3.56257 4.08166 4.35155 4.42136 4.43844 4.59575 4.63276 4.86238 4.91168 5.06454 5.16023 5.25960 5.26351 5.28741 5.29816 5.41080 5.42910 5.60239 5.68610 5.82049 5.85771 5.91236 5.92780 6.20426 6.23292 6.23361 6.32727 6.36814 6.43301 6.47665 6.68765 6.81461 7.00379 7.07427 7.38389 7.56125 7.69782 7.88939 8.39464 8.90762 9.57356 11.05663 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.003051 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.208188 B = 9176.592386 C = 9566.086139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.080 4.080 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.090 4.090 7 C -0.594 4.594 8 S 2.608 3.392 9 O -0.967 6.967 10 O -0.944 6.944 11 N -1.096 6.096 12 C 0.155 3.845 13 C 0.035 3.965 14 C -0.494 4.494 15 H 0.059 0.941 16 C 0.073 3.927 17 N -0.879 5.879 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.212 4.212 23 C -0.145 4.145 24 C -0.104 4.104 25 C -0.117 4.117 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.416 0.584 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.130 0.870 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.767 -11.962 -7.223 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.133 4.133 5 C -0.121 4.121 6 C -0.091 4.091 7 C -0.720 4.720 8 S 2.698 3.302 9 O -0.957 6.957 10 O -0.934 6.934 11 N -0.856 5.856 12 C 0.029 3.971 13 C 0.033 3.967 14 C -0.531 4.531 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.515 5.515 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.249 4.249 23 C -0.183 4.183 24 C -0.123 4.123 25 C -0.135 4.135 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.250 0.750 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.148 0.852 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.292 -12.812 -6.833 20.374 hybrid contribution 0.492 0.539 -0.005 0.730 sum -13.800 -12.273 -6.839 19.694 Atomic orbital electron populations 1.21748 0.94658 1.01686 1.02290 1.20567 0.96195 0.92522 1.03079 1.19992 0.98523 0.96327 0.93243 1.21035 0.99921 0.94571 0.97815 1.21221 0.97913 0.95178 0.97751 1.19009 1.02882 0.92921 0.94318 1.29777 1.29301 1.00648 1.12250 1.05122 0.76794 0.73727 0.74519 1.93548 1.77359 1.79247 1.45519 1.93612 1.75526 1.78975 1.45269 1.55215 1.72857 1.28893 1.28675 1.21010 0.95260 0.93838 0.87018 1.18918 0.94781 0.84891 0.98158 1.20309 0.90771 1.50035 0.92032 0.92246 1.24953 0.97557 0.94426 0.96138 1.69948 1.34789 1.48212 0.98543 0.86712 0.85136 0.79412 0.77121 1.20336 1.21211 1.19902 1.23030 1.01176 1.07419 0.93316 1.22501 0.99159 1.03483 0.93202 1.21155 0.98432 0.95176 0.97527 1.21007 1.00196 0.94544 0.97757 0.92494 0.92539 0.92387 0.90881 0.90835 0.85545 0.84960 0.84140 0.84307 0.74969 0.89931 0.94933 0.92873 0.90352 0.91677 0.91880 0.89489 0.85226 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.61 16 2 C -0.09 -0.66 6.06 -27.88 -0.17 -0.83 16 3 C -0.08 -0.83 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.29 9.70 -39.59 -0.38 -1.67 16 5 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 6 C -0.09 -1.19 5.14 -104.62 -0.54 -1.72 16 7 C -0.59 -7.56 6.20 36.01 0.22 -7.34 16 8 S 2.61 45.47 5.44 -107.50 -0.59 44.89 16 9 O -0.97 -18.57 18.08 -57.54 -1.04 -19.61 16 10 O -0.94 -20.35 17.43 -57.54 -1.00 -21.36 16 11 N -1.10 -20.03 5.77 -10.62 -0.06 -20.09 16 12 C 0.15 3.15 6.00 -4.05 -0.02 3.13 16 13 C 0.03 0.80 1.49 -155.66 -0.23 0.57 16 14 C -0.49 -13.12 8.75 -34.44 -0.30 -13.42 16 15 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16 16 C 0.07 1.99 5.43 -17.82 -0.10 1.90 16 17 N -0.88 -24.51 12.65 55.43 0.70 -23.81 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.21 -4.26 9.96 -26.69 -0.27 -4.53 16 23 C -0.14 -3.19 9.15 -26.69 -0.24 -3.43 16 24 C -0.10 -1.26 9.70 -39.58 -0.38 -1.64 16 25 C -0.12 -1.25 9.70 -39.58 -0.38 -1.64 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.14 1.58 8.09 -51.93 -0.42 1.16 16 34 H 0.14 1.40 8.08 -51.92 -0.42 0.98 16 35 H 0.42 7.26 8.66 -34.46 -0.30 6.96 16 36 H 0.08 1.90 7.60 -51.93 -0.39 1.51 16 37 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 43 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -33.00 384.29 -11.56 -44.56 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.99 Total: 7.35 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: -3.35 Total: -34.29 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.64 Total: -43.89 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -2.04 Total: -40.97 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 45.47 SS G_CDS: -0.59 Total: 44.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.00 -11.56 -44.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429983776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.739 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds