Wall clock time and date at job start Tue Mar 31 2020 13:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46966 * 2 1 4 4 C 1.38231 * 120.00277 * 89.99889 * 3 2 1 5 5 C 1.38233 * 120.00274 * 180.02562 * 4 3 2 6 6 C 1.38234 * 119.99638 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99876 * 179.97438 * 6 5 4 8 8 S 1.81404 * 109.47118 * 89.99826 * 7 6 5 9 9 O 1.42101 * 110.53936 * 68.37605 * 8 7 6 10 10 O 1.42096 * 110.54262 * 291.63017 * 8 7 6 11 11 N 1.65595 * 104.44979 * 180.02562 * 8 7 6 12 12 C 1.46493 * 120.00439 * 65.00030 * 11 8 7 13 13 C 1.52998 * 109.47606 * 159.13435 * 12 11 8 14 14 C 1.50697 * 115.54853 * 294.33524 * 13 12 11 15 15 H 1.08006 * 120.00233 * 95.26759 * 14 13 12 16 16 C 1.37880 * 119.99729 * 274.98797 * 14 13 12 17 17 N 1.31512 * 120.00301 * 355.55829 * 16 14 13 18 18 Si 1.86800 * 119.99867 * 175.56287 * 16 14 13 19 19 H 1.48498 * 109.47435 * 59.99578 * 18 16 14 20 20 H 1.48502 * 109.47455 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47119 * 300.00011 * 18 16 14 22 22 C 1.52999 * 117.49664 * 79.99852 * 13 12 11 23 23 C 1.52998 * 117.50307 * 148.65912 * 13 12 11 24 24 C 1.38231 * 120.00277 * 0.25112 * 6 5 4 25 25 C 1.38234 * 119.99634 * 270.02447 * 3 2 1 26 26 H 1.08998 * 109.47128 * 299.99856 * 1 2 3 27 27 H 1.09002 * 109.47304 * 59.99979 * 1 2 3 28 28 H 1.08995 * 109.46727 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47128 * 240.00143 * 2 1 3 30 30 H 1.08995 * 109.47680 * 119.99467 * 2 1 3 31 31 H 1.08001 * 119.99800 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.99947 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47159 * 330.00305 * 7 6 5 34 34 H 1.09001 * 109.47183 * 209.99705 * 7 6 5 35 35 H 0.97003 * 119.99510 * 245.00095 * 11 8 7 36 36 H 1.09001 * 109.47056 * 39.13288 * 12 11 8 37 37 H 1.09003 * 109.47415 * 279.13868 * 12 11 8 38 38 H 0.97001 * 120.00377 * 185.00136 * 17 16 14 39 39 H 1.09001 * 117.50026 * 215.00196 * 22 13 12 40 40 H 1.08999 * 117.50119 * 0.03166 * 22 13 12 41 41 H 1.09004 * 117.49455 * 359.97438 * 23 13 12 42 42 H 1.09002 * 117.49844 * 144.97219 * 23 13 12 43 43 H 1.08003 * 120.00151 * 179.72796 * 24 6 5 44 44 H 1.07996 * 120.00663 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7229 3.3761 1.1971 6 6 2.9523 4.0280 -0.0001 7 6 3.4535 5.4492 -0.0002 8 16 5.2675 5.4507 -0.0009 9 8 5.7660 4.9608 -1.2381 10 8 5.7670 4.9605 1.2358 11 7 5.6795 7.0546 -0.0002 12 6 5.3429 7.8969 1.1502 13 6 6.2427 9.1342 1.1571 14 6 7.7091 8.8701 1.3828 15 1 8.3766 8.7733 0.5392 16 6 8.1997 8.7579 2.6665 17 7 7.4066 8.9676 3.6943 18 14 9.9911 8.3081 2.9457 19 1 10.8627 9.3328 2.3168 20 1 10.2659 8.2513 4.4040 21 1 10.2690 6.9818 2.3382 22 6 5.8681 10.2854 0.2215 23 6 5.6612 10.4275 1.7315 24 6 2.7165 3.3783 -1.1972 25 6 2.2622 2.0726 -1.1972 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 2.0831 1.5633 2.1324 32 1 2.9025 3.8853 2.1324 33 1 3.0902 5.9627 0.8900 34 1 3.0894 5.9629 -0.8900 35 1 6.1437 7.4364 -0.7615 36 1 5.4941 7.3325 2.0703 37 1 4.3000 8.2064 1.0811 38 1 7.7672 8.9603 4.5948 39 1 6.6822 10.8518 -0.2306 40 1 4.9802 10.1615 -0.3985 41 1 4.6373 10.3970 2.1041 42 1 6.3392 11.0872 2.2732 43 1 2.8915 3.8891 -2.1325 44 1 2.0815 1.5639 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429983776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:26 Heat of formation + Delta-G solvation = -59.513525 kcal Electronic energy + Delta-G solvation = -24936.256238 eV Core-core repulsion = 21365.908065 eV Total energy + Delta-G solvation = -3570.348174 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53307 -38.77775 -38.09968 -36.97576 -35.80097 -34.85950 -33.88653 -32.22065 -31.94217 -28.03639 -27.81167 -26.60021 -24.13189 -23.77630 -22.82940 -21.65949 -21.15493 -20.23623 -18.74872 -18.13994 -17.72447 -17.13783 -16.84557 -16.63509 -16.47894 -16.12185 -15.78067 -15.25270 -14.80574 -14.73875 -14.63551 -14.35223 -14.04232 -13.95315 -13.71749 -13.57095 -13.44087 -13.16999 -13.06998 -12.98495 -12.85791 -12.84322 -12.70925 -12.38821 -12.15759 -12.01666 -11.93082 -11.77750 -11.69031 -11.33265 -10.97421 -10.37240 -10.24345 -9.94292 -9.90173 -9.49154 -8.09092 -6.18674 -0.83421 0.33461 0.39013 1.36683 1.41772 1.45721 1.85386 2.41921 2.67017 2.86643 3.19901 3.23752 3.38803 3.57948 3.76499 3.87529 4.04024 4.05384 4.25416 4.35490 4.42537 4.49120 4.54188 4.60590 4.62677 4.64632 4.69061 4.71872 4.77420 5.01638 5.04115 5.09655 5.10181 5.14642 5.35838 5.37118 5.37251 5.41500 5.46404 5.64189 5.69864 5.79390 5.84322 5.98670 6.26742 6.44038 6.86589 7.48785 8.97502 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.003051 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.208188 B = 9176.592386 C = 9566.086139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.079 4.079 4 C -0.127 4.127 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.559 4.559 8 S 2.602 3.398 9 O -0.992 6.992 10 O -1.000 7.000 11 N -1.099 6.099 12 C 0.163 3.837 13 C 0.001 3.999 14 C -0.504 4.504 15 H 0.049 0.951 16 C 0.026 3.974 17 N -0.901 5.901 18 Si 0.932 3.068 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.181 4.181 23 C -0.151 4.151 24 C -0.114 4.114 25 C -0.124 4.124 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.159 0.841 34 H 0.175 0.825 35 H 0.418 0.582 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.259 0.741 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.144 0.856 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.065 -12.718 -8.765 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.080 4.080 4 C -0.144 4.144 5 C -0.140 4.140 6 C -0.120 4.120 7 C -0.689 4.689 8 S 2.700 3.300 9 O -0.982 6.982 10 O -0.990 6.990 11 N -0.858 5.858 12 C 0.037 3.963 13 C -0.001 4.001 14 C -0.542 4.542 15 H 0.067 0.933 16 C -0.174 4.174 17 N -0.539 5.539 18 Si 0.758 3.242 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.218 4.218 23 C -0.189 4.189 24 C -0.134 4.134 25 C -0.142 4.142 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.177 0.823 34 H 0.192 0.808 35 H 0.253 0.747 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.162 0.838 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.509 -13.538 -8.383 22.937 hybrid contribution 1.112 0.668 0.414 1.362 sum -15.397 -12.871 -7.969 21.592 Atomic orbital electron populations 1.21730 0.93764 1.02590 1.02043 1.20647 0.96856 0.90837 1.04017 1.20385 0.97164 0.97538 0.92871 1.21333 0.99711 0.94236 0.99154 1.21441 0.98541 0.96141 0.97862 1.19160 1.04563 0.93227 0.95034 1.29418 1.22757 1.01714 1.15057 1.05029 0.79100 0.72911 0.72939 1.93503 1.79467 1.79410 1.45846 1.93543 1.78483 1.79749 1.47181 1.55082 1.74009 1.28667 1.28081 1.20781 0.96945 0.92270 0.86344 1.19035 0.93570 0.86635 1.00889 1.20661 0.93072 1.48957 0.91547 0.93328 1.25549 1.00407 0.95043 0.96429 1.70023 1.35716 1.49676 0.98502 0.86023 0.82313 0.78726 0.77089 1.19282 1.20804 1.20925 1.23035 1.02119 1.04260 0.92402 1.22426 0.99461 1.02335 0.94724 1.21468 0.98225 0.95940 0.97719 1.21379 0.99503 0.94267 0.99022 0.92947 0.92597 0.90942 0.89744 0.90176 0.83842 0.85035 0.82264 0.80764 0.74730 0.93514 0.90627 0.93189 0.90875 0.87892 0.89833 0.92439 0.83799 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.09 -1.10 6.06 29.85 0.18 -0.91 16 3 C -0.08 -1.47 5.13 -19.86 -0.10 -1.57 16 4 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 5 C -0.12 -2.97 9.70 22.27 0.22 -2.76 16 6 C -0.12 -2.92 5.14 -19.87 -0.10 -3.02 16 7 C -0.56 -12.92 6.20 71.24 0.44 -12.48 16 8 S 2.60 90.26 5.44 -56.49 -0.31 89.95 16 9 O -0.99 -38.07 18.08 -127.65 -2.31 -40.37 16 10 O -1.00 -44.63 17.43 -127.65 -2.23 -46.86 16 11 N -1.10 -39.42 5.77 -187.50 -1.08 -40.50 16 12 C 0.16 6.50 6.00 86.38 0.52 7.01 16 13 C 0.00 0.03 1.49 -52.93 -0.08 -0.05 16 14 C -0.50 -27.24 8.75 25.60 0.22 -27.01 16 15 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 16 C 0.03 1.47 5.43 84.66 0.46 1.93 16 17 N -0.90 -51.49 12.65 21.45 0.27 -51.22 16 18 Si 0.93 45.21 29.54 68.60 2.03 47.23 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 22 C -0.18 -6.86 9.96 30.62 0.30 -6.56 16 23 C -0.15 -6.50 9.15 30.62 0.28 -6.22 16 24 C -0.11 -2.52 9.70 22.27 0.22 -2.30 16 25 C -0.12 -2.35 9.70 22.27 0.22 -2.14 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 31 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.16 3.14 8.09 -2.39 -0.02 3.12 16 34 H 0.17 2.81 8.08 -2.39 -0.02 2.79 16 35 H 0.42 14.33 8.66 -96.75 -0.84 13.50 16 36 H 0.05 2.19 7.60 -2.39 -0.02 2.17 16 37 H 0.08 2.34 8.09 -2.39 -0.02 2.32 16 38 H 0.26 14.33 8.32 -92.71 -0.77 13.55 16 39 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 44 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -73.61 384.29 0.22 -73.39 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.14 Total: 27.72 kcal Atomic # 6 Polarization: -63.04 SS G_CDS: 3.70 Total: -59.34 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -0.81 Total: -91.72 kcal Atomic # 8 Polarization: -82.70 SS G_CDS: -4.53 Total: -87.23 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 90.26 SS G_CDS: -0.31 Total: 89.95 kcal Total: -73.61 0.22 -73.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429983776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.877 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds