Wall clock time and date at job start Tue Mar 31 2020 14:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99945 * 2 1 4 4 H 1.09007 * 109.47249 * 32.45486 * 3 2 1 5 5 C 1.53004 * 109.47110 * 152.45210 * 3 2 1 6 6 N 1.46502 * 109.46825 * 300.00125 * 5 3 2 7 7 C 1.34777 * 119.99651 * 179.97438 * 6 5 3 8 8 O 1.21559 * 120.00057 * 0.02562 * 7 6 5 9 9 C 1.47863 * 119.99973 * 179.97438 * 7 6 5 10 10 C 1.39672 * 120.09983 * 0.02562 * 9 7 6 11 11 C 1.38036 * 120.03501 * 179.97438 * 10 9 7 12 12 C 1.38174 * 120.25013 * 0.02562 * 11 10 9 13 13 C 1.39182 * 120.19853 * 0.02562 * 12 11 10 14 14 S 1.76206 * 120.02147 * 180.02562 * 13 12 11 15 15 C 1.76205 * 99.99662 * 274.67470 * 14 13 12 16 16 H 1.07997 * 119.99853 * 5.03086 * 15 14 13 17 17 C 1.38721 * 119.99999 * 185.02884 * 15 14 13 18 18 N 1.31625 * 119.99971 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46978 * 60.00251 * 19 17 15 21 21 H 1.48500 * 109.47489 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47258 * 300.00584 * 19 17 15 23 23 C 1.38874 * 119.96075 * 359.97438 * 13 12 11 24 24 C 1.52998 * 109.47340 * 272.45236 * 3 2 1 25 25 C 1.53003 * 109.47218 * 176.88957 * 24 3 2 26 26 C 1.52995 * 109.47314 * 296.89153 * 24 3 2 27 27 H 1.08998 * 109.46872 * 295.27869 * 1 2 3 28 28 H 1.09009 * 109.46830 * 55.27455 * 1 2 3 29 29 H 1.08992 * 109.47078 * 175.28113 * 1 2 3 30 30 H 1.09004 * 109.47020 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47018 * 60.00337 * 5 3 2 32 32 H 0.96999 * 120.00321 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.97886 * 359.97438 * 10 9 7 34 34 H 1.08004 * 119.87595 * 180.02562 * 11 10 9 35 35 H 1.07995 * 119.90573 * 179.97438 * 12 11 10 36 36 H 0.97005 * 120.00260 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.12441 * 180.30508 * 23 13 12 38 38 H 1.09003 * 109.46885 * 56.89077 * 24 3 2 39 39 H 1.08995 * 109.46835 * 66.46969 * 25 24 3 40 40 H 1.08995 * 109.47106 * 186.46520 * 25 24 3 41 41 H 1.08998 * 109.47212 * 306.46412 * 25 24 3 42 42 H 1.09001 * 109.47106 * 59.99472 * 26 24 3 43 43 H 1.08994 * 109.47528 * 179.97438 * 26 24 3 44 44 H 1.09003 * 109.47083 * 299.99803 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3658 1.9902 0.5515 5 6 3.3861 1.2512 0.6672 6 7 3.2414 0.7810 2.0471 7 6 4.3289 0.6528 2.8328 8 8 5.4297 0.9277 2.3966 9 6 4.1829 0.1788 4.2258 10 6 2.9190 -0.1372 4.7293 11 6 2.7843 -0.5801 6.0297 12 6 3.8965 -0.7125 6.8387 13 6 5.1607 -0.3994 6.3477 14 16 6.5760 -0.5706 7.3832 15 6 6.5434 0.9873 8.2058 16 1 5.7235 1.6697 8.0375 17 6 7.5710 1.3373 9.0695 18 7 8.5706 0.5057 9.2742 19 14 7.5369 2.9892 9.9410 20 1 6.3155 3.0806 10.7808 21 1 8.7404 3.1202 10.8009 22 1 7.5276 4.0802 8.9336 23 6 5.3060 0.0469 5.0407 24 6 2.1613 1.7965 -1.4411 25 6 2.7113 3.2243 -1.4385 26 6 3.1272 0.8793 -2.1939 27 1 -0.3633 0.4388 0.9293 28 1 -0.3633 0.5855 -0.8447 29 1 -0.3633 -1.0241 -0.0845 30 1 3.8292 2.2471 0.6676 31 1 4.0305 0.5666 0.1157 32 1 2.3629 0.5620 2.3953 33 1 2.0467 -0.0349 4.1008 34 1 1.8057 -0.8241 6.4163 35 1 3.7847 -1.0591 7.8554 36 1 9.2889 0.7503 9.8785 37 1 6.2862 0.2858 4.6554 38 1 1.1889 1.7827 -1.9335 39 1 3.7301 3.2204 -1.0509 40 1 2.7112 3.6156 -2.4557 41 1 2.0846 3.8539 -0.8069 42 1 2.7353 -0.1378 -2.1958 43 1 3.2344 1.2289 -3.2207 44 1 4.0996 0.8932 -1.7016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430617168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:44 Heat of formation + Delta-G solvation = -72.942320 kcal Electronic energy + Delta-G solvation = -24323.465769 eV Core-core repulsion = 20752.535279 eV Total energy + Delta-G solvation = -3570.930490 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.15111 -39.12543 -37.70101 -35.58028 -34.33371 -32.49198 -31.08638 -30.51079 -28.76390 -27.58727 -26.53756 -25.55407 -24.51476 -23.09419 -22.12408 -20.52373 -19.90213 -18.26150 -17.45404 -17.04268 -16.76414 -15.92109 -15.49775 -15.25940 -15.01696 -14.84122 -14.68592 -14.56041 -14.17786 -13.81994 -13.50178 -13.33746 -13.29817 -13.21759 -12.90064 -12.35213 -12.28925 -12.09130 -11.77011 -11.63818 -11.62350 -11.24217 -11.14874 -11.09878 -11.06073 -10.86825 -10.70011 -10.02783 -9.94075 -9.70403 -9.17029 -9.11088 -8.96500 -8.55232 -8.00468 -6.69176 -6.26812 -4.00846 1.19864 1.69128 3.05220 3.13681 3.21940 3.24383 3.27364 3.32055 3.48985 4.11276 4.25473 4.28676 4.41955 4.55968 4.79659 4.84232 4.91641 4.94309 5.01902 5.09063 5.12897 5.21189 5.26603 5.27980 5.32471 5.38070 5.49466 5.51414 5.57917 5.65388 5.70177 5.77818 5.89822 5.91506 6.00828 6.02382 6.27676 6.38258 6.61245 6.66482 6.75996 6.95799 7.21700 7.53078 7.58555 8.32832 8.33822 9.18653 10.79948 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.002546 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.208700 B =10995.778646 C =11584.316452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.081 3.919 4 H 0.067 0.933 5 C 0.121 3.879 6 N -0.727 5.727 7 C 0.564 3.436 8 O -0.536 6.536 9 C -0.154 4.154 10 C -0.089 4.089 11 C -0.141 4.141 12 C -0.055 4.055 13 C -0.107 4.107 14 S -0.035 6.035 15 C -0.520 4.520 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.870 5.870 19 Si 0.921 3.079 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.273 1.273 23 C -0.018 4.018 24 C -0.113 4.113 25 C -0.153 4.153 26 C -0.148 4.148 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.400 0.600 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.270 0.730 37 H 0.139 0.861 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.463 1.321 -19.220 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.023 3.977 4 H 0.085 0.915 5 C -0.002 4.002 6 N -0.380 5.380 7 C 0.352 3.648 8 O -0.414 6.414 9 C -0.159 4.159 10 C -0.108 4.108 11 C -0.161 4.161 12 C -0.076 4.076 13 C -0.217 4.217 14 S 0.199 5.801 15 C -0.667 4.667 16 H 0.093 0.907 17 C -0.136 4.136 18 N -0.506 5.506 19 Si 0.747 3.253 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.040 4.040 24 C -0.132 4.132 25 C -0.210 4.210 26 C -0.205 4.205 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.235 0.765 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.157 0.843 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.575 0.445 -19.304 25.447 hybrid contribution -1.688 2.156 0.492 2.783 sum -18.263 2.602 -18.812 26.348 Atomic orbital electron populations 1.22820 0.81111 1.02916 0.99993 1.87993 1.19531 1.27051 1.94951 1.22468 0.94427 0.85187 0.95660 0.91494 1.21573 0.95735 1.01086 0.81818 1.45759 1.10156 1.69268 1.12812 1.18395 0.83906 0.77012 0.85476 1.90770 1.25575 1.49929 1.75093 1.19854 0.94914 1.07380 0.93702 1.21128 0.95473 0.98318 0.95872 1.21052 0.98756 1.02265 0.94050 1.21985 0.91602 0.94538 0.99511 1.22844 1.00578 1.00655 0.97641 1.83618 1.27071 1.24828 1.44567 1.22788 1.11211 1.02410 1.30336 0.90691 1.24996 0.94295 0.98130 0.96152 1.69980 1.09808 1.35664 1.35124 0.86180 0.77749 0.82199 0.79195 1.19849 1.20739 1.19809 1.21927 0.98247 0.91665 0.92175 1.21531 1.00419 0.95939 0.95358 1.21912 1.01734 0.95089 1.02272 1.21847 0.99332 0.99760 0.99608 0.93961 0.94023 0.89480 0.89898 0.90176 0.76507 0.86612 0.85913 0.85098 0.92008 0.84291 0.90742 0.91779 0.92126 0.92501 0.91854 0.92748 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.79 101.05 1.09 1.25 16 2 O -0.38 -3.27 9.56 -35.23 -0.34 -3.60 16 3 C 0.08 0.64 1.97 -26.73 -0.05 0.58 16 4 H 0.07 0.46 7.86 -51.92 -0.41 0.05 16 5 C 0.12 1.29 4.65 -4.04 -0.02 1.27 16 6 N -0.73 -8.91 5.40 -61.24 -0.33 -9.24 16 7 C 0.56 9.38 7.77 -12.32 -0.10 9.28 16 8 O -0.54 -10.81 16.34 5.31 0.09 -10.72 16 9 C -0.15 -2.65 5.87 -105.00 -0.62 -3.27 16 10 C -0.09 -1.25 9.54 -39.12 -0.37 -1.63 16 11 C -0.14 -2.08 10.02 -39.68 -0.40 -2.47 16 12 C -0.06 -1.01 9.79 -39.25 -0.38 -1.40 16 13 C -0.11 -2.31 5.45 -39.00 -0.21 -2.53 16 14 S -0.04 -0.92 21.41 -107.50 -2.30 -3.22 16 15 C -0.52 -14.75 9.46 30.91 0.29 -14.46 16 16 H 0.07 2.10 7.79 -52.49 -0.41 1.69 16 17 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 18 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 19 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.02 -0.38 9.34 -38.92 -0.36 -0.75 16 24 C -0.11 -0.77 2.87 -90.62 -0.26 -1.03 16 25 C -0.15 -0.96 8.74 37.16 0.32 -0.64 16 26 C -0.15 -1.11 8.64 37.15 0.32 -0.79 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.04 0.20 7.54 -51.92 -0.39 -0.19 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.89 6.66 -51.93 -0.35 0.54 16 31 H 0.08 0.95 6.37 -51.93 -0.33 0.62 16 32 H 0.40 3.99 6.38 -40.82 -0.26 3.73 16 33 H 0.12 1.18 6.40 -52.49 -0.34 0.85 16 34 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.14 3.08 7.65 -52.49 -0.40 2.68 16 38 H 0.07 0.45 7.57 -51.93 -0.39 0.06 16 39 H 0.06 0.45 6.85 -51.93 -0.36 0.10 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.52 7.77 -51.93 -0.40 0.12 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.52 6.37 -51.93 -0.33 0.18 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -33.18 377.53 -8.78 -41.97 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.46 Total: 2.13 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.84 Total: -14.59 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.40 Total: -34.14 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.25 Total: -14.32 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.18 -8.78 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430617168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.975 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds