Wall clock time and date at job start Tue Mar 31 2020 14:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99945 * 2 1 4 4 H 1.09007 * 109.47249 * 32.45486 * 3 2 1 5 5 C 1.53004 * 109.47110 * 152.45210 * 3 2 1 6 6 N 1.46502 * 109.46825 * 300.00125 * 5 3 2 7 7 C 1.34777 * 119.99651 * 179.97438 * 6 5 3 8 8 O 1.21559 * 120.00057 * 0.02562 * 7 6 5 9 9 C 1.47863 * 119.99973 * 179.97438 * 7 6 5 10 10 C 1.39672 * 120.09983 * 0.02562 * 9 7 6 11 11 C 1.38036 * 120.03501 * 179.97438 * 10 9 7 12 12 C 1.38174 * 120.25013 * 0.02562 * 11 10 9 13 13 C 1.39182 * 120.19853 * 0.02562 * 12 11 10 14 14 S 1.76206 * 120.02147 * 180.02562 * 13 12 11 15 15 C 1.76205 * 99.99662 * 274.67470 * 14 13 12 16 16 H 1.07997 * 119.99853 * 5.03086 * 15 14 13 17 17 C 1.38721 * 119.99999 * 185.02884 * 15 14 13 18 18 N 1.31625 * 119.99971 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46978 * 60.00251 * 19 17 15 21 21 H 1.48500 * 109.47489 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47258 * 300.00584 * 19 17 15 23 23 C 1.38874 * 119.96075 * 359.97438 * 13 12 11 24 24 C 1.52998 * 109.47340 * 272.45236 * 3 2 1 25 25 C 1.53003 * 109.47218 * 176.88957 * 24 3 2 26 26 C 1.52995 * 109.47314 * 296.89153 * 24 3 2 27 27 H 1.08998 * 109.46872 * 295.27869 * 1 2 3 28 28 H 1.09009 * 109.46830 * 55.27455 * 1 2 3 29 29 H 1.08992 * 109.47078 * 175.28113 * 1 2 3 30 30 H 1.09004 * 109.47020 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47018 * 60.00337 * 5 3 2 32 32 H 0.96999 * 120.00321 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.97886 * 359.97438 * 10 9 7 34 34 H 1.08004 * 119.87595 * 180.02562 * 11 10 9 35 35 H 1.07995 * 119.90573 * 179.97438 * 12 11 10 36 36 H 0.97005 * 120.00260 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.12441 * 180.30508 * 23 13 12 38 38 H 1.09003 * 109.46885 * 56.89077 * 24 3 2 39 39 H 1.08995 * 109.46835 * 66.46969 * 25 24 3 40 40 H 1.08995 * 109.47106 * 186.46520 * 25 24 3 41 41 H 1.08998 * 109.47212 * 306.46412 * 25 24 3 42 42 H 1.09001 * 109.47106 * 59.99472 * 26 24 3 43 43 H 1.08994 * 109.47528 * 179.97438 * 26 24 3 44 44 H 1.09003 * 109.47083 * 299.99803 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3658 1.9902 0.5515 5 6 3.3861 1.2512 0.6672 6 7 3.2414 0.7810 2.0471 7 6 4.3289 0.6528 2.8328 8 8 5.4297 0.9277 2.3966 9 6 4.1829 0.1788 4.2258 10 6 2.9190 -0.1372 4.7293 11 6 2.7843 -0.5801 6.0297 12 6 3.8965 -0.7125 6.8387 13 6 5.1607 -0.3994 6.3477 14 16 6.5760 -0.5706 7.3832 15 6 6.5434 0.9873 8.2058 16 1 5.7235 1.6697 8.0375 17 6 7.5710 1.3373 9.0695 18 7 8.5706 0.5057 9.2742 19 14 7.5369 2.9892 9.9410 20 1 6.3155 3.0806 10.7808 21 1 8.7404 3.1202 10.8009 22 1 7.5276 4.0802 8.9336 23 6 5.3060 0.0469 5.0407 24 6 2.1613 1.7965 -1.4411 25 6 2.7113 3.2243 -1.4385 26 6 3.1272 0.8793 -2.1939 27 1 -0.3633 0.4388 0.9293 28 1 -0.3633 0.5855 -0.8447 29 1 -0.3633 -1.0241 -0.0845 30 1 3.8292 2.2471 0.6676 31 1 4.0305 0.5666 0.1157 32 1 2.3629 0.5620 2.3953 33 1 2.0467 -0.0349 4.1008 34 1 1.8057 -0.8241 6.4163 35 1 3.7847 -1.0591 7.8554 36 1 9.2889 0.7503 9.8785 37 1 6.2862 0.2858 4.6554 38 1 1.1889 1.7827 -1.9335 39 1 3.7301 3.2204 -1.0509 40 1 2.7112 3.6156 -2.4557 41 1 2.0846 3.8539 -0.8069 42 1 2.7353 -0.1378 -2.1958 43 1 3.2344 1.2289 -3.2207 44 1 4.0996 0.8932 -1.7016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430617168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:43 Heat of formation + Delta-G solvation = -94.541963 kcal Electronic energy + Delta-G solvation = -24324.402400 eV Core-core repulsion = 20752.535279 eV Total energy + Delta-G solvation = -3571.867121 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32405 -39.95373 -39.01568 -36.24608 -35.37321 -34.64962 -32.40611 -31.91119 -29.57366 -28.13390 -27.74305 -27.09337 -25.38497 -24.26685 -23.48736 -21.73038 -20.69985 -19.91306 -18.98143 -17.80438 -17.62898 -17.15759 -16.92912 -16.67117 -16.18823 -16.14706 -15.84935 -15.57234 -15.16061 -14.96385 -14.64000 -14.49090 -14.40305 -14.11176 -13.82350 -13.73649 -13.25634 -13.09461 -12.95359 -12.84821 -12.79573 -12.65130 -12.39698 -12.31838 -12.14147 -11.78099 -11.76601 -11.46830 -11.26835 -11.15542 -10.76196 -10.44589 -10.27177 -9.89678 -9.69475 -8.80951 -8.38637 -6.19292 -0.18769 0.25041 1.29608 1.39538 1.45631 1.63772 1.79487 2.04765 2.25172 2.75047 2.80866 2.94379 3.42308 3.60347 3.68131 3.86533 3.93381 3.96786 4.03268 4.25693 4.29689 4.35431 4.47384 4.50644 4.56198 4.59970 4.67236 4.71343 4.78570 4.84708 4.91794 4.96005 5.00525 5.05370 5.17722 5.21781 5.28684 5.32256 5.38425 5.39396 5.45538 5.50173 5.85536 6.15998 6.24538 6.44060 7.01288 7.11663 8.68461 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.002546 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.208700 B =10995.778646 C =11584.316452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.089 3.911 4 H 0.087 0.913 5 C 0.117 3.883 6 N -0.703 5.703 7 C 0.561 3.439 8 O -0.583 6.583 9 C -0.157 4.157 10 C -0.062 4.062 11 C -0.120 4.120 12 C -0.063 4.063 13 C -0.128 4.128 14 S -0.099 6.099 15 C -0.536 4.536 16 H 0.069 0.931 17 C 0.018 3.982 18 N -0.907 5.907 19 Si 0.993 3.007 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.270 1.270 23 C -0.044 4.044 24 C -0.109 4.109 25 C -0.152 4.152 26 C -0.148 4.148 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.415 0.585 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.133 0.867 36 H 0.274 0.726 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.929 2.493 -20.007 30.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.031 3.969 4 H 0.105 0.895 5 C -0.006 4.006 6 N -0.355 5.355 7 C 0.349 3.651 8 O -0.464 6.464 9 C -0.162 4.162 10 C -0.081 4.081 11 C -0.139 4.139 12 C -0.084 4.084 13 C -0.239 4.239 14 S 0.136 5.864 15 C -0.683 4.683 16 H 0.088 0.912 17 C -0.187 4.187 18 N -0.544 5.544 19 Si 0.815 3.185 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.066 4.066 24 C -0.128 4.128 25 C -0.210 4.210 26 C -0.205 4.205 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.253 0.747 33 H 0.188 0.812 34 H 0.193 0.807 35 H 0.151 0.849 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.101 1.599 -20.109 29.193 hybrid contribution -0.446 1.719 0.569 1.865 sum -21.548 3.319 -19.540 29.277 Atomic orbital electron populations 1.23007 0.79474 1.03749 1.01206 1.87969 1.21329 1.27271 1.95117 1.22396 0.92812 0.85589 0.96117 0.89500 1.21709 0.97763 1.00419 0.80686 1.45585 1.09562 1.67404 1.12951 1.18393 0.84224 0.76870 0.85595 1.90753 1.27610 1.52174 1.75856 1.19956 0.95205 1.07255 0.93744 1.21682 0.95460 0.94778 0.96160 1.21541 0.99427 0.99607 0.93365 1.22085 0.91292 0.94641 1.00412 1.22482 0.99823 1.04399 0.97171 1.83541 1.31540 1.25015 1.46307 1.23035 1.11385 1.03084 1.30774 0.91248 1.26034 0.93665 1.02197 0.96775 1.70112 1.10562 1.37759 1.35941 0.85080 0.78518 0.76889 0.78037 1.18392 1.19665 1.19460 1.21620 0.98372 0.93943 0.92678 1.21518 1.00853 0.95763 0.94649 1.21909 1.01102 0.95010 1.02953 1.21831 0.98793 0.99670 1.00223 0.92597 0.92964 0.88935 0.90080 0.91830 0.74713 0.81187 0.80689 0.84890 0.91705 0.87746 0.89189 0.93112 0.91324 0.91556 0.92656 0.91821 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.79 113.37 1.22 1.39 16 2 O -0.40 -5.67 9.56 -148.98 -1.42 -7.09 16 3 C 0.09 1.15 1.97 30.60 0.06 1.21 16 4 H 0.09 0.81 7.86 -2.38 -0.02 0.79 16 5 C 0.12 2.34 4.65 86.38 0.40 2.74 16 6 N -0.70 -15.61 5.40 -465.93 -2.52 -18.12 16 7 C 0.56 18.39 7.77 86.79 0.67 19.07 16 8 O -0.58 -24.47 16.34 -3.90 -0.06 -24.53 16 9 C -0.16 -5.26 5.87 -20.11 -0.12 -5.37 16 10 C -0.06 -1.48 9.54 22.57 0.22 -1.27 16 11 C -0.12 -2.98 10.02 22.21 0.22 -2.76 16 12 C -0.06 -2.25 9.79 22.48 0.22 -2.03 16 13 C -0.13 -5.74 5.45 22.65 0.12 -5.62 16 14 S -0.10 -5.49 21.41 -56.49 -1.21 -6.70 16 15 C -0.54 -31.64 9.46 67.94 0.64 -30.99 16 16 H 0.07 4.02 7.79 -2.91 -0.02 3.99 16 17 C 0.02 1.06 5.49 84.84 0.47 1.53 16 18 N -0.91 -55.32 13.22 21.63 0.29 -55.03 16 19 Si 0.99 44.70 29.55 68.60 2.03 46.73 16 20 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 C -0.04 -1.92 9.34 22.70 0.21 -1.71 16 24 C -0.11 -1.22 2.87 -10.80 -0.03 -1.25 16 25 C -0.15 -1.61 8.74 71.98 0.63 -0.98 16 26 C -0.15 -2.07 8.64 71.98 0.62 -1.45 16 27 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.05 0.30 7.54 -2.38 -0.02 0.28 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.08 1.68 6.66 -2.38 -0.02 1.67 16 31 H 0.06 1.52 6.37 -2.39 -0.02 1.50 16 32 H 0.41 6.44 6.38 -92.71 -0.59 5.84 16 33 H 0.17 2.24 6.40 -2.91 -0.02 2.22 16 34 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 36 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 37 H 0.10 5.12 7.65 -2.91 -0.02 5.10 16 38 H 0.09 0.79 7.57 -2.39 -0.02 0.77 16 39 H 0.05 0.67 6.85 -2.39 -0.02 0.66 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.05 0.85 7.77 -2.39 -0.02 0.84 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.05 0.79 6.37 -2.39 -0.02 0.77 16 Total: -1.00 -78.66 377.53 3.08 -75.58 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.42 Total: 16.65 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 5.56 Total: -27.49 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -2.23 Total: -73.16 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.49 Total: -31.62 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -1.21 Total: -6.70 kcal Total: -78.66 3.08 -75.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430617168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.958 kcal (2) G-P(sol) polarization free energy of solvation -78.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds